Re: [sage-release] Re: Sage 6.10.rc0 released

2015-12-12 Thread Jeroen Demeyer

On 2015-12-11 22:39, William Stein wrote:

Hi,

I tried to build sage-6.10.rc0 for system-wide use on SageMathCloud,
and hit this at the very end when building docs: "RuntimeError: In
order to initialize the database,
/projects/sage/sage-6.10/local/share/conway_polynomials/conway_polynomials.sobj
must exist."

As Dima said, this is fixed in
http://trac.sagemath.org/ticket/19679

Given that several people reported this bug now but not earlier, there 
is a regression of some sort: formerly, building the documentation did 
not require conway_polynomials.



Any thoughts?  How did other people report success?
I guess this problem *only* appears in non-parallel builds. After 
building the Sage library, conway_polynomials might be built in parallel 
with the doc just in time.


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[sage-release] Re: Sage 6.10.rc0 released

2015-12-12 Thread Emmanuel Charpentier
Ahem...

Testing 6.10rc0 *alone* gave me a (reproduced below) doctest failure :

charpent@asus16-ec:/usr/local/sage$ sage -t --long --warn-long 71.2 
src/sage/groups/generic.py  # 2 doctests failed
Running doctests with ID 2015-12-12-10-51-10-1915af2a.
Git branch: develop
Using --optional=database_gap,dot2tex,mpir,python2,sage,sage_mode
Doctesting 1 file.
sage -t --long --warn-long 71.2 src/sage/groups/generic.py
**
File "src/sage/groups/generic.py", line 1388, in 
sage.groups.generic.structure_description
Failed example:
G.structure_description() # optional - database_gap
Expected:
'C7'
Got:
'"C7"'
**
File "src/sage/groups/generic.py", line 1393, in 
sage.groups.generic.structure_description
Failed example:
groups.matrix.GL(4,2).structure_description() # optional - database_gap
Expected:
'A8'
Got:
'"A8"'
**
1 item had failures:
   2 of  14 in sage.groups.generic.structure_description
[216 tests, 2 failures, 2.85 s]
--
sage -t --long --warn-long 71.2 src/sage/groups/generic.py  # 2 doctests 
failed
--
Total time for all tests: 2.9 seconds
cpu time: 2.7 seconds
cumulative wall time: 2.8 seconds

I also get this failure (and only this failure) when testing 
6.10rc0+Trac#19692 (in progress : upgrade R to 3.2.3).

I do *not* understand this failure (and especially the fact I do *not* get 
it with Trac#19638..., which upgrades RPy2 (also work in progress, because 
it still needs documentation).

HTH (but doubting it),

--
Emmanuel Charpentier

Le vendredi 11 décembre 2015 20:39:30 UTC+1, Emmanuel Charpentier a écrit :
>
> FWIW 6.10rc0+Trac#19638 (not yet reviewed !) passes ptestlong with no 
> error on Debian testing running on Core i7 + 16 GB RAM.
>
> I had a compilation hiccup on the build of simplegeneric (0.8.1), which 
> failed for lack of build directory, but was unable t reproduce the error : 
> a second make (with no modification whatsoever) was successful and passed 
> ptestlong.
>
> I was compiling with MAKE="make -j8". It might be a simple synchronization 
> problem, but the machine was not especially loaded at the time...
>
> HTH,
>
> --
> Emmanuel Charpentier
>
> Le jeudi 10 décembre 2015 00:50:28 UTC+1, Volker Braun a écrit :
>>
>> As always, you can get the latest beta version from the "develop" git 
>> branch. Alternatively, the self-contained source tarball is at 
>> http://www.sagemath.org/download-latest.html
>>
>> 098b62d Updated Sage version to 6.10.rc0
>> 2c4edac Trac #19668: Symmetric square L-functions for modular forms
>> 4d6e860 Trac #19675: Move normalize_names() out of CategoryObject
>> 11979c8 Trac #19643: BRiAl not building on cygwin
>> 31843ae Trac #19438: generators given by as_permutation_group in the 
>> wrong order
>> 37d3d59 Trac #19035: Improve assumption documentation and doctest recent 
>> improvements
>> 790580d Trac #17379: Add a 'all' option to the .nth_root() method of 
>> algebraic numbers
>> 250258a Trac #19663: Fix sublinking again
>> 10b3951 Trac #19619: Simplify words.py
>> 64908bf Trac #19590: Further NTL cleanup
>> 89e4c3b Trac #19672: giac depends on Sage runtime
>> 1380421 Trac #19648: simplegeneric depends on setuptools
>> 672a7d7 Trac #19644: arb does not build on cygwin
>> 0e7f333 Trac #19395: Implement Tableau to sign matrix code
>> f8392e3 Trac #19664: Fix Laurent series comparison and make it more 
>> efficient
>> 283aad7 Trac #19632: Haemers srgs
>> a3d8df6 Trac #19660: Fix bug in word problem for GammaH arithmetic groups
>> 94635f7 Trac #19662: Less wasteful management of edge labels
>> 7e82223 Trac #19452: Fix PolynomialSequence
>> 413272d Trac #19364: Add edges() and endpoints() method to intervals
>> 68504c2 Trac #19107: Do not count 4 times the same solution (up to 
>> rotations) in QuantuminoSolver
>> 002d253 Trac #18928: A new structure for Reed-Solomon codes in Sage
>> 4ba1e9a Trac #13543: Multi-character variables not supported in 
>> legend_labels
>> 7c27cd2 Updated Sage version to 6.10.beta7
>>
>>

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Re: [sage-release] Re: Sage 6.10.rc0 released

2015-12-12 Thread Volker Braun
On Friday, December 11, 2015 at 10:39:57 PM UTC+1, William Stein wrote:
>
> but there's no "conway_polynomials-0.4.p0" in upstream/, only 
> "conway_polynomials-0.4.tar.bz2", i.e,. with no p0. 
>

Thats normal, the patchlevel is to force reinstalling the package when the 
spkg-install script changed. The tarball is always pristine upstream 
(without -pN).

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[sage-release] Re: Sage 6.10.rc0 released

2015-12-12 Thread Dima Pasechnik


On Saturday, 12 December 2015 10:02:33 UTC, Emmanuel Charpentier wrote:

> Testing 6.10rc0 *alone* gave me a (reproduced below) doctest failure :
>
> charpent@asus16-ec:/usr/local/sage$ sage -t --long --warn-long 71.2 
> src/sage/groups/generic.py  # 2 doctests failed
> Running doctests with ID 2015-12-12-10-51-10-1915af2a.
> Git branch: develop
> Using --optional=database_gap,dot2tex,mpir,python2,sage,sage_mode
> Doctesting 1 file.
> sage -t --long --warn-long 71.2 src/sage/groups/generic.py
> **
> File "src/sage/groups/generic.py", line 1388, in 
> sage.groups.generic.structure_description
> Failed example:
> G.structure_description() # optional - database_gap
> Expected:
> 'C7'
> Got:
> '"C7"'
> **
> File "src/sage/groups/generic.py", line 1393, in 
> sage.groups.generic.structure_description
> Failed example:
> groups.matrix.GL(4,2).structure_description() # optional - 
> database_gap
> Expected:
> 'A8'
> Got:
> '"A8"'
> **
> 1 item had failures:
>2 of  14 in sage.groups.generic.structure_description
> [216 tests, 2 failures, 2.85 s]
> --
> sage -t --long --warn-long 71.2 src/sage/groups/generic.py  # 2 doctests 
> failed
> --
> Total time for all tests: 2.9 seconds
> cpu time: 2.7 seconds
> cumulative wall time: 2.8 seconds
>
> yes, I get this with rc0 (and few totally irrelevant patches on top).
The change goes back to 2015-01-26, according to git blame.

Should  I open a ticket for this?

Dima

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Re: [sage-release] Re: Sage 6.10.rc0 released

2015-12-12 Thread Emmanuel Charpentier
Another data point : to solve another problem, I recompiled Sage from a 
pristine git clone ... and got the same error as William did. Simply 
importing the conway_polynomials tarball from the upstream directory of 
another Sage tree in the "pristine" upstream allowed to recompile ( make 
distclean &&make ) a Sage that passes ptestlong with no errors.

It seems that the build system can build conway_polynomials, but fails to 
download it if not present, and (worse), fails *silently* : it does not 
report its absence at software-compilation time, but only at 
doc-compilation time.

HTH,

--
Emmanuel Charpentier

Le samedi 12 décembre 2015 12:27:22 UTC+1, Volker Braun a écrit :
>
> On Friday, December 11, 2015 at 10:39:57 PM UTC+1, William Stein wrote:
>>
>> but there's no "conway_polynomials-0.4.p0" in upstream/, only 
>> "conway_polynomials-0.4.tar.bz2", i.e,. with no p0. 
>>
>
> Thats normal, the patchlevel is to force reinstalling the package when the 
> spkg-install script changed. The tarball is always pristine upstream 
> (without -pN).
>

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Re: [sage-release] Re: Sage 6.10.rc0 released

2015-12-12 Thread Jeroen Demeyer

On 2015-12-12 18:42, Emmanuel Charpentier wrote:

It seems that the build system can build conway_polynomials, but fails
to download it if not present, and (worse), fails *silently*


Are you seeing any evidence that the build of conway_polynomials failed?
Most likely, the download/build of conway_polynomials did not fail, it 
just didn't happen.



it does
not report its absence at software-compilation time, but only at
doc-compilation time.


There is no longer a difference between software-compilation time and 
doc-compilation time: the doc can be built in parallel with packages.


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[sage-release] Re: Sage 6.10.rc0 released

2015-12-12 Thread Emmanuel Charpentier
Recompiling from a pristine clone of the git tree seems to fix the problem.

The build system seems to have a few problems in its dependencies.

Probably not easy to diagnose. A ticket seems in order to me (bu I'm a 
newbie with Sage development...).

HTH,

--
Emmanuel Charpentier

Le samedi 12 décembre 2015 16:01:06 UTC+1, Dima Pasechnik a écrit :
>
>
>
> On Saturday, 12 December 2015 10:02:33 UTC, Emmanuel Charpentier wrote:
>
>> Testing 6.10rc0 *alone* gave me a (reproduced below) doctest failure :
>>
>> charpent@asus16-ec:/usr/local/sage$ sage -t --long --warn-long 71.2 
>> src/sage/groups/generic.py  # 2 doctests failed
>> Running doctests with ID 2015-12-12-10-51-10-1915af2a.
>> Git branch: develop
>> Using --optional=database_gap,dot2tex,mpir,python2,sage,sage_mode
>> Doctesting 1 file.
>> sage -t --long --warn-long 71.2 src/sage/groups/generic.py
>> **
>> File "src/sage/groups/generic.py", line 1388, in 
>> sage.groups.generic.structure_description
>> Failed example:
>> G.structure_description() # optional - database_gap
>> Expected:
>> 'C7'
>> Got:
>> '"C7"'
>> **
>> File "src/sage/groups/generic.py", line 1393, in 
>> sage.groups.generic.structure_description
>> Failed example:
>> groups.matrix.GL(4,2).structure_description() # optional - 
>> database_gap
>> Expected:
>> 'A8'
>> Got:
>> '"A8"'
>> **
>> 1 item had failures:
>>2 of  14 in sage.groups.generic.structure_description
>> [216 tests, 2 failures, 2.85 s]
>> --
>> sage -t --long --warn-long 71.2 src/sage/groups/generic.py  # 2 doctests 
>> failed
>> --
>> Total time for all tests: 2.9 seconds
>> cpu time: 2.7 seconds
>> cumulative wall time: 2.8 seconds
>>
>> yes, I get this with rc0 (and few totally irrelevant patches on top).
> The change goes back to 2015-01-26, according to git blame.
>
> Should  I open a ticket for this?
>
> Dima
>
>

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Re: [sage-release] Re: Sage 6.10.rc0 released

2015-12-12 Thread Emmanuel Charpentier


Le samedi 12 décembre 2015 20:10:48 UTC+1, Jeroen Demeyer a écrit :
>
> On 2015-12-12 18:42, Emmanuel Charpentier wrote: 
> > It seems that the build system can build conway_polynomials, but fails 
> > to download it if not present, and (worse), fails *silently* 
>
> Are you seeing any evidence that the build of conway_polynomials failed? 
>

Nope : I was on other problems, and I solved this problem the Alexandine 
way : make distclean && make...
 

> Most likely, the download/build of conway_polynomials did not fail, it 
> just didn't happen. 
>

Quite possible. But this is a problem _per se_, which went unreported. 

>
> > it does 
> > not report its absence at software-compilation time, but only at 
> > doc-compilation time
> There is no longer a difference between software-compilation time and 
> doc-compilation time: the doc can be built in parallel with packages. 
>

Could that explain that sometimes, I get a build error for some random 
packages, and that retrying immediately (i. e. with no modification of the 
tree) another attempt at make succeeds ? That would point to a problem of 
tasks synchronization.

HTH,

--
Emmanuel Charpentier 

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[sage-release] Re: Sage 6.10.rc0 released

2015-12-12 Thread John H Palmieri
Building from scratch on OS X 10.11 fails for me. In the singular log:

error: 
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/install_name_tool:
 
changing install names or rpaths can't be redone for: 
/Users/palmieri/Desktop/Sage_stuff/sage_builds/clean/sage-6.10.rc0/local/lib/libsingular.dylib
 
(for architecture x86_64) because larger updated load commands do not fit 
(the program must be relinked, and you may need to use -headerpad or 
-headerpad_max_install_names)

The build seems to complete, but then when "Testing that Sage starts":

Traceback (most recent call last):
  File 
"/Users/palmieri/Desktop/Sage_stuff/sage_builds/clean/sage-6.10.rc0/src/bin/sage-eval",
 
line 4, in 
from sage.all import *
  File 
"/Users/palmieri/Desktop/Sage_stuff/sage_builds/clean/sage-6.10.rc0/local/lib/python2.7/site-packages/sage/all.py",
 
line 99, in 
from sage.rings.all  import *
  File 
"/Users/palmieri/Desktop/Sage_stuff/sage_builds/clean/sage-6.10.rc0/local/lib/python2.7/site-packages/sage/rings/all.py",
 
line 62, in 
from number_field.all import *
  File 
"/Users/palmieri/Desktop/Sage_stuff/sage_builds/clean/sage-6.10.rc0/local/lib/python2.7/site-packages/sage/rings/number_field/all.py",
 
line 7, in 
from totallyreal import enumerate_totallyreal_fields_prim
  File "sage/rings/number_field/totallyreal_data.pxd", line 12, in init 
sage.rings.number_field.totallyreal 
(build/cythonized/sage/rings/number_field/totallyreal.c:10979)
  File "sage/rings/number_field/totallyreal_data.pyx", line 40, in init 
sage.rings.number_field.totallyreal_data 
(build/cythonized/sage/rings/number_field/totallyreal_data.c:11690)
  File 
"/Users/palmieri/Desktop/Sage_stuff/sage_builds/clean/sage-6.10.rc0/local/lib/python2.7/site-packages/sage/rings/polynomial/polynomial_ring_constructor.py",
 
line 459, in PolynomialRing
R = _single_variate(base_ring, name, sparse, implementation)
  File 
"/Users/palmieri/Desktop/Sage_stuff/sage_builds/clean/sage-6.10.rc0/local/lib/python2.7/site-packages/sage/rings/polynomial/polynomial_ring_constructor.py",
 
line 531, in _single_variate
R = m.PolynomialRing_integral_domain(base_ring, name, sparse, 
implementation)
  File 
"/Users/palmieri/Desktop/Sage_stuff/sage_builds/clean/sage-6.10.rc0/local/lib/python2.7/site-packages/sage/rings/polynomial/polynomial_ring.py",
 
line 1545, in __init__
sparse=sparse, element_class=element_class)
  File 
"/Users/palmieri/Desktop/Sage_stuff/sage_builds/clean/sage-6.10.rc0/local/lib/python2.7/site-packages/sage/rings/polynomial/polynomial_ring.py",
 
line 1452, in __init__
sparse=sparse, element_class=element_class, category=category)
  File 
"/Users/palmieri/Desktop/Sage_stuff/sage_builds/clean/sage-6.10.rc0/local/lib/python2.7/site-packages/sage/rings/polynomial/polynomial_ring.py",
 
line 306, in __init__
from sage.matrix.matrix_space import is_MatrixSpace
  File 
"/Users/palmieri/Desktop/Sage_stuff/sage_builds/clean/sage-6.10.rc0/local/lib/python2.7/site-packages/sage/matrix/matrix_space.py",
 
line 57, in 
import matrix_mpolynomial_dense
ImportError: 
dlopen(/Users/palmieri/Desktop/Sage_stuff/sage_builds/clean/sage-6.10.rc0/local/lib/python2.7/site-packages/sage/matrix/matrix_mpolynomial_dense.so,
 
2): Library not loaded: libsingular.dylib
  Referenced from: 
/Users/palmieri/Desktop/Sage_stuff/sage_builds/clean/sage-6.10.rc0/local/lib/python2.7/site-packages/sage/matrix/matrix_mpolynomial_dense.so
  Reason: image not found
Sage failed to start up.
Please email sage-devel (http://groups.google.com/group/sage-devel)
explaining the problem and send the log file
  
/Users/palmieri/Desktop/Sage_stuff/sage_builds/clean/sage-6.10.rc0/logs/start.log
Describe your computer, operating system, etc.
make[2]: *** 
[/Users/palmieri/Desktop/Sage_stuff/sage_builds/clean/sage-6.10.rc0/local/etc/sage-started.txt]
 
Error 1
make[1]: *** [all] Error 2



On Wednesday, December 9, 2015 at 3:50:28 PM UTC-8, Volker Braun wrote:
>
> As always, you can get the latest beta version from the "develop" git 
> branch. Alternatively, the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html
>
> 098b62d Updated Sage version to 6.10.rc0
> 2c4edac Trac #19668: Symmetric square L-functions for modular forms
> 4d6e860 Trac #19675: Move normalize_names() out of CategoryObject
> 11979c8 Trac #19643: BRiAl not building on cygwin
> 31843ae Trac #19438: generators given by as_permutation_group in the wrong 
> order
> 37d3d59 Trac #19035: Improve assumption documentation and doctest recent 
> improvements
> 790580d Trac #17379: Add a 'all' option to the .nth_root() method of 
> algebraic numbers
> 250258a Trac #19663: Fix sublinking again
> 10b3951 Trac #19619: Simplify words.py
> 64908bf Trac #19590: Further NTL cleanup
> 89e4c3b Trac #19672: giac depends on Sage runtime
> 1380421 Trac #19648: simplegeneric depends on setuptools
> 672a7d7 Trac #19644: arb does not build on cygwin
> 0e

Re: [sage-release] Sage 6.10.rc0 released

2015-12-12 Thread Francois Bissey
Are you moving sage or is it just after the build? I guess adding 
header pad_max_install_names on OS X is not a bad idea and
would probably help Volker’s work.

François

> On 13/12/2015, at 18:51, John H Palmieri  wrote:
> 
> Building from scratch on OS X 10.11 fails for me. In the singular log:
> 
> error: 
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/install_name_tool:
>  changing install names or rpaths can't be redone for: 
> /Users/palmieri/Desktop/Sage_stuff/sage_builds/clean/sage-6.10.rc0/local/lib/libsingular.dylib
>  (for architecture x86_64) because larger updated load commands do not fit 
> (the program must be relinked, and you may need to use -headerpad or 
> -headerpad_max_install_names)
> 
> The build seems to complete, but then when "Testing that Sage starts":
> 
> Traceback (most recent call last):
>   File 
> "/Users/palmieri/Desktop/Sage_stuff/sage_builds/clean/sage-6.10.rc0/src/bin/sage-eval",
>  line 4, in 
> from sage.all import *
>   File 
> "/Users/palmieri/Desktop/Sage_stuff/sage_builds/clean/sage-6.10.rc0/local/lib/python2.7/site-packages/sage/all.py",
>  line 99, in 
> from sage.rings.all  import *
>   File 
> "/Users/palmieri/Desktop/Sage_stuff/sage_builds/clean/sage-6.10.rc0/local/lib/python2.7/site-packages/sage/rings/all.py",
>  line 62, in 
> from number_field.all import *
>   File 
> "/Users/palmieri/Desktop/Sage_stuff/sage_builds/clean/sage-6.10.rc0/local/lib/python2.7/site-packages/sage/rings/number_field/all.py",
>  line 7, in 
> from totallyreal import enumerate_totallyreal_fields_prim
>   File "sage/rings/number_field/totallyreal_data.pxd", line 12, in init 
> sage.rings.number_field.totallyreal 
> (build/cythonized/sage/rings/number_field/totallyreal.c:10979)
>   File "sage/rings/number_field/totallyreal_data.pyx", line 40, in init 
> sage.rings.number_field.totallyreal_data 
> (build/cythonized/sage/rings/number_field/totallyreal_data.c:11690)
>   File 
> "/Users/palmieri/Desktop/Sage_stuff/sage_builds/clean/sage-6.10.rc0/local/lib/python2.7/site-packages/sage/rings/polynomial/polynomial_ring_constructor.py",
>  line 459, in PolynomialRing
> R = _single_variate(base_ring, name, sparse, implementation)
>   File 
> "/Users/palmieri/Desktop/Sage_stuff/sage_builds/clean/sage-6.10.rc0/local/lib/python2.7/site-packages/sage/rings/polynomial/polynomial_ring_constructor.py",
>  line 531, in _single_variate
> R = m.PolynomialRing_integral_domain(base_ring, name, sparse, 
> implementation)
>   File 
> "/Users/palmieri/Desktop/Sage_stuff/sage_builds/clean/sage-6.10.rc0/local/lib/python2.7/site-packages/sage/rings/polynomial/polynomial_ring.py",
>  line 1545, in __init__
> sparse=sparse, element_class=element_class)
>   File 
> "/Users/palmieri/Desktop/Sage_stuff/sage_builds/clean/sage-6.10.rc0/local/lib/python2.7/site-packages/sage/rings/polynomial/polynomial_ring.py",
>  line 1452, in __init__
> sparse=sparse, element_class=element_class, category=category)
>   File 
> "/Users/palmieri/Desktop/Sage_stuff/sage_builds/clean/sage-6.10.rc0/local/lib/python2.7/site-packages/sage/rings/polynomial/polynomial_ring.py",
>  line 306, in __init__
> from sage.matrix.matrix_space import is_MatrixSpace
>   File 
> "/Users/palmieri/Desktop/Sage_stuff/sage_builds/clean/sage-6.10.rc0/local/lib/python2.7/site-packages/sage/matrix/matrix_space.py",
>  line 57, in 
> import matrix_mpolynomial_dense
> ImportError: 
> dlopen(/Users/palmieri/Desktop/Sage_stuff/sage_builds/clean/sage-6.10.rc0/local/lib/python2.7/site-packages/sage/matrix/matrix_mpolynomial_dense.so,
>  2): Library not loaded: libsingular.dylib
>   Referenced from: 
> /Users/palmieri/Desktop/Sage_stuff/sage_builds/clean/sage-6.10.rc0/local/lib/python2.7/site-packages/sage/matrix/matrix_mpolynomial_dense.so
>   Reason: image not found
> Sage failed to start up.
> Please email sage-devel (http://groups.google.com/group/sage-devel)
> explaining the problem and send the log file
>   
> /Users/palmieri/Desktop/Sage_stuff/sage_builds/clean/sage-6.10.rc0/logs/start.log
> Describe your computer, operating system, etc.
> make[2]: *** 
> [/Users/palmieri/Desktop/Sage_stuff/sage_builds/clean/sage-6.10.rc0/local/etc/sage-started.txt]
>  Error 1
> make[1]: *** [all] Error 2
> 
> 
> 
> On Wednesday, December 9, 2015 at 3:50:28 PM UTC-8, Volker Braun wrote:
> As always, you can get the latest beta version from the "develop" git branch. 
> Alternatively, the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html
> 
> 098b62d Updated Sage version to 6.10.rc0
> 2c4edac Trac #19668: Symmetric square L-functions for modular forms
> 4d6e860 Trac #19675: Move normalize_names() out of CategoryObject
> 11979c8 Trac #19643: BRiAl not building on cygwin
> 31843ae Trac #19438: generators given by as_permutation_group in the wrong 
> order
> 37d3d59 Trac #19035: Improve assumption documentation and doctest recent 
> improvements
> 790580d Trac #