Re: [Unicon-group] Windows Unicon 13.0 - R5080 benchmark suite

2017-04-18 Thread Jay Hammond
Thoughts on what tools to set up the tests.  Run-benchmark gives 
Run-time error 112 in regex-dna.


Clint wrote umake and sh for a particular job. they seem to be OK but 
will need maintaining.

The existing windows based tools seem to vary in their effect and quality.

The bash under Ubuntu is Linux,  predictable and well maintained.   
Windows 10 users can invoke ubuntu bash (actually I can't right this 
moment; has bash-under-Ubuntu on Windows been withdrawn?).

Perhaps a bash script could (with the assistance of make and other tools 
accessible from bash)  create a batch script sensitive to local 
variables like tmp and temp. It might be able to run the make process 
under Ubuntu, and only return to Windows when the customisation was 
over. Obviously Windows (driven by a batch script or power-shell etc) 
would need to invoke the Unicon processes, (translate, link etc)  
because we don't want to cross-compile Unicon. And because we want the 
Windows timings, we need Windows to run the windows executables.

And I bet there are some areas where MS has had to adapt bash; What does 
pwd  say?  Permissions don't translate well as you noted.  Also bash 
will never be hosted on Windows earlier than 10. If you want to see 
benchmarks for Windows 7,8,8.1 then  Ubuntu bash is not the solution.

Putting some script-writing in the cloud would solve that problem, but 
the complexity and maintenance issues would be greater than umake and sh 
I fear.


Oh yes, I tried run-benchmark  It gave an Icon run-time error.  On regex-dna

I redirected the normal output. I have  kept it.

Run-time error 112
File regex-dna.icn; Line 253
invalid type to size operation
offending value: &null
Traceback:
main(list_1 = [])
getavgtimes(procedure run_regexdna_sequential,"700-thou.dat") from 
line 172 in run-benchmark.icn
run_regexdna_sequential(list_5068880 = ["700-thou.dat"]) from line 
129 in auxiliary.icn
{*&null} from line 253 in regex-dna.icn

just in case,

C:\Users\Jay\Documents\tmp\tests\bench>dir 700*
...
17/04/2017  22:40 7,233,416 700-thou.dat
1 File(s)  7,233,416 bytes
...

jay








On 18/04/2017 22:22, Jafar Al-Gharaibeh wrote:
> The moral of the story is that if we want to be able to run the 
> benchmarks  and/or the standard test suite on Windows then we have to 
> come up with a way around Windows limitations/restrictions. The 
> benchmark and the tests are independent of other parts of the language 
> so we can easily ship them separately allowing the user to place them 
> in a writable  location to start with and run them there.
>
>


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Re: [Unicon-group] Windows Unicon 13.0 - R5080 benchmark suite

2017-04-18 Thread Jafar Al-Gharaibeh
On Tue, Apr 18, 2017 at 5:04 PM, Jay Hammond  wrote:

> Thanks Jafar,  for giving me the impetus to be impatient with regex-dna .
>
> I think regex-dna was not hanging in the classic sense but waiting on
> input as it reported as soon as I pressed  in the command window.
>

Good catch! in my quick test I quickly gave up and left it alone. What is
happening is that we failed earlier in generating some of the data files.
Regex-dna is fed one of these empty files which causes it block waiting for
input. I looked at the makefile and generate.icn and I can some issues
there running on Windows with who is creating "generate"  and what name it
is given and how it is invoked. In summary: data file generation doesn't
work quite right and needs to be fixed. The good news is that this is  just
a mysterious hang that I have to spend a week chasing down :-).

That definitely progressed things Jay, very much appreciated!

Cheers,
Jafar
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Re: [Unicon-group] Windows Unicon 13.0 - R5080 benchmark suite

2017-04-18 Thread Jay Hammond
Thanks Jafar,  for giving me the impetus to be impatient with regex-dna .

I think regex-dna was not hanging in the classic sense but waiting on 
input as it reported as soon as I pressed  in the command window.

here is the concluding screen-scrape

regex-dna 10-thou.dat 
39:51.129  0.172 13901.912x
reverse-complement 150-thou.dat  0.094N/A
spectral-norm 1000.484N/A
thread-ring 1000   N/A  0.203

--

What have I learned so far?

Run the tests in a (separate) directory owned by the current user.

use Clint's umake.exe  and  his  sh.exe .

use fasta to create the mil and thou.dat files.  (or get that bit of the 
make process fixed)

running regex-dna will partly be a test of the users' reaction times, 
until it's fixed not to require input.

I hope that's progressed things.  Let me know if you want more testing done.

and thanks for all the fast support.

Jay









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Re: [Unicon-group] Windows Unicon 13.0 - R5080 benchmark suite

2017-04-18 Thread Jafar Al-Gharaibeh
The moral of the story is that if we want to be able to run the benchmarks
 and/or the standard test suite on Windows then we have to come up with a
way around Windows limitations/restrictions. The benchmark and the tests
are independent of other parts of the language so we can easily ship them
separately allowing the user to place them in a writable  location to start
with and run them there.

Jay, you have made very good progress! I did run the benchmark on a new
Windows machine and I got to the same point at regex-dna. I think there is
a problem there. It looks like the program hangs so waiting will not help.
I will look into this issue, but it is going to take me some time to do
that.  For now, if  you want to continue just edit run-benchmark and take
out regex-dna.

Thank you very much for the feedback.
Jafar

On Tue, Apr 18, 2017 at 3:55 PM, Jay Hammond  wrote:

> Hi Clint,
>
> I'm sure your guess is not wild.
>
>
> Yesterday I tried creating c:\Users\jay\Documents\tmp\bench and running
> the tests there.
>
> I stumbled differently, and did not document it.
>
>
> So I''ll try again.
>
> As for the sh &  make issues;  I don't know enough about the GNU
> versions.  Looking at the help to sh, it seems too much like a DOS shell
> to be what you are expecting. So I will continue testing with umake and
> sh from the distribution. That way someone else may be able to run the
> tests too.   Please don't try to reproduce my problems yet.  I have had
> parts of the tests run and report, so I know I am close.
>
>
> I'll start with a clean tests directory, in my (writable) space,
>
>
> I'll run umake in
>
> C:\Users\Jay\Documents\tmp\tests\bench
>
> twice.
>
> first time:
>
> generating input files.'generate.out' is not recognized as an
> internal or external command,
> operable program or batch file.
> .'generate.out' is not recognized as an internal or external command,
> operable program or batch file. (repeated)
>
> done!
>
>
> 2nd time
>
> C:\Users\Jay\Documents\tmp\tests\bench>umake
> generating input files.done!
>
>
> the mil and thou .dat files are still empty.
>
>
> # add in the populated  .dat files if necessary & retry.
>
> I ran fasta on the 17th. I've copied the mil and thou .dat files that I
> populated then.
>
> C:\Users\Jay\Documents\tmp\tests\bench>run-test
>
> Word Size  Main Memory  C Compiler  clockOS
> 64 bit 7.931 GB MinGW gcc 5 2.6 GHz  MS Windows
>
> CPU
> 4x Intel(R) Core(TM) i5-4288U CPU @ 2.60GHz
>
>  Elapsed time h:m:s |Concurrent |
> benchmark   |Sequential|   |Concurrent|
> |Performance|
> concord concord.test 0.012N/A
> deal 500 0.032N/A
> ipxref ipxref.test   0.016N/A
> queens 9 0.031N/A
> rsg rsg.test 0.063N/A
> binary-trees 10  0.156 0.750 0.208x
> chameneos-redux 600N/A  0.062
> fannkuch 7   0.032N/A
> fasta 1000   0.015N/A
> k-nucleotide 25-thou.dat 1.066N/A
> mandelbrot 200   1.094 0.672 1.627x
> meteor-contest 1 1.843N/A
> n-body 1000  0.063N/A
> pidigits 500 0.015N/A
> regex-dna 10-thou.dat
>
> 21:50 BST.
> This takes time, at least 20 mins, maybe an hour.
> another post later.
>
>
>
>
>
> 
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Re: [Unicon-group] Windows Unicon 13.0 - R5080 benchmark suite

2017-04-18 Thread Jay Hammond
Hi Clint,

I'm sure your guess is not wild.


Yesterday I tried creating c:\Users\jay\Documents\tmp\bench and running 
the tests there.

I stumbled differently, and did not document it.


So I''ll try again.

As for the sh &  make issues;  I don't know enough about the GNU 
versions.  Looking at the help to sh, it seems too much like a DOS shell 
to be what you are expecting. So I will continue testing with umake and 
sh from the distribution. That way someone else may be able to run the 
tests too.   Please don't try to reproduce my problems yet.  I have had 
parts of the tests run and report, so I know I am close.


I'll start with a clean tests directory, in my (writable) space,


I'll run umake in

C:\Users\Jay\Documents\tmp\tests\bench

twice.

first time:

generating input files.'generate.out' is not recognized as an 
internal or external command,
operable program or batch file.
.'generate.out' is not recognized as an internal or external command,
operable program or batch file. (repeated)

done!


2nd time

C:\Users\Jay\Documents\tmp\tests\bench>umake
generating input files.done!


the mil and thou .dat files are still empty.


# add in the populated  .dat files if necessary & retry.

I ran fasta on the 17th. I've copied the mil and thou .dat files that I 
populated then.

C:\Users\Jay\Documents\tmp\tests\bench>run-test

Word Size  Main Memory  C Compiler  clockOS
64 bit 7.931 GB MinGW gcc 5 2.6 GHz  MS Windows

CPU
4x Intel(R) Core(TM) i5-4288U CPU @ 2.60GHz

 Elapsed time h:m:s |Concurrent |
benchmark   |Sequential|   |Concurrent| 
|Performance|
concord concord.test 0.012N/A
deal 500 0.032N/A
ipxref ipxref.test   0.016N/A
queens 9 0.031N/A
rsg rsg.test 0.063N/A
binary-trees 10  0.156 0.750 0.208x
chameneos-redux 600N/A  0.062
fannkuch 7   0.032N/A
fasta 1000   0.015N/A
k-nucleotide 25-thou.dat 1.066N/A
mandelbrot 200   1.094 0.672 1.627x
meteor-contest 1 1.843N/A
n-body 1000  0.063N/A
pidigits 500 0.015N/A
regex-dna 10-thou.dat

21:50 BST.
This takes time, at least 20 mins, maybe an hour.
another post later.





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Re: [Unicon-group] Windows Unicon 13.0 - R5080 benchmark suite

2017-04-18 Thread Jeffery, Clint (jeffe...@uidaho.edu)
Jay,


I am gonna take a wild guess here and say: Windows does not like it very much 
when we try and write data files in directories that were created as part of a 
Windows application install. Besides what you've perceived as a permissions 
issue, I've seen really weird behavior trying to modify such directories, like 
the open/write commands succeed, but the output didn't happen, or happened in 
some weird shadow directory and not in the actual directory where it was 
expected. Between that, and interesting differences between your GNU\Unx make 
and bash, and any deficiencies that end up being in my umake and ush, we are 
not in business on benchmarks built from Windows binaries, are we. Sorry.


I think we can track this down fairly swiftly. I would start by copying (cp -r? 
 xcopy /S?) the tests\bench directory to someplace that you can write on, like 
\users\Jay\bench or whatever. From such a writable directory, we can then start 
sorting the "make" issues, if they do not magically vanish due to escaping from 
"Windows shadow directory hell".


Sorting the make issues may be tougher for me since I most likely do not use 
whatever you use for your GNU\Unx make and bash. Portability of said tools has 
been a continual joy as we move from Windows version to Windows version, and 
emulation subsystem to emulation subsystem.  I have eschewed Cygwin and leave 
that to others to support. I have used MSYS before and am pretty OK with it. I 
have had make.exe or sh.exe that worked for years suddenly fail when a new 
Windows came out, so I have written umake.icn and ush.icn and am willing to 
support them, but they aren't real UNIX and that will always be problematic for 
some folks.


I will download Jafar's new binaries and see if I can reproduce your problems 
and/or construct a recipe for you.


Cheers,

Clint


From: Jay Hammond 
Sent: Tuesday, April 18, 2017 10:32:19 AM
To: unicon-group@lists.sourceforge.net
Subject: Re: [Unicon-group] Windows Unicon 13.0 - R5080 benchmark suite

I don't know make. I need a recipe. So I am floundering around. First
the setup, then what I tried.

Fresh install of Unicon 13.0 R5080 as administrator into C:\Unicon
on a windows 10 HP laptop
OS NameMicrosoft Windows 10 Home
Version10.0.14393 Build 14393
ProcessorIntel(R) Core(TM) i5-4288U CPU @ 2.60GHz, 2601 Mhz, 2
Core(s), 4 Logical Processor(s)
System type x64-based PC,  8GB Ram,

All the commands below were run in a command window "run as
administrator"  (think  sudo bash )  because I had permissions problems
earlier.

"which" reports that make.exe and sh.exe are found in
C:\Program Files(x86)\GNU\Unx

the readme in C:\Unicon\tests\bench\icon says that I can prepare for
benchmarking with
  make benchmark
cd C:\Unicon\tests\bench\icon
make benchmark
gives
make benchmark-icont
...
translating rsg
make[2]: *** [compile-icont] Error 1
make[2]:Leaving directory `C:/Unicon/tests/bench/icon'
make[2]: *** [benchmark-icont] Error 2
make[2]:Leaving directory `C:/Unicon/tests/bench/icon'
make: *** [benchmark] Error 2

back at prompt
it made some bat files, and some .u files.

umake benchmark
gave
umake: -1 exit by "\t benchmark-icont"

no better if I repeat it.

--
back to a clean version of C:\unicon\tests

run make on c:\Unicon\tests\bench
make

makefile:198: target `Clean' given more than once in the same rule.
unicon -s -c pool.icn
process_begin: CreateProcess((null), unicon -s -c pool.icn, ...) failed.
make (e=2): The system cannot find the file specified.
make: *** [pool.u] Error 2
dir pool*.* shows pool.icn in C:\Unicon\tests\bench .

back to a clean version of C:\unicon\tests

umake test
the last error is
{&null . clone} from line 129 in umake.icn

('test' has no referent it seems)

oH WELL.
cd C:\Unicon\tests\bench

umake

generating input files.'generate.out is not recognised as an
internal or external command,
operable program or batch file.

"'generate.out' is not recognised as an internal or external command,
operable program or batch file."  appears 9 times

dir *.dat shows 9 empty .dat files with [integer] || "-" || ("mil" or
"thou") || ".dat" names e.g.25-mil.dat
ipxref.dat has today's date & time size 1.6MB  2 other dat files are
dated 2016 (so must have been precomputed)

running umake again gives no errors, but the mil and thou data files are
empty as before

running a compiled fasta.icn  will create the mil and thou  data files.
I did that a few days ago.
I'll reinstate them and carry on in a later session.

---
jay


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Re: [Unicon-group] Windows Unicon 13.0 - R5080 benchmark suite

2017-04-18 Thread Jay Hammond
I don't know make. I need a recipe. So I am floundering around. First 
the setup, then what I tried.

Fresh install of Unicon 13.0 R5080 as administrator into C:\Unicon
on a windows 10 HP laptop
OS NameMicrosoft Windows 10 Home
Version10.0.14393 Build 14393
ProcessorIntel(R) Core(TM) i5-4288U CPU @ 2.60GHz, 2601 Mhz, 2 
Core(s), 4 Logical Processor(s)
System type x64-based PC,  8GB Ram,

All the commands below were run in a command window "run as 
administrator"  (think  sudo bash )  because I had permissions problems 
earlier.

"which" reports that make.exe and sh.exe are found in
C:\Program Files(x86)\GNU\Unx

the readme in C:\Unicon\tests\bench\icon says that I can prepare for 
benchmarking with
  make benchmark
cd C:\Unicon\tests\bench\icon
make benchmark
gives
make benchmark-icont
...
translating rsg
make[2]: *** [compile-icont] Error 1
make[2]:Leaving directory `C:/Unicon/tests/bench/icon'
make[2]: *** [benchmark-icont] Error 2
make[2]:Leaving directory `C:/Unicon/tests/bench/icon'
make: *** [benchmark] Error 2

back at prompt
it made some bat files, and some .u files.

umake benchmark
gave
umake: -1 exit by "\t benchmark-icont"

no better if I repeat it.

--
back to a clean version of C:\unicon\tests

run make on c:\Unicon\tests\bench
make

makefile:198: target `Clean' given more than once in the same rule.
unicon -s -c pool.icn
process_begin: CreateProcess((null), unicon -s -c pool.icn, ...) failed.
make (e=2): The system cannot find the file specified.
make: *** [pool.u] Error 2
dir pool*.* shows pool.icn in C:\Unicon\tests\bench .

back to a clean version of C:\unicon\tests

umake test
the last error is
{&null . clone} from line 129 in umake.icn

('test' has no referent it seems)

oH WELL.
cd C:\Unicon\tests\bench

umake

generating input files.'generate.out is not recognised as an 
internal or external command,
operable program or batch file.

"'generate.out' is not recognised as an internal or external command,
operable program or batch file."  appears 9 times

dir *.dat shows 9 empty .dat files with [integer] || "-" || ("mil" or 
"thou") || ".dat" names e.g.25-mil.dat
ipxref.dat has today's date & time size 1.6MB  2 other dat files are 
dated 2016 (so must have been precomputed)

running umake again gives no errors, but the mil and thou data files are 
empty as before

running a compiled fasta.icn  will create the mil and thou  data files. 
I did that a few days ago.
I'll reinstate them and carry on in a later session.

---
jay


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