Thanks Jafar, for giving me the impetus to be impatient with regex-dna .
I think regex-dna was not hanging in the classic sense but waiting on
input as it reported as soon as I pressed <enter> in the command window.
here is the concluding screen-scrape
regex-dna 10-thou.dat <ENTER>
39:51.129 0.172 13901.912x
reverse-complement 150-thou.dat 0.094 N/A
spectral-norm 100 0.484 N/A
thread-ring 1000 N/A 0.203
--------------------------
What have I learned so far?
Run the tests in a (separate) directory owned by the current user.
use Clint's umake.exe and his sh.exe .
use fasta to create the mil and thou.dat files. (or get that bit of the
make process fixed)
running regex-dna will partly be a test of the users' reaction times,
until it's fixed not to require input.
I hope that's progressed things. Let me know if you want more testing done.
and thanks for all the fast support.
Jay
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