Re: [sage-support] Re: Sage Survey 2009

2009-11-22 Thread William Stein
On Sat, Nov 21, 2009 at 10:56 AM, rjf  wrote:
> Harald asks, on Nov 19, 2009 what software readers  "know".   He oddly
> omits the several free computer algebra systems that are available. I
> assume that it is because he is trying to promulgate the impression
> that Sage is the only free system software alternative to Mathematica
> and Maple.  He also omits the (to me) logical entries for other
> possible programming language familiarity, e.g. C, C++, Java, PHP,
> Ruby, Perl, and Lisp, among others.
>
>
> Presuming it is entirely innocent that Harald omits Axiom, Reduce, and
> Maxima from this list, it would be easy enough to change the survey,
> and correct the omissions.
> Harald, in private email, says he has 150 responses already and has
> decided not change the survey.
> It is (here on the US west coast) the morning of Sat Nov 21, so the
> survey hasn't been out that long.  Oh well.

You seem incredibly concerned about the questions on the survey.  To
assuage your fears, it might help if we stop and think about the
*purpose* of the survey.   You might think we're going to write a
paper based on it, or that we're going to publish a bunch of charts
and tables on a webpage about the results of the survey.  Don't worry
-- the survey exists for one, and only one, reason: we would like to
get systematic feedback from users and potential users so that we can
make Sage a better system.  That's it.

Think of it like filling out a form after staying at the LA Hilton.
The form would ask you about your stay at the Hilton, and might very
well omit questions about Axiom, Reduce, and Maxima.

 -- William

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Re: [sage-support] Question about gcd and xgcd.

2009-11-22 Thread William Stein
On Sun, Nov 22, 2009 at 4:57 PM, Ricky Farr  wrote:
> Dear All,
>
> I'd like to sincerely thank you for your help before hand.  I'm having
> some issues that need to be straightened out.  I was under the
> impression that xgcd(a,b) returned (g,s,t) so that g = s*a + t*b,
> where g=gcd(a,b).  Please review the following code, and tell me why
> this happens:
>
> sage: Q. = PolynomialRing(ZZ);
> sage: gcd(x-2,x^3+2*x^2);
> 1
> sage: g,s,t = xgcd(x-2,x^3+2*x^2);
> sage: g
> 16
> sage: s*(x-2)+t*(x^3+2*x^2)
> 16
>
> I was under the impression, like I said that g would have been equal
> to 1.  Why is g, 16?

The ring ZZ[x] is not a principal ideal domain (e.g., the ideal (2, x)
isn't principal), so xgcd *can't* in general return polynomials s, t
such that g = s*a+t*b.A simple example is a=2*x and b=x^2. Then x
is the gcd, but you can't write x as a ZZ[x] linear combination of 2*x
and x^2, since the linear term of s*(2*x) + t*x^2 is even.


What it does return is the next best thing, which is s, t such that

   s*a + t*b = resultant(a,b),

assuming a, b are coprime (if they aren't, rescale so they are, do the
above, then multiply through).

Note that Sage just calls the FLINT library, and this behavior of xgcd
is documented there.

I did just maybe (?) find a bug in FLINT though (and certainly one in sage):
sage: gcd(Q(2),x^2)
1
sage: xgcd(Q(2),x^2)


Doing the same using NTL works fine:
sage: Q. = PolynomialRing(ZZ,implementation="NTL")
sage: type(x)

sage: gcd(Q(2),x^2)
1
sage: xgcd(Q(2),x^2)
(4, 2, 0)
sage: xgcd(x-2, x^3+2*x^2)
(16, -x^2 - 4*x - 8, 1)

So, the docs in Sage need to change to correctly define xgcd over a
non-PID.  Also, there is maybe a serious bug in FLINT.   This is now:

   http://trac.sagemath.org/sage_trac/ticket/7517

 -- William

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[sage-support] Question about gcd and xgcd.

2009-11-22 Thread Ricky Farr
Dear All,

I'd like to sincerely thank you for your help before hand.  I'm having
some issues that need to be straightened out.  I was under the
impression that xgcd(a,b) returned (g,s,t) so that g = s*a + t*b,
where g=gcd(a,b).  Please review the following code, and tell me why
this happens:

sage: Q. = PolynomialRing(ZZ);
sage: gcd(x-2,x^3+2*x^2);
1
sage: g,s,t = xgcd(x-2,x^3+2*x^2);
sage: g
16
sage: s*(x-2)+t*(x^3+2*x^2)
16

I was under the impression, like I said that g would have been equal
to 1.  Why is g, 16?

Thank You,

Rick

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[sage-support] Re: Sage Survey 2009

2009-11-22 Thread rjf
Harald asks, on Nov 19, 2009 what software readers  "know".   He oddly
omits the several free computer algebra systems that are available. I
assume that it is because he is trying to promulgate the impression
that Sage is the only free system software alternative to Mathematica
and Maple.  He also omits the (to me) logical entries for other
possible programming language familiarity, e.g. C, C++, Java, PHP,
Ruby, Perl, and Lisp, among others.


Presuming it is entirely innocent that Harald omits Axiom, Reduce, and
Maxima from this list, it would be easy enough to change the survey,
and correct the omissions.
Harald, in private email, says he has 150 responses already and has
decided not change the survey.
It is (here on the US west coast) the morning of Sat Nov 21, so the
survey hasn't been out that long.  Oh well.


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[sage-support] Re: bug: derivatives as dictionary keys

2009-11-22 Thread Alex Raichev
Sweet, Burcin.  I'll check out your patch.  Can you increase the
derivative orders to 20 something?

Alex

On Nov 23, 7:30 am, Burcin Erocal  wrote:
> Hi,
>
> On Sat, 21 Nov 2009 14:02:16 +0100
>
> Burcin Erocal  wrote:
> > I can't believe I'm looking at these hashes for the third time. I
> > finally took some time to think about this, and found an (almost)
> > perfect hash function to replace my previous braindead implementation.
> > I hope we won't run into this problem again. :)
>
> > This is now #7508:
>
> >http://trac.sagemath.org/sage_trac/ticket/7508
>
> There is a new pynac package linked from that ticket. You need to apply
> the patch from #7490 before you can run Sage with it.
>
> The new hash function doesn't have any collisions for a symbolic
> function with 10 arguments, up to derivatives of order 11. I used a
> customized FNV hash [1], with a prime multiplier chosen to accommodate
> the low integer values we get for each entry of the parameter set.
>
> [1]http://isthe.com/chongo/tech/comp/fnv/
>
> Cheers,
> Burcin

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[sage-support] Re: Problem in running sage notebook in secure mode on Mac OS X

2009-11-22 Thread pong
Sorry, I wasn't very clear, by "upgrade" I mean I downloaded

sage-4.2.1 sage-4.2.1-osx-10.5-32bit-i386-Darwin.dmg (using metalinks)

then drag-and-drop as usual. But that I got the aforementioned
problem.

Since I couldn't fix the problem. Later, I indeed "upgraded" sage from
prompt and the problem went away...
however there is another thing puzzling me: After the upgrade, sage is
upgraded just to 4.1.2 however, when I started the notebook, it shows
version 4.2.1.

Why is that, just a typo?



On Nov 22, 11:33 am, William Stein  wrote:
> On Sun, Nov 22, 2009 at 9:48 AM, pong  wrote:
> > I have just upgraded to Sage 4.2.1 and when I tried to run the
> > notebook server securely by
>
> Instead of upgrading, please download and install sage-4.2.1.
>
>  -- William
>
>
>
>
>
> > notebook(secure=True, open_viewer=False)
>
> > SAGE complains:
>
> > 
> > *                                                  *
> > * Open your web browser tohttps://localhost:8000 *
> > *                                                  *
> > 
> > There is an admin account.  If you do not remember the password,
> > quit the notebook and type notebook(reset=True).
> > Note: GNUTLS not available.
> > Traceback (most recent call last):
> >  File "/Applications/sage/local/lib/python2.6/site-packages/twisted/
> > application/app.py", line 694, in run
> >    runApp(config)
>
> > the error message goes on and on. But I'd rather not posting all here.
> > Any help on this?
> > Also, 1) the notebook server starts without problem in the non-secure
> > mode.
> >         2) I did install guntls via Darwin Port. How can I make it
> > available for sage (it complaints that gnutls is not available).
>
> > Thanks in advance
>
> > --
> > To post to this group, send email to sage-support@googlegroups.com
> > To unsubscribe from this group, send email to 
> > sage-support-unsubscr...@googlegroups.com
> > For more options, visit this group 
> > athttp://groups.google.com/group/sage-support
> > URL:http://www.sagemath.org
>
> --
> William Stein
> Associate Professor of Mathematics
> University of Washingtonhttp://wstein.org

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Re: [sage-support] Re: Ctrl-Backspace behavior

2009-11-22 Thread cool-RR
>
>
> I greatly appreciate your pointing out the ctrl-backspace discrepancy.
>
> However, I'm concerned that your level of rudeness is not appropriate
> for this list.
>
>  -- William
>
>
Okay, I'm sorry. I'll try to be more polite.

Ram.

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Re: [sage-support] Problem in running sage notebook in secure mode on Mac OS X

2009-11-22 Thread William Stein
On Sun, Nov 22, 2009 at 9:48 AM, pong  wrote:
> I have just upgraded to Sage 4.2.1 and when I tried to run the
> notebook server securely by

Instead of upgrading, please download and install sage-4.2.1.

 -- William

>
> notebook(secure=True, open_viewer=False)
>
> SAGE complains:
>
> 
> *                                                  *
> * Open your web browser to https://localhost:8000  *
> *                                                  *
> 
> There is an admin account.  If you do not remember the password,
> quit the notebook and type notebook(reset=True).
> Note: GNUTLS not available.
> Traceback (most recent call last):
>  File "/Applications/sage/local/lib/python2.6/site-packages/twisted/
> application/app.py", line 694, in run
>    runApp(config)
>
> the error message goes on and on. But I'd rather not posting all here.
> Any help on this?
> Also, 1) the notebook server starts without problem in the non-secure
> mode.
>         2) I did install guntls via Darwin Port. How can I make it
> available for sage (it complaints that gnutls is not available).
>
> Thanks in advance
>
> --
> To post to this group, send email to sage-support@googlegroups.com
> To unsubscribe from this group, send email to 
> sage-support-unsubscr...@googlegroups.com
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> URL: http://www.sagemath.org



-- 
William Stein
Associate Professor of Mathematics
University of Washington
http://wstein.org

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Re: [sage-support] Re: Ctrl-Backspace behavior

2009-11-22 Thread William Stein
On Sun, Nov 22, 2009 at 11:15 AM, ram.rac...@gmail.com
 wrote:
> I'm not too experienced with Linux, but now I opened up the Linux GUI
> on my Sage VM, and tried a bunch of text editors and a web browser.
> They all respect ctrl-backspace as deleting a word. Why does Sage do
> differently? Why? Is this the right place to try and change the
> accepted use of ctrl-backspace? Maybe we should use ctrl-w for copy
> and ctrl-z for paste, just for kicks?
>
> Ram.

I greatly appreciate your pointing out the ctrl-backspace discrepancy.

However, I'm concerned that your level of rudeness is not appropriate
for this list.

 -- William

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[sage-support] Re: Ctrl-Backspace behavior

2009-11-22 Thread ram.rac...@gmail.com
I'm not too experienced with Linux, but now I opened up the Linux GUI
on my Sage VM, and tried a bunch of text editors and a web browser.
They all respect ctrl-backspace as deleting a word. Why does Sage do
differently? Why? Is this the right place to try and change the
accepted use of ctrl-backspace? Maybe we should use ctrl-w for copy
and ctrl-z for paste, just for kicks?

Ram.

On Nov 22, 8:58 pm, Michael Orlitzky  wrote:
> ram.rac...@gmail.com wrote:
> > It's accepted, at least on Windows, that ctrl-backspace deletes a word
> > (And sometimes a bunch of spaces/returns around it.) This is true in
> > IDEs, and actually in every text area in almost every program I can
> > think of.
>
> Somewhat interesting back-story:
>
>    http://blogs.msdn.com/oldnewthing/archive/2007/10/11/5395501.aspx
>
> As a result, most Windows programs include this functionality by way of
> the default Windows edit controls. Exceptions do occur in cases where a
> custom edit control is used (i.e. IDEs), but for the most part, it works.
>
> On Linux, this is an Emacs keybinding that has found its way into at
> least three of the major toolkits, GTK, QT, and Wx. I don't know whether
> it was inspired by Emacs, or simply meant to mimic the Windows edit control.
>
> On the web, CKEditor and TinyMCE include it per user request.
>
> On Mac, who knows.
>
> It could be worse. As an Emacs user, attempting to backspace over a word
> typically results in bolding the entire document and printing it down
> the hall while I'm helpless to intervene because the File->Save As menu
> has opened.

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[sage-support] Re: Something like Mathematica's `Interact`?

2009-11-22 Thread Nasser Abbasi


On Nov 21, 3:53 pm, William Stein  wrote:

> I have the impression that Maplets are somewhat different than
> Mathematica's Manipulate and Sage's @interact.  I'm not so familiar
> with them -- I read about them online just now, and it seems like they
> are basically a Maple interface to a subset of the Java Swing GUI API.
>   I *just* tried to use one from the official Maple website, and it
> promptly completely crashed Firefox (latest version, on OS X).
> Luckily gmail saved my message so I didn't loose this email!
>

There is also Google's Mapplets, not to be confused with Maple Maplets

http://code.google.com/apis/maps/documentation/mapplets/
http://www.adeptscience.co.uk/products/mathsim/maple/primes/maplets.html

Wonder if MapleSoft can bring a lawsuit against google for name
infringement here?
This is one way Maplesoft can make few easy millions of dollars? :)

Notice when searching for "maple maplets", google suggests a name
correction to "mapplets". Very smart.

I do not dare touch a Maple maplet any more, since every time I tried,
all sort of Java errors popup in my browser, many times freezing it or
worst. I never did like Maplets myself. I need to try sage interact
more sometime. But I do like Mathematica Manipulate. It is complicated
and it takes time to learn.

>
> William

--Nasser

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[sage-support] Re: Something like Mathematica's `Interact`?

2009-11-22 Thread Nasser Abbasi


On Nov 21, 3:53 pm, William Stein  wrote:

> I have the impression that Maplets are somewhat different than
> Mathematica's Manipulate and Sage's @interact.  I'm not so familiar
> with them -- I read about them online just now, and it seems like they
> are basically a Maple interface to a subset of the Java Swing GUI API.
>   I *just* tried to use one from the official Maple website, and it
> promptly completely crashed Firefox (latest version, on OS X).
> Luckily gmail saved my message so I didn't loose this email!
>

There is also Google's Mapplets, not to be confused with Maple Maplets

http://code.google.com/apis/maps/documentation/mapplets/
http://www.adeptscience.co.uk/products/mathsim/maple/primes/maplets.html

Wonder if MapleSoft can bring a lawsuit against google for name
infringement here?
This is one way Maplesoft can make few easy millions of dollars? :)

Notice when searching for "maple maplets", google suggests a name
correction to "mapplets". Very smart.

I do not dare touch a Maple maplet any more, since every time I tried,
all sort of Java errors popup in my browser, many times freezing it or
worst. I never did like Maplets myself. I need to try sage interact
more sometime. But I do like Mathematica Manipulate. It is complicated
and it takes time to learn.

>
> William

--Nasser

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Re: [sage-support] Re: Ctrl-Backspace behavior

2009-11-22 Thread Michael Orlitzky
ram.rac...@gmail.com wrote:
> It's accepted, at least on Windows, that ctrl-backspace deletes a word
> (And sometimes a bunch of spaces/returns around it.) This is true in
> IDEs, and actually in every text area in almost every program I can
> think of.

Somewhat interesting back-story:

   http://blogs.msdn.com/oldnewthing/archive/2007/10/11/5395501.aspx

As a result, most Windows programs include this functionality by way of 
the default Windows edit controls. Exceptions do occur in cases where a 
custom edit control is used (i.e. IDEs), but for the most part, it works.

On Linux, this is an Emacs keybinding that has found its way into at 
least three of the major toolkits, GTK, QT, and Wx. I don't know whether 
it was inspired by Emacs, or simply meant to mimic the Windows edit control.

On the web, CKEditor and TinyMCE include it per user request.

On Mac, who knows.

It could be worse. As an Emacs user, attempting to backspace over a word 
typically results in bolding the entire document and printing it down 
the hall while I'm helpless to intervene because the File->Save As menu 
has opened.

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Re: [sage-support] Re: bug: derivatives as dictionary keys

2009-11-22 Thread Burcin Erocal
Hi,

On Sat, 21 Nov 2009 14:02:16 +0100
Burcin Erocal  wrote:

> I can't believe I'm looking at these hashes for the third time. I
> finally took some time to think about this, and found an (almost)
> perfect hash function to replace my previous braindead implementation.
> I hope we won't run into this problem again. :)
> 
> This is now #7508:
> 
> http://trac.sagemath.org/sage_trac/ticket/7508

There is a new pynac package linked from that ticket. You need to apply
the patch from #7490 before you can run Sage with it.

The new hash function doesn't have any collisions for a symbolic
function with 10 arguments, up to derivatives of order 11. I used a
customized FNV hash [1], with a prime multiplier chosen to accommodate
the low integer values we get for each entry of the parameter set. 

[1] http://isthe.com/chongo/tech/comp/fnv/

Cheers,
Burcin

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Re: [sage-support] problem with sage -upgrade

2009-11-22 Thread Stan Schymanski
Thanks, William! Unfortunately, this did not solve the issue. I am still 
getting the message "TypeError: Unable to start maxima".

Stan

William Stein wrote:
> On Fri, Nov 20, 2009 at 1:58 AM, Stan Schymanski  wrote:
>   
>> Did the upgrade still work for you?
>> Mine ended normally, but if I start the notebook and want to do
>> something, I get the message that maxima could not be started. I'll have
>> to compile from source (again).
>> 
>
> Try forcing rebuilding of the maxima spkg.
>
>  sage -f maxima-5.19.1.p0
>
> William
>
>
>   
>> Cheers
>> Stan
>>
>> Minh Nguyen wrote:
>> 
>>> Hi Stan,
>>>
>>> On Thu, Nov 19, 2009 at 9:31 PM, Stan Schymanski  wrote:
>>>
>>>   
 Dear all,

 I compiled sage 4.2 from source on my Macbook Pro with OSX 10.4.11 and
 when I tried sage -upgrade, I was asked to enter a commit message. I
 aborted (by typing :q) and the upgrade is continuing now, but this
 does not seem normal. Did anyone else experience something similar?

 
>>> Yes. I was asked to enter a commit message because the README file has
>>> changed. I suspect that the executable bits have changed. The README
>>> file should have no executable bits.
>>>
>>>
>>>   
>> --
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>> http://groups.google.com/group/sage-support
>> URL: http://www.sagemath.org
>> 
>
>
>
>   

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[sage-support] Re: Ctrl-Backspace behavior

2009-11-22 Thread ram.rac...@gmail.com

It's accepted, at least on Windows, that ctrl-backspace deletes a word
(And sometimes a bunch of spaces/returns around it.) This is true in
IDEs, and actually in every text area in almost every program I can
think of.

On Nov 22, 7:55 pm, "ma...@mendelu.cz"  wrote:
> On 22 lis, 14:59, "ram.rac...@gmail.com"  wrote:
>
> > Why when I do ctrl-backspace it backs up into the upper cell, instead
> > of deleting a word?
>
> The answer is simple: ctrl+backspace is shortcut for joining cells.
>
> Why shhould ctrl+backspace delete word?
>
> Robert Marik

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[sage-support] Re: Ctrl-Backspace behavior

2009-11-22 Thread ma...@mendelu.cz


On 22 lis, 14:59, "ram.rac...@gmail.com"  wrote:
> Why when I do ctrl-backspace it backs up into the upper cell, instead
> of deleting a word?

The answer is simple: ctrl+backspace is shortcut for joining cells.

Why shhould ctrl+backspace delete word?

Robert Marik

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[sage-support] Problem in running sage notebook in secure mode on Mac OS X

2009-11-22 Thread pong
I have just upgraded to Sage 4.2.1 and when I tried to run the
notebook server securely by

notebook(secure=True, open_viewer=False)

SAGE complains:


*  *
* Open your web browser to https://localhost:8000  *
*  *

There is an admin account.  If you do not remember the password,
quit the notebook and type notebook(reset=True).
Note: GNUTLS not available.
Traceback (most recent call last):
  File "/Applications/sage/local/lib/python2.6/site-packages/twisted/
application/app.py", line 694, in run
runApp(config)

the error message goes on and on. But I'd rather not posting all here.
Any help on this?
Also, 1) the notebook server starts without problem in the non-secure
mode.
 2) I did install guntls via Darwin Port. How can I make it
available for sage (it complaints that gnutls is not available).

Thanks in advance

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[sage-support] Re: Something like Mathematica's `Interact`?

2009-11-22 Thread mark mcclure
On Nov 21, 5:11 pm, William Stein  wrote:
> Let's get real about this math software patent discussion.
> Mathematica, Magma, and Maple have no software patents.  
> Matlab, on the other hand...
> This link gives *97* (!) registered patents by Mathworks (makers of MATLAB):
> ...
> Let's put Mathworks out of business.

This seems to me to be an overly harsh statement towards a
generally respectable company.  While no company is perfect,
The Mathworks has long been a huge supporter of some of the
most fundamental and important open source, mathematical
software.  Cleve Moler, who founded The Mathworks, was one
of the primary authors of two important and freely
distributable computational libraries in the 1970s: Linpack
(the predecessor to Lapack) and Eispack. While no member of
The Mathworks is listed as an author of Lapack, the company
plays an active role in its development. I believe the same
is true of Blas.  Moler has long been on the directory board
of Netlib, which is certainly the largest repository of
freely available software for numerical analysis in
existence, and a number of other Mathworks employees are
involved with Netlib as well.

Mark McClure

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[sage-support] Ctrl-Backspace behavior

2009-11-22 Thread ram.rac...@gmail.com
Why when I do ctrl-backspace it backs up into the upper cell, instead
of deleting a word?

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Re: [sage-support] Re: publishing a program written with Sage in complement of a scientific article

2009-11-22 Thread Carlo Hamalainen
On Sat, Nov 21, 2009 at 11:20 PM, Laurent  wrote:
> If someone think that Sage will be improved by knowing 10 matrices of
> so(2,3), ok, I will think about making it well. If not, I will follow
> the way of Carlo, and register myself in the list of article that cite
> Sage :)

Also note that you can give a URL to the latest version of the source
of an arXiv paper (e.g. my paper http://arxiv.org/abs/0712.0233 the
source URL http://arxiv.org/e-print/0712.0233v1 for the first version
and http://arxiv.org/e-print/0712.0233 refers to the latest version).
So you can upload a paper and then add the source URL to your
references. If you do that quickly (within the first  24 hours I
think) then arxiv.org only announces one version of your paper so it
doesn't look like you made a mistake. Hope that's clear :)

-- 
Carlo Hamalainen
http://carlo-hamalainen.net

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