Re: [spctools-discuss] Navigating peptideSieve Tips/Tricks?

2023-08-01 Thread 'David Shteynberg' via spctools-discuss 
Sure!  This was my command:

[image: image.png]


On Tue, Aug 1, 2023 at 10:48 AM sophie culos  wrote:

> David, would you be at all willing to post the code that you were using?
> I'll give "/" a shot in my path definitions.
>
>
>
> On Tuesday, August 1, 2023 at 10:35:06 AM UTC-7 David Shteynberg wrote:
>
>> For what it is worth, yesterday I downloaded the PeptideSieve and ran it
>> on my system commandline to generate non-empty output files successfully.
>> I used '/' in my path definitions, but I am not sure it that makes a
>> difference.  Good luck!
>>
>> On Tue, Aug 1, 2023 at 1:21 AM 'Luis Mendoza' via spctools-discuss <
>> spctools...@googlegroups.com> wrote:
>>
>>> Hello Sophie,
>>> I don't have much help to offer at this point, since we have not used
>>> that software in a very long time.  But one thing I notice from your
>>> screenshots is that the folder/directory name appears to have a space in
>>> "MS User", which is not present in the commands, e.g.
>>> "C:\Users\msuser\TPP\...".  Perhaps this is causing the errors you observe?
>>> Cheers,
>>> --Luis
>>>
>>> On Mon, Jul 31, 2023 at 4:54 PM sophie culos  wrote:
>>>
 Hello,

 I am trying to use peptideSieve for an in silico digestion to identify
 proteotypic peptides for MALDI.

 I've attached a screenshot of what I've been inputting into the command
 line and the error I've been consistently getting. The output file is
 always blank,  and I'm not sure how to proceed.

 Any help would be very much appreciated!

 Cheers,
 Sophie
 [image: peptideSieve error.PNG]



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Re: [spctools-discuss] Navigating peptideSieve Tips/Tricks?

2023-08-01 Thread sophie culos 
David, would you be at all willing to post the code that you were using? 
I'll give "/" a shot in my path definitions. 



On Tuesday, August 1, 2023 at 10:35:06 AM UTC-7 David Shteynberg wrote:

> For what it is worth, yesterday I downloaded the PeptideSieve and ran it 
> on my system commandline to generate non-empty output files successfully.  
> I used '/' in my path definitions, but I am not sure it that makes a 
> difference.  Good luck!
>
> On Tue, Aug 1, 2023 at 1:21 AM 'Luis Mendoza' via spctools-discuss <
> spctools...@googlegroups.com> wrote:
>
>> Hello Sophie,
>> I don't have much help to offer at this point, since we have not used 
>> that software in a very long time.  But one thing I notice from your 
>> screenshots is that the folder/directory name appears to have a space in 
>> "MS User", which is not present in the commands, e.g. 
>> "C:\Users\msuser\TPP\...".  Perhaps this is causing the errors you observe?
>> Cheers,
>> --Luis
>>
>> On Mon, Jul 31, 2023 at 4:54 PM sophie culos  wrote:
>>
>>> Hello,
>>>
>>> I am trying to use peptideSieve for an in silico digestion to identify 
>>> proteotypic peptides for MALDI. 
>>>
>>> I've attached a screenshot of what I've been inputting into the command 
>>> line and the error I've been consistently getting. The output file is 
>>> always blank,  and I'm not sure how to proceed. 
>>>
>>> Any help would be very much appreciated! 
>>>
>>> Cheers,
>>> Sophie 
>>> [image: peptideSieve error.PNG]
>>>
>>>
>>>
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>>> https://groups.google.com/d/msgid/spctools-discuss/3017c88a-3ac5-4c9d-a8f1-34e9da686575n%40googlegroups.com
>>>  
>>> 
>>> .
>>>
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> To view this discussion on the web visit 
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>>  
>> 
>> .
>>
>

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