RE: Re:[tips] my crummy knowledge of stats

2013-01-17 Thread Paul C Bernhardt
If you want to bend the assumptions of statistics to this degree (and I'm not 
saying it is wrong, because there is plenty of evidence to support the 
robustness of t-test and ANOVA to all kinds of violations of assumptions, 
though I'm not sure about this particular choice, I'd want validating study to 
back me up), why not go for two-way within-subjects ANOVA? One variable is 
pre-post and the other is question number. 

Paul

From: Mike Wiliams [jmicha5...@aol.com]
Sent: Thursday, January 17, 2013 12:19 AM
To: Teaching in the Psychological Sciences (TIPS)
Subject: Re:[tips] my crummy knowledge of stats

You can use a conventional paired t test.  Although you have dichotomous
scores that does not mean they are categorical.  Correct/incorrect is a
ratio scale of 1 unit.

Green/Red, Accountant/Psychologist are the type of categorical
dichotomies that bring in the nonparametric procedures like Chi-square
or ranking tests.

Just calculate a mean difference and variance for each item and analyze
them the usual way.  You might also try some of the test reliability
stats that are now in
SPSS, such as coefficient alpha.  Alpha is a general index of how well
the items intercorrelate or hang together.

Mike Williams

 - Original Message -

 From: Annette Taylortay...@sandiego.edu
 To: Teaching in the Psychological Sciences 
 (TIPS)tips@fsulist.frostburg.edu
 Sent: Tuesday, January 15, 2013 6:21:42 PM
 Subject: [tips] my crummy knowledge of stats

 I know this is a basic question but here goes:

 I have categorical data, 0,1 which stands for incorrect (0) or correct (1) on 
 a test item.

 I have 25 items and I have a pretest and a posttest and I want to know on 
 which items students improved significantly, and not just by chance. Just 
 eyeballing the data I can tell that there are some on which the improved 
 quite a bit, some not at all and some are someplace in the middle and I can't 
 make a guess at all. That is why we have statistics. Yeah!  
 hbleh.

 As far as I know, the best thing to do is a chi-square test for each of 25 
 items; but of course that will mean that with a .05 sig level I will have at 
 least one false positive, maybe more, but most assuredly at least one. This 
 seems to be a risk. At any rate I can use SPSS and the crosstabs command 
 allow for calculation of the chi-square.

 I know that when I do planned comparisons with multiple t-tests, I can do a 
 Simes' correction in which I can rank order my final, obtained alphas, and 
 adjust for the number of comparisons and reject from the point from which the 
 obtained alpha failed to exceed the corrected-for-number-of-comps alpha. But 
 as far as I know, I cannot do that with 25 chi square tests. There is 
 probably some reason why I can no more do that, that relates to the reason 
 for why I cannot do 25 t-tests in this situation with categorical data.

 Is there a better way to answer my research question? I need a major 
 professor! Oh wait, that's me... drat! I need to hire a statistician. Oh 
 wait, I'd need $$ for that and I don't have any. So I hope tipsters can stand 
 in as a quasi-hired-statistician and help me out.

 Oh, I get the digest. I don't mind waiting until tomorrow or the next day for 
 a response, but a backchannel is fine.tay...@sandiego.edu

 I will be at APS this year. Any other tipsters planning to be there? Let's 
 have a party! I'd love to put personalities to names.

 Thanks

 Annette

 Annette Kujawski Taylor, Ph. D.
 Professor, Psychological Sciences
 University of San Diego
 5998 Alcala Park
 San Diego, CA 92110
 tay...@sandiego.edu


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Re: [tips] Professor says students can't identify continents on map - Nfld. Labrador - CBC News

2013-01-17 Thread Christopher Green
Point taken, Paul. But you don't have to want to stand in the front of the room 
in
order for it to be important to know a few basic things. Especially if you're 
going to be asked to vote on questions like: Should we go to war in Asia 
(again)? Should we give aid to Africa? Should we have free trade with Europe?
Should we drill in the Arctic? What effect is the war on drugs having on 
South 
America?

Knowledge good. Ignorance bad. That is all.

Chris
---
Christopher D. Green
Department of Psychology
York University
Toronto, ON M3J 1P3
Canada

chri...@yorku.ca
http://www.yorku.ca/christo/
=

On 2013-01-16, at 2:51 PM, Paul C Bernhardt wrote:

  We are the ones standing in the front of the room… the rest of the folks in 
 our classes are outside the room doing other work with their lives. Our 
 students are wondering what kind of freaks we are, except for one or two 
 students in the class who, one day, will be standing in front of their room. 
 When they leave your room they go surf to the Wikipedia page on flags, and 
 maybe edit the entries on one or two things they've learned about…
 
 Not everyone wants to be the person in the front of the room.
 
 Paul
 
 On Jan 16, 2013, at 2:15 PM, Christopher Green wrote:
 
  
 
  
 
  
 
 This is true Nancy. But I remember learning maps and flags as a kid because 
 I liked them, not because some govt threatened me with a standardized test 
 (or even because some teacher decided to include them in the curriculum. 
 Whatever happened to the people who just have to know?
 
 Chris
 -
 Christopher D. Green
 Department of Psychology
 York University
 Toronto, ON M6C 1G4
 Canada
 
 chri...@yorku.ca
 
 On Jan 16, 2013, at 12:16 AM, drnanjo drna...@aol.com wrote:
 
  
  
  
 I wonder if it is possibly a reflection of the priorities of our education 
 system.
  
 I remember taking Geography in elementary school.
  
 I don't remember having standardized testing on Geography.
 But plenty on other subjects.
  
 It it possible that this is one of the side effects of teaching to the 
 test...
  
 It wouldn't surprise me if Geography had been eliminated in most 
 curriculums in favor of subjects more likely to command space on 
 standardized tests.
  
 Nancy Melucci
 Long Beach City College
 Long Beach CA
 -Original Message-
 From: Christopher Green chri...@yorku.ca
 To: Teaching in the Psychological Sciences (TIPS) 
 tips@fsulist.frostburg.edu
 Sent: Tue, Jan 15, 2013 9:11 pm
 Subject: [tips] Professor says students can't identify continents on map - 
 Nfld.  Labrador - CBC News
 
  
 
  
 
  
 
 Time was that I would give history of psychology students a map test of 
 European countries. On average, they got a little over 4 -- usually UK, 
 France, Italy, and whatever country their ancestors came from. It got so 
 depressing that I stopped. It seems I was expecting way too much. This 
 sociology professor finds that her students can't even name continents. 
 Sigh.
 http://www.cbc.ca/news/canada/newfoundland-labrador/story/2013/01/14/nl-students-dont-know-geography-115.html
 
 
 Chris
 ---
 Christopher D. Green
 Department of Psychology
 York University
 Toronto, ON M3J 1P3
 Canada
 
 chri...@yorku.ca
 http://www.yorku.ca/christo/
 =
 
 
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or 

[tips] Would You Take S#!t From Anybody?

2013-01-17 Thread Mike Palij

Some new medical research shows that for people with gastrointestinal
illness arising from the use of antibiotics appear to do much better after a
fecal transplant.

I kid you not.

The NY Times has an article that provides a popular media account of
the research and can be accessed here:
http://www.nytimes.com/2013/01/17/health/disgusting-maybe-but-treatment-works-study-finds.html?_r=0pagewanted=all

There are various ways that the transplant can be done, including an
old Chinese method.  All I'm saying is that at lunch, avoid the yellow
soup and the chocolate milk.

The research article was published in the New England Journal of Medicine
and the publisher has made access to the article free; see:
http://www.nejm.org/doi/pdf/10.1056/NEJMoa1205037

As with most medical procedures, don't try this at home unless you're
under medical supervision.

-Mike Palij
New York University
m...@nyu.edu

P.S. For some reason this reminds me of the British movie Layer Cake
in which Daniel Craig starred before he became the new James Bond.
There's a scene between Craig and Michael Gambon (who played
Dumbledore in the Harry Potter movies) where Gambon explain the
facts of life to Craig (well, the facts of life as a senior gangster see 
them

and tries to impress them into a younger gangster).  Recent Ph.D.s desiring
an academic career might benefit from viewing this scene (the movie
is actually quite good for a British crime/drug deal gone wrong genre
piece).



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Re: [tips] Professor says students can't identify continents on map - Nfld. Labrador - CBC News

2013-01-17 Thread Paul C Bernhardt
I am in full agreement on that… sadly, we have a (US) culture that invalidates 
intellectual curiosity in favor of sensationalism and truthiness.

Paul

On Jan 17, 2013, at 8:36 AM, Christopher Green wrote:







Point taken, Paul. But you don't have to want to stand in the front of the room 
in
order for it to be important to know a few basic things. Especially if you're
going to be asked to vote on questions like: Should we go to war in Asia
(again)? Should we give aid to Africa? Should we have free trade with Europe?
Should we drill in the Arctic? What effect is the war on drugs having on South
America?

Knowledge good. Ignorance bad. That is all.

Chris
---
Christopher D. Green
Department of Psychology
York University
Toronto, ON M3J 1P3
Canada

chri...@yorku.camailto:chri...@yorku.ca
http://www.yorku.ca/christo/
=

On 2013-01-16, at 2:51 PM, Paul C Bernhardt wrote:

 We are the ones standing in the front of the room… the rest of the folks in 
our classes are outside the room doing other work with their lives. Our 
students are wondering what kind of freaks we are, except for one or two 
students in the class who, one day, will be standing in front of their room. 
When they leave your room they go surf to the Wikipedia page on flags, and 
maybe edit the entries on one or two things they've learned about…

Not everyone wants to be the person in the front of the room.

Paul

On Jan 16, 2013, at 2:15 PM, Christopher Green wrote:







This is true Nancy. But I remember learning maps and flags as a kid because I 
liked them, not because some govt threatened me with a standardized test (or 
even because some teacher decided to include them in the curriculum. Whatever 
happened to the people who just have to know?

Chris
-
Christopher D. Green
Department of Psychology
York University
Toronto, ON M6C 1G4
Canada

chri...@yorku.camailto:chri...@yorku.ca

On Jan 16, 2013, at 12:16 AM, drnanjo drna...@aol.commailto:drna...@aol.com 
wrote:




I wonder if it is possibly a reflection of the priorities of our education 
system.

I remember taking Geography in elementary school.

I don't remember having standardized testing on Geography.
But plenty on other subjects.

It it possible that this is one of the side effects of teaching to the test...

It wouldn't surprise me if Geography had been eliminated in most curriculums in 
favor of subjects more likely to command space on standardized tests.

Nancy Melucci
Long Beach City College
Long Beach CA
-Original Message-
From: Christopher Green chri...@yorku.camailto:chri...@yorku.ca
To: Teaching in the Psychological Sciences (TIPS) 
tips@fsulist.frostburg.edumailto:tips@fsulist.frostburg.edu
Sent: Tue, Jan 15, 2013 9:11 pm
Subject: [tips] Professor says students can't identify continents on map - 
Nfld.  Labrador - CBC News







Time was that I would give history of psychology students a map test of 
European countries. On average, they got a little over 4 -- usually UK, France, 
Italy, and whatever country their ancestors came from. It got so depressing 
that I stopped. It seems I was expecting way too much. This sociology professor 
finds that her students can't even name continents. Sigh.
http://www.cbc.ca/news/canada/newfoundland-labrador/story/2013/01/14/nl-students-dont-know-geography-115.html


Chris
---
Christopher D. Green
Department of Psychology
York University
Toronto, ON M3J 1P3
Canada

chri...@yorku.camailto:chri...@yorku.ca
http://www.yorku.ca/christo/
=


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Re: [tips] Would You Take S#!t From Anybody?

2013-01-17 Thread michael sylvester
When I was an undergrad at Gannon U in Erie,Pa,my Psych prof,John J. 
Fleming,used to surprise the class by writing


sh t on the board as an example of perceptual defense.
I also noted that in an intro text,Robert Ornstein,states that the 
hypothalamus

controls the 4 Fs;
feeding
fighting
fleeing
and sexual behavior

michael 



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[tips] What think ye of Sanjay Gupta?

2013-01-17 Thread michael sylvester
Didn't he support facilitation?

michael
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Re: [tips] Would You Take S#!t From Anybody?

2013-01-17 Thread Beth Benoit
Mike,
I know it's pretty hard to resist the temptation to make scatological jokes
about this, but believe me, people with severe Crohn's and ulcerative
colitis who are undergoing this treatment get very tired of it. Also, you
misread the cause of the illness:  it's not always a result of taking
antibiotics but from *Clostridium difficile* infections that aren't cured
by antibiotics. If you are terribly sick all the time, wasting away,
occasionally having accidents in public and feel you'd rather die than
continue to live like that, you'll try anything rather than endure a
helpless and hopeless chronic inflammatory disease.  As disgusting as it
may sound to the uninitiated, it's beginning to get a decent track record,
as the article stated.

Proctologists and gastroenterologists endure a lifetime of childish jokes
like this, but point out that the gut is a fascinating thing to study and
marvel at it.

I suggest that on a professional website like ours, we don't need to make
juvenile jokes about this, and might consider empathy for people who will
potentially profit from this treatment.

Beth Benoit
Granite State College
Plymouth State University
New Hampshire

On Thu, Jan 17, 2013 at 8:43 AM, Mike Palij m...@nyu.edu wrote:

 Some new medical research shows that for people with gastrointestinal
 illness arising from the use of antibiotics appear to do much better after
 a
 fecal transplant.

 I kid you not.

 The NY Times has an article that provides a popular media account of
 the research and can be accessed here:
 http://www.nytimes.com/2013/**01/17/health/disgusting-maybe-**
 but-treatment-works-study-**finds.html?_r=0pagewanted=allhttp://www.nytimes.com/2013/01/17/health/disgusting-maybe-but-treatment-works-study-finds.html?_r=0pagewanted=all

 There are various ways that the transplant can be done, including an
 old Chinese method.  All I'm saying is that at lunch, avoid the yellow
 soup and the chocolate milk.

 The research article was published in the New England Journal of Medicine
 and the publisher has made access to the article free; see:
 http://www.nejm.org/doi/pdf/**10.1056/NEJMoa1205037http://www.nejm.org/doi/pdf/10.1056/NEJMoa1205037

 As with most medical procedures, don't try this at home unless you're
 under medical supervision.

 -Mike Palij
 New York University
 m...@nyu.edu

 P.S. For some reason this reminds me of the British movie Layer Cake
 in which Daniel Craig starred before he became the new James Bond.
 There's a scene between Craig and Michael Gambon (who played
 Dumbledore in the Harry Potter movies) where Gambon explain the
 facts of life to Craig (well, the facts of life as a senior gangster see
 them
 and tries to impress them into a younger gangster).  Recent Ph.D.s desiring
 an academic career might benefit from viewing this scene (the movie
 is actually quite good for a British crime/drug deal gone wrong genre
 piece).



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[tips] Promoting the major at VSU one brochure at a time...

2013-01-17 Thread Deborah S. Briihl


I have been put in charge of creating a promotional material pamphlet/brochure 
for the undergraduate psych program here at VSU (the single sheet, trifold 
type). Now before anyone asks silly questions such as Isn't this on your 
webpage? and Why should you create promotional materials when you do not have 
enough seats for your students now? - trust me, those questions were asked and 
I am still in charge of creating this. Does anyone have a brochure that they 
give their students? Can I see what you include?



Deborah Briihl, PhD
Dept. of Psychology and Counseling
Valdosta State University
229-333-5994
dbri...@valdosta.edumailto:dbri...@valdosta.edu

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Re: [tips] Would You Take S#!t From Anybody?

2013-01-17 Thread Mike Palij

Dear Beth,

*Mea Culpa mode on*
I want to say to Beth and anyone else that I may have offended
with my post on Taking S#!t from others, I am sincerely sorry
that I have offended you and will endeavor in the future to more
tightly monitor my behavior/writing and edit out anything that
anyone could possibly find offensive.  I hope that you can
find it within yourselves to accept my apologies.
I would just like to note that the main point of the post was that
Taking S#!t from others appears to be a good thing though
some people might find Taking S#!t offensive and/or juvenile.
In which case, don't take any s#!t from anyone.
*Mea Culpa mode off*

So, I think I will go away now, pick up a copy of one of Albert Ellis'
books and try to find out why I am responsible for other people's
feeling and how to deal with folks who need a humor implant.

-Mike Palij
New York University
m...@nyu.edu

P.S.  To Prof. Sylvester:  life is unfair, and then you live in
Daytona Beach.


-- Original Message - 
On Thu, 17 Jan 2013 07:12:48 -0800, Beth Benoit wrote:


Mike,
I know it's pretty hard to resist the temptation to make scatological jokes
about this, but believe me, people with severe Crohn's and ulcerative
colitis who are undergoing this treatment get very tired of it. Also, you
misread the cause of the illness:  it's not always a result of taking
antibiotics but from *Clostridium difficile* infections that aren't cured
by antibiotics. If you are terribly sick all the time, wasting away,
occasionally having accidents in public and feel you'd rather die than
continue to live like that, you'll try anything rather than endure a
helpless and hopeless chronic inflammatory disease.  As disgusting as it
may sound to the uninitiated, it's beginning to get a decent track record,
as the article stated.
Proctologists and gastroenterologists endure a lifetime of childish jokes
like this, but point out that the gut is a fascinating thing to study and
marvel at it.

I suggest that on a professional website like ours, we don't need to make
juvenile jokes about this, and might consider empathy for people who will
potentially profit from this treatment.

Beth Benoit
Granite State College
Plymouth State University
New Hampshire

On Thu, Jan 17, 2013 at 8:43 AM, Mike Palij m...@nyu.edu wrote:


Some new medical research shows that for people with gastrointestinal
illness arising from the use of antibiotics appear to do much better after
a
fecal transplant.

I kid you not.

The NY Times has an article that provides a popular media account of
the research and can be accessed here:
http://www.nytimes.com/2013/**01/17/health/disgusting-maybe-**
but-treatment-works-study-**finds.html?_r=0pagewanted=allhttp://www.nytimes.com/2013/01/17/health/disgusting-maybe-but-treatment-works-study-finds.html?_r=0pagewanted=all

There are various ways that the transplant can be done, including an
old Chinese method.  All I'm saying is that at lunch, avoid the yellow
soup and the chocolate milk.

The research article was published in the New England Journal of Medicine
and the publisher has made access to the article free; see:
http://www.nejm.org/doi/pdf/**10.1056/NEJMoa1205037http://www.nejm.org/doi/pdf/10.1056/NEJMoa1205037

As with most medical procedures, don't try this at home unless you're
under medical supervision.

-Mike Palij
New York University
m...@nyu.edu

P.S. For some reason this reminds me of the British movie Layer Cake
in which Daniel Craig starred before he became the new James Bond.
There's a scene between Craig and Michael Gambon (who played
Dumbledore in the Harry Potter movies) where Gambon explain the
facts of life to Craig (well, the facts of life as a senior gangster see
them
and tries to impress them into a younger gangster).  Recent Ph.D.s 
desiring

an academic career might benefit from viewing this scene (the movie
is actually quite good for a British crime/drug deal gone wrong genre
piece). 



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RE: [tips] Would You Take S#!t From Anybody?

2013-01-17 Thread Peterson, Douglas (USD)
I'm bothered by this thread but not for the reasons expressed by Beth or Mike 
but by the fact that TIPS appears to have no stomach (yes, I said that on 
purpose) for discussing issues related to psychology and science.  I was not 
offended by Mike's post (I thought the yellow soup/chocolate milk line was over 
the top) but it didn't stop me from reading the NY Times link (and eventually 
the the journal article).  I'm troubled that the supposed offense and the 
supposed apology have distracted the group from discussing the types of things 
I came to expect TIPS to discuss.  

Here are the types of responses I had hoped to read in response to this post.

1) I think the use of three groups was a good example of multiple control 
groups to ensure that improvement was not from the preparation process 
(flushing/rinsing the intestine prior to treatment).  I might just use it in 
research methods class.  It also presents an interesting point to open 
discussion on the ethics since the researches discontinued the study because 
the of the ethical concern that the control group was potentially being harmed.

2) Isn't it interesting how our concept of feces as dirty inhibits, and in fact 
triggers a disgust response, to the point where people might resist a treatment 
with now published efficacy results.  Is feces really all that different from 
blood simply because of cultural associations?   Will the pharmaceutical 
industry develop a name that hides what it is in the medicine and at that 
point will people be lining up for treatment.

3) Wow, 14,000 people per year die from gastrointestinal bacteria!

4) I started thinking about my old dog, who on occasion ate other dog's poop.  
I use to think he was a stupid dog, but now I wonder if he wasn't just settling 
his gut, because as I think about it it most offen occurred after a bout of 
throwing up and the sickness ended.  Smart dog after all.

A long time reader (and seldom a contributor) who wants the TIPS of old where 
we can discuss issues and make jokes at the same time.

Doug

Doug Peterson, PhD
Associate Professor of Psychology
The University of South Dakota
Vermillion SD 57069
605.677.5295

From: Mike Palij [m...@nyu.edu]
Sent: Thursday, January 17, 2013 11:17 AM
To: Teaching in the Psychological Sciences (TIPS)
Cc: Michael Palij
Subject: Re: [tips] Would You Take S#!t From Anybody?

Dear Beth,

*Mea Culpa mode on*
I want to say to Beth and anyone else that I may have offended
with my post on Taking S#!t from others, I am sincerely sorry
that I have offended you and will endeavor in the future to more
tightly monitor my behavior/writing and edit out anything that
anyone could possibly find offensive.  I hope that you can
find it within yourselves to accept my apologies.
I would just like to note that the main point of the post was that
Taking S#!t from others appears to be a good thing though
some people might find Taking S#!t offensive and/or juvenile.
In which case, don't take any s#!t from anyone.
*Mea Culpa mode off*

So, I think I will go away now, pick up a copy of one of Albert Ellis'
books and try to find out why I am responsible for other people's
feeling and how to deal with folks who need a humor implant.

-Mike Palij
New York University
m...@nyu.edu

P.S.  To Prof. Sylvester:  life is unfair, and then you live in
Daytona Beach.


-- Original Message -
On Thu, 17 Jan 2013 07:12:48 -0800, Beth Benoit wrote:

Mike,
I know it's pretty hard to resist the temptation to make scatological jokes
about this, but believe me, people with severe Crohn's and ulcerative
colitis who are undergoing this treatment get very tired of it. Also, you
misread the cause of the illness:  it's not always a result of taking
antibiotics but from *Clostridium difficile* infections that aren't cured
by antibiotics. If you are terribly sick all the time, wasting away,
occasionally having accidents in public and feel you'd rather die than
continue to live like that, you'll try anything rather than endure a
helpless and hopeless chronic inflammatory disease.  As disgusting as it
may sound to the uninitiated, it's beginning to get a decent track record,
as the article stated.
Proctologists and gastroenterologists endure a lifetime of childish jokes
like this, but point out that the gut is a fascinating thing to study and
marvel at it.

I suggest that on a professional website like ours, we don't need to make
juvenile jokes about this, and might consider empathy for people who will
potentially profit from this treatment.

Beth Benoit
Granite State College
Plymouth State University
New Hampshire

On Thu, Jan 17, 2013 at 8:43 AM, Mike Palij m...@nyu.edu wrote:

 Some new medical research shows that for people with gastrointestinal
 illness arising from the use of antibiotics appear to do much better after
 a
 fecal transplant.

 I kid you not.

 The NY Times has an article that provides a popular media account of
 

Re: [tips] Would You Take S#!t From Anybody?

2013-01-17 Thread Carol DeVolder
This actually came at a good time. I am introducing my Brain and Behavior
students to the concept of critical thinking. I was able to mention this
article because, although it sounds repulsive, as Beth notes, many people
are desperate for a cure--especially c. diff sufferers (a number that will
likely grow), and may in fact hold promise. I was able to contrast this
with why the Willowbrook study was unethical along with suggestions that we
look at what we find online (e.g., peroxide drips or urine therapy) with a
very critical--but unbiased eye. Without passing any sort of judgment on an
article that I have not fully read, it provided a great example for
critical thinking.
Carol




On Thu, Jan 17, 2013 at 11:17 AM, Mike Palij m...@nyu.edu wrote:

 Dear Beth,

 *Mea Culpa mode on*
 I want to say to Beth and anyone else that I may have offended
 with my post on Taking S#!t from others, I am sincerely sorry
 that I have offended you and will endeavor in the future to more
 tightly monitor my behavior/writing and edit out anything that
 anyone could possibly find offensive.  I hope that you can
 find it within yourselves to accept my apologies.
 I would just like to note that the main point of the post was that
 Taking S#!t from others appears to be a good thing though
 some people might find Taking S#!t offensive and/or juvenile.
 In which case, don't take any s#!t from anyone.
 *Mea Culpa mode off*

 So, I think I will go away now, pick up a copy of one of Albert Ellis'
 books and try to find out why I am responsible for other people's
 feeling and how to deal with folks who need a humor implant.

 -Mike Palij
 New York University
 m...@nyu.edu

 P.S.  To Prof. Sylvester:  life is unfair, and then you live in
 Daytona Beach.


 -- Original Message - On Thu, 17 Jan 2013 07:12:48
 -0800, Beth Benoit wrote:

 Mike,
 I know it's pretty hard to resist the temptation to make scatological jokes
 about this, but believe me, people with severe Crohn's and ulcerative
 colitis who are undergoing this treatment get very tired of it. Also, you
 misread the cause of the illness:  it's not always a result of taking
 antibiotics but from *Clostridium difficile* infections that aren't cured
 by antibiotics. If you are terribly sick all the time, wasting away,
 occasionally having accidents in public and feel you'd rather die than
 continue to live like that, you'll try anything rather than endure a
 helpless and hopeless chronic inflammatory disease.  As disgusting as it
 may sound to the uninitiated, it's beginning to get a decent track record,
 as the article stated.
 Proctologists and gastroenterologists endure a lifetime of childish jokes
 like this, but point out that the gut is a fascinating thing to study and
 marvel at it.

 I suggest that on a professional website like ours, we don't need to make
 juvenile jokes about this, and might consider empathy for people who will
 potentially profit from this treatment.

 Beth Benoit
 Granite State College
 Plymouth State University
 New Hampshire

 On Thu, Jan 17, 2013 at 8:43 AM, Mike Palij m...@nyu.edu wrote:

  Some new medical research shows that for people with gastrointestinal
 illness arising from the use of antibiotics appear to do much better after
 a
 fecal transplant.

 I kid you not.

 The NY Times has an article that provides a popular media account of
 the research and can be accessed here:
 http://www.nytimes.com/2013/01/17/health/disgusting-maybe-http://www.nytimes.com/2013/**01/17/health/disgusting-maybe-**
 but-treatment-works-study-finds.html?_r=0pagewanted=**all
 http://www.nytimes.com/**2013/01/17/health/disgusting-**
 maybe-but-treatment-works-**study-finds.html?_r=0**pagewanted=allhttp://www.nytimes.com/2013/01/17/health/disgusting-maybe-but-treatment-works-study-finds.html?_r=0pagewanted=all
 

 There are various ways that the transplant can be done, including an
 old Chinese method.  All I'm saying is that at lunch, avoid the yellow
 soup and the chocolate milk.

 The research article was published in the New England Journal of Medicine
 and the publisher has made access to the article free; see:
 http://www.nejm.org/doi/pdf/10.1056/NEJMoa1205037http://www.nejm.org/doi/pdf/**10.1056/NEJMoa1205037
 http://**www.nejm.org/doi/pdf/10.1056/**NEJMoa1205037http://www.nejm.org/doi/pdf/10.1056/NEJMoa1205037
 

 As with most medical procedures, don't try this at home unless you're
 under medical supervision.

 -Mike Palij
 New York University
 m...@nyu.edu

 P.S. For some reason this reminds me of the British movie Layer Cake
 in which Daniel Craig starred before he became the new James Bond.
 There's a scene between Craig and Michael Gambon (who played
 Dumbledore in the Harry Potter movies) where Gambon explain the
 facts of life to Craig (well, the facts of life as a senior gangster see
 them
 and tries to impress them into a younger gangster).  Recent Ph.D.s
 desiring
 an academic career might benefit from viewing this 

[tips] Coprophagia

2013-01-17 Thread Wuensch, Karl L
In a similar vein, and decades ago, coprophagia (especially in pups) 
was explained in terms of the benefits associated with inoculation of the GI 
tract with beneficial bacteria.

Karl W. 
-Original Message-
From: Mike Palij [mailto:m...@nyu.edu] 
Sent: Thursday, January 17, 2013 8:44 AM
To: Teaching in the Psychological Sciences (TIPS)
Cc: Michael Palij
Subject: [tips] Would You Take S#!t From Anybody?

Some new medical research shows that for people with gastrointestinal illness 
arising from the use of antibiotics appear to do much better after a fecal 
transplant.

I kid you not.

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RE: Re:[tips] my crummy knowledge of stats

2013-01-17 Thread Wuensch, Karl L
My understanding of the intent of the analysis was to find items which 
were most affected, not a test for an omnibus effect across items.
 - Original Message -

 From: Annette Taylortay...@sandiego.edu
 To: Teaching in the Psychological Sciences 
 (TIPS)tips@fsulist.frostburg.edu
 Sent: Tuesday, January 15, 2013 6:21:42 PM
 Subject: [tips] my crummy knowledge of stats

 I know this is a basic question but here goes:

 I have categorical data, 0,1 which stands for incorrect (0) or correct (1) on 
 a test item.

 I have 25 items and I have a pretest and a posttest and I want to know on 
 which items students improved significantly, and not just by chance. Just 
 eyeballing the data I can tell that there are some on which the improved 
 quite a bit, some not at all and some are someplace in the middle and I can't 
 make a guess at all. That is why we have statistics. Yeah!  
 hbleh.

 As far as I know, the best thing to do is a chi-square test for each of 25 
 items; but of course that will mean that with a .05 sig level I will have at 
 least one false positive, maybe more, but most assuredly at least one. This 
 seems to be a risk. At any rate I can use SPSS and the crosstabs command 
 allow for calculation of the chi-square.

 I know that when I do planned comparisons with multiple t-tests, I can do a 
 Simes' correction in which I can rank order my final, obtained alphas, and 
 adjust for the number of comparisons and reject from the point from which the 
 obtained alpha failed to exceed the corrected-for-number-of-comps alpha. But 
 as far as I know, I cannot do that with 25 chi square tests. There is 
 probably some reason why I can no more do that, that relates to the reason 
 for why I cannot do 25 t-tests in this situation with categorical data.

 Is there a better way to answer my research question? I need a major 
 professor! Oh wait, that's me... drat! I need to hire a statistician. Oh 
 wait, I'd need $$ for that and I don't have any. So I hope tipsters can stand 
 in as a quasi-hired-statistician and help me out.

 Oh, I get the digest. I don't mind waiting until tomorrow or the next 
 day for a response, but a backchannel is fine.tay...@sandiego.edu

 I will be at APS this year. Any other tipsters planning to be there? Let's 
 have a party! I'd love to put personalities to names.

 Thanks

 Annette

 Annette Kujawski Taylor, Ph. D.
 Professor, Psychological Sciences
 University of San Diego
 5998 Alcala Park
 San Diego, CA 92110
 tay...@sandiego.edu


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RE: [tips] Would You Take S#!t From Anybody?

2013-01-17 Thread Mike Palij

I just want to make a simple point:  If one had read the NY Times
article, then my comment about yellow soup and chocolate milk
might have seen less over the top because:

(1)  Quoting the NYT article:

|Fecal therapy has often been used to cure gut trouble in cows
|and horses. Books on traditional Chinese medicine mention
|giving it to people by mouth to cure diarrhea in the fourth century;
|one book called it yellow soup.

I'm not sure why someone would see this as over the top given
the context of the article instead of as a warning to people who
use traditional Chinese medicine and alternative and complimentary
medicine -- make sure you know what you're ingesting and agree
to it.  Consider what is one of the main components of the Chinese
delicacy Bird's nest soup.  For the curious, see:
http://www.livescience.com/21534-edible-birds-nests-health.html

(2)  Quoting the NYT article:

|The researchers studied adults who had been suffering from
|C. difficile for months and had had at least one relapse after
|antibiotics. They were picked at random to be in one of three
|groups. Only one group, 16 people, had the transplant: they
|took the antibiotic vancomycin for four days, had their intestines
|rinsed and then had the fecal solution pumped into their small
|intestines through a nose tube. A second group, 13 people,
|had the intestinal wash and 14 days of vancomycin; a third group,
|also 13 people, had only vancomycin.
|
|The donors were tested for an array of diseases to make sure
|they did not infect the patients. Their specimens were mixed
|with saline in a blender and strained, to produce a solution that
|Dr. Keller said resembled chocolate milk.

In other words, the treatment was via a nose tube and if the tube
was clear, the material would have looked like chocolate milk.

After reading the above passages, I think a person could have
two reactions:

(a)  they associate disgust with yellow soup and chocolate milk
or
(b) they have less disgust associated with the notion of a fecal transplant,
especially if one likes chocolate milk (i.e., the positive aspect of one's
representation of chocolate milk dominates the negative aspects of
ingesting feces).

So, would one not view yellow soup and chocolate milk differently
after reading those passages?

-Mike Palij
New York University
m...@nyu.edu



-   Original Message   ---
On Thu, 17 Jan 2013 09:56:19 -0800, Douglas Peterson wrote:
I'm bothered by this thread but not for the reasons expressed by Beth or 
Mike

but by the fact that TIPS appears to have no stomach (yes, I said that on
purpose) for discussing issues related to psychology and science.  I was not
offended by Mike's post (I thought the yellow soup/chocolate milk line was 
over
the top) but it didn't stop me from reading the NY Times link (and 
eventually

the the journal article).  I'm troubled that the supposed offense and the
supposed apology have distracted the group from discussing the types of 
things

I came to expect TIPS to discuss.
Here are the types of responses I had hoped to read in response to this 
post.


1) I think the use of three groups was a good example of multiple control
groups to ensure that improvement was not from the preparation process
(flushing/rinsing the intestine prior to treatment).  I might just use it in
research methods class.  It also presents an interesting point to open
discussion on the ethics since the researches discontinued the study because
the of the ethical concern that the control group was potentially being 
harmed.


2) Isn't it interesting how our concept of feces as dirty inhibits, and in 
fact
triggers a disgust response, to the point where people might resist a 
treatment
with now published efficacy results.  Is feces really all that different 
from

blood simply because of cultural associations?   Will the pharmaceutical
industry develop a name that hides what it is in the medicine and at that
point will people be lining up for treatment.

3) Wow, 14,000 people per year die from gastrointestinal bacteria!

4) I started thinking about my old dog, who on occasion ate other dog's 
poop.
I use to think he was a stupid dog, but now I wonder if he wasn't just 
settling

his gut, because as I think about it it most offen occurred after a bout of
throwing up and the sickness ended.  Smart dog after all.

A long time reader (and seldom a contributor) who wants the TIPS of old 
where
we can discuss issues and make jokes at the same time. 



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Re: [tips] my crummy knowledge of stats

2013-01-17 Thread John Kulig
That was my understanding too ... though while washing dishes last night I 
warmed up to Jim's (was it Jim Clark?? Sorry if I forgot!) suggestion 
(imperfect memory here) of treating item as a random factor, get a CI, and then 
noting which improvements lies outside the CI. Also, a very simple thing, 
purely exploratory and descriptive, is just to note how much improvement for 
each item, corrected for pretest differences, such as (Posttest % correct - 
Pretest % correct)/(100% - Pretest % correct). Another is to get an effect 
size, such as phi coefficient, for each chi square from McNemar's test. 

Cronbach's alpha is great for indicating internal homogeneity on a bunch of 
items presumed to measure the same thing (which is not the case here) but it 
won't help identify which items are changing more than others which is what is 
needed I believe. 


== 
John W. Kulig, Ph.D. 
Professor of Psychology 
Coordinator, University Honors 
Plymouth State University 
Plymouth NH 03264 
== 

- Original Message -

From: Karl L Wuensch wuens...@ecu.edu 
To: Teaching in the Psychological Sciences (TIPS) 
tips@fsulist.frostburg.edu 
Sent: Thursday, January 17, 2013 1:28:53 PM 
Subject: RE: Re:[tips] my crummy knowledge of stats 

My understanding of the intent of the analysis was to find items which were 
most affected, not a test for an omnibus effect across items. 
 - Original Message - 
 
 From: Annette Taylortay...@sandiego.edu 
 To: Teaching in the Psychological Sciences 
 (TIPS)tips@fsulist.frostburg.edu 
 Sent: Tuesday, January 15, 2013 6:21:42 PM 
 Subject: [tips] my crummy knowledge of stats 
 
 I know this is a basic question but here goes: 
 
 I have categorical data, 0,1 which stands for incorrect (0) or correct (1) on 
 a test item. 
 
 I have 25 items and I have a pretest and a posttest and I want to know on 
 which items students improved significantly, and not just by chance. Just 
 eyeballing the data I can tell that there are some on which the improved 
 quite a bit, some not at all and some are someplace in the middle and I can't 
 make a guess at all. That is why we have statistics. Yeah!  
 hbleh. 
 
 As far as I know, the best thing to do is a chi-square test for each of 25 
 items; but of course that will mean that with a .05 sig level I will have at 
 least one false positive, maybe more, but most assuredly at least one. This 
 seems to be a risk. At any rate I can use SPSS and the crosstabs command 
 allow for calculation of the chi-square. 
 
 I know that when I do planned comparisons with multiple t-tests, I can do a 
 Simes' correction in which I can rank order my final, obtained alphas, and 
 adjust for the number of comparisons and reject from the point from which the 
 obtained alpha failed to exceed the corrected-for-number-of-comps alpha. But 
 as far as I know, I cannot do that with 25 chi square tests. There is 
 probably some reason why I can no more do that, that relates to the reason 
 for why I cannot do 25 t-tests in this situation with categorical data. 
 
 Is there a better way to answer my research question? I need a major 
 professor! Oh wait, that's me... drat! I need to hire a statistician. Oh 
 wait, I'd need $$ for that and I don't have any. So I hope tipsters can stand 
 in as a quasi-hired-statistician and help me out. 
 
 Oh, I get the digest. I don't mind waiting until tomorrow or the next 
 day for a response, but a backchannel is fine.tay...@sandiego.edu 
 
 I will be at APS this year. Any other tipsters planning to be there? Let's 
 have a party! I'd love to put personalities to names. 
 
 Thanks 
 
 Annette 
 
 Annette Kujawski Taylor, Ph. D. 
 Professor, Psychological Sciences 
 University of San Diego 
 5998 Alcala Park 
 San Diego, CA 92110 
 tay...@sandiego.edu 


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