Bug#1055926: rodbc: [L10N,DE] rodbc_1.3-21-1_R-de: german translation

2023-11-26 Thread Dirk Eddelbuettel
On 26 November 2023 at 15:09, Christoph Brinkhaus wrote: | Am Tue, Nov 14, 2023 at 02:46:18PM +0100 schrieb Christoph Brinkhaus: | > Am Tue, Nov 14, 2023 at 07:04:23AM -0600 schrieb Dirk Eddelbuettel: | > > | > > On 14 November 2023 at 12:30, Christoph Brinkhaus wrote: | >

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-20 Thread Dirk Eddelbuettel
Hi Graham, On 20 November 2023 at 12:13, Graham Inggs wrote: | On Sun, 19 Nov 2023 at 14:59, Dirk Eddelbuettel wrote: | > So it contains a patch by Mikael which had been applied _permitting Matrix | > 1.6-2_ to get to CRAN. So for this particular pair it was the other way around. | |

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-20 Thread Dirk Eddelbuettel
Hi Graham, On 20 November 2023 at 12:13, Graham Inggs wrote: | On Sun, 19 Nov 2023 at 14:59, Dirk Eddelbuettel wrote: | > So it contains a patch by Mikael which had been applied _permitting Matrix | > 1.6-2_ to get to CRAN. So for this particular pair it was the other way around. | |

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-19 Thread Dirk Eddelbuettel
On 19 November 2023 at 09:59, Dirk Eddelbuettel wrote: | On 19 November 2023 at 13:49, Graham Inggs wrote: | | We don't believe only touching debian/changelog, or a binNMU, is | | sufficient. We were surprised that your r-cran-lme4 upload did not at | | least include: | | Depends: r-cran-matrix

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-19 Thread Dirk Eddelbuettel
On 19 November 2023 at 09:59, Dirk Eddelbuettel wrote: | On 19 November 2023 at 13:49, Graham Inggs wrote: | | We don't believe only touching debian/changelog, or a binNMU, is | | sufficient. We were surprised that your r-cran-lme4 upload did not at | | least include: | | Depends: r-cran-matrix

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-19 Thread Dirk Eddelbuettel
Hi Graham, On 19 November 2023 at 13:49, Graham Inggs wrote: | On Tue, 14 Nov 2023 at 12:42, Dirk Eddelbuettel wrote: | > Doesn't 'normal' do that? | | No, only serious and above are considered RC [1] and also for migration. | | This week, Paul Gevers and I spent some time discussing w

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-19 Thread Dirk Eddelbuettel
Hi Graham, On 19 November 2023 at 13:49, Graham Inggs wrote: | On Tue, 14 Nov 2023 at 12:42, Dirk Eddelbuettel wrote: | > Doesn't 'normal' do that? | | No, only serious and above are considered RC [1] and also for migration. | | This week, Paul Gevers and I spent some time discussing w

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-18 Thread Dirk Eddelbuettel
I will not engage any more with debian-r. But this is now at the BTS so a clarification may be in order. This started as I had sent an email as a heads-up to fellow maintainers (via that mostly pointless list) informing them that their packages would exhibit a bug following a bug in package

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-18 Thread Dirk Eddelbuettel
I will not engage any more with debian-r. But this is now at the BTS so a clarification may be in order. This started as I had sent an email as a heads-up to fellow maintainers (via that mostly pointless list) informing them that their packages would exhibit a bug following a bug in package

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-17 Thread Dirk Eddelbuettel
On 14 November 2023 at 07:42, Dirk Eddelbuettel wrote: | | On 14 November 2023 at 12:26, Graham Inggs wrote: | | Hi Dirk | | | | On Tue, 14 Nov 2023 at 12:01, Dirk Eddelbuettel wrote: | | > Well that seems to be a) the wrong severity and b) the wrong package. | | | | Both are correct. We

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-17 Thread Dirk Eddelbuettel
On 14 November 2023 at 07:42, Dirk Eddelbuettel wrote: | | On 14 November 2023 at 12:26, Graham Inggs wrote: | | Hi Dirk | | | | On Tue, 14 Nov 2023 at 12:01, Dirk Eddelbuettel wrote: | | > Well that seems to be a) the wrong severity and b) the wrong package. | | | | Both are correct. We

Re: Matrix update triggering need for four rebuilds

2023-11-17 Thread Dirk Eddelbuettel
On 17 November 2023 at 23:50, Nilesh Patra wrote: | | | On 17 November 2023 11:34:21 pm IST, Dirk Eddelbuettel wrote: | > | >On 17 November 2023 at 18:43, Andreas Tille wrote: | >| Am Fri, Nov 17, 2023 at 10:12:02AM -0600 schrieb Dirk Eddelbuettel: | >| > Leaving | >| &

Re: Matrix update triggering need for four rebuilds

2023-11-17 Thread Dirk Eddelbuettel
On 17 November 2023 at 18:43, Andreas Tille wrote: | Am Fri, Nov 17, 2023 at 10:12:02AM -0600 schrieb Dirk Eddelbuettel: | > Leaving | > | >r-cran-irlba | >r-cran-openmx | > | > for you (unless you got to it already). | | To make it pretty clear: I will

Re: Matrix update triggering need for four rebuilds

2023-11-17 Thread Dirk Eddelbuettel
On 15 November 2023 at 05:23, Dirk Eddelbuettel wrote: | | On 15 November 2023 at 07:00, Andreas Tille wrote: | | Am Tue, Nov 14, 2023 at 04:49:01PM -0600 schrieb Dirk Eddelbuettel: | | > | | > On 14 November 2023 at 16:17, Dirk Eddelbuettel wrote: | | > | | | > | On 14 November 2

Re: [R-pkg-devel] Can -mmacosx-version-min be raised to 10.15 ?

2023-11-17 Thread Dirk Eddelbuettel
Simon, One more thing: An alert reader pointed out to me that macOS-oldrel has r-oldrel-macos-x86_64 r-oldrelmacOS x86_64 macOS 10.13.6 (17G11023) in the table at https://cran.r-project.org/web/checks/check_flavors.html. So this seems to mesh with what the R-on-macOS FAQ says,

Re: [R-pkg-devel] Can -mmacosx-version-min be raised to 10.15 ?

2023-11-16 Thread Dirk Eddelbuettel
Simon, On 17 November 2023 at 10:43, Simon Urbanek wrote: | > On 17/11/2023, at 10:28 AM, Dirk Eddelbuettel wrote: | > On 17 November 2023 at 09:35, Simon Urbanek wrote: | > | can you clarify where the flags come from? The current CRAN builds (big-sur-x86_64 and big-sur-a

Re: [R-pkg-devel] Can -mmacosx-version-min be raised to 10.15 ?

2023-11-16 Thread Dirk Eddelbuettel
someone may want to refresh this. It is what I consulted as relevant info. Thanks, Dirk | | Cheers, | Simon | | | | > On 17/11/2023, at 2:57 AM, Dirk Eddelbuettel wrote: | > | > | > Hi Simon, | > | > We use C++20 'inside' our library and C++17 in the API. Part of our C++

[R-pkg-devel] Can -mmacosx-version-min be raised to 10.15 ?

2023-11-16 Thread Dirk Eddelbuettel
Hi Simon, We use C++20 'inside' our library and C++17 in the API. Part of our C++17 use is now expanding to std::filesystem whose availability is dependent on the implementation. The compiler tells us (in a compilation using -mmacosx-version-min=10.14) that the features we want are only

Re: [ESS] How can one tell rlang not to mess up R session in ESS ?

2023-11-15 Thread Dirk Eddelbuettel via ESS-help
For completeness, and without any time yet to dig into Lionel's nord modification, and as a friend who saw thread asked: what I ended up doing was following the hint about cli and NO_COLOR and now (conditionally) set ## No color from cli inside emacs ##

Re: Matrix update triggering need for four rebuilds

2023-11-15 Thread Dirk Eddelbuettel
On 15 November 2023 at 07:00, Andreas Tille wrote: | Am Tue, Nov 14, 2023 at 04:49:01PM -0600 schrieb Dirk Eddelbuettel: | > | > On 14 November 2023 at 16:17, Dirk Eddelbuettel wrote: | > | | > | On 14 November 2023 at 11:06, Andreas Tille wrote: | > | | Am Mon, Nov 13, 202

Re: Matrix update triggering need for four rebuilds

2023-11-14 Thread Dirk Eddelbuettel
On 14 November 2023 at 16:17, Dirk Eddelbuettel wrote: | | On 14 November 2023 at 11:06, Andreas Tille wrote: | | Am Mon, Nov 13, 2023 at 07:23:06AM -0600 schrieb Dirk Eddelbuettel: | | > Most of these are not in Debian but I think we need binary rebuilds of | | > | | >

Re: Matrix update triggering need for four rebuilds

2023-11-14 Thread Dirk Eddelbuettel
On 14 November 2023 at 11:06, Andreas Tille wrote: | Am Mon, Nov 13, 2023 at 07:23:06AM -0600 schrieb Dirk Eddelbuettel: | > Most of these are not in Debian but I think we need binary rebuilds of | > | >irlbabecause of headers | >OpenMx becaus

Re: [ESS] How can one tell rlang not to mess up R session in ESS ?

2023-11-14 Thread Dirk Eddelbuettel via ESS-help
On 14 November 2023 at 12:03, Deepayan Sarkar wrote: | Are you suggesting that we should not be getting that by default? I As I wrote in my message starting the thread: Casual searching at the rlang repo doesn't reveal anything so pardon me for asking here but what is a simple way to

Re: [ESS] How can one tell rlang not to mess up R session in ESS ?

2023-11-14 Thread Dirk Eddelbuettel via ESS-help
On 14 November 2023 at 17:22, Lionel Henry wrote: | Worth noting I'm using `xterm-color` instead of `ansi-color` in my | comint buffers. IIRC the latter (which is builtin) didn't support some | features. Not sure if that could explain the bad behaviour you've | observed. I was also thinking cli

Re: [ESS] How can one tell rlang not to mess up R session in ESS ?

2023-11-14 Thread Dirk Eddelbuettel via ESS-help
si-colors-and-styles- if (Sys.getenv("INSIDE_EMACS") != "") Sys.setenv(NO_COLOR="TRUE") See next message. Part of me still thinks rlang and cli do this wrong by ignoring available env vars. Thanks for the help, Dirk | Best, | Lionel | |

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-14 Thread Dirk Eddelbuettel
On 14 November 2023 at 12:26, Graham Inggs wrote: | Hi Dirk | | On Tue, 14 Nov 2023 at 12:01, Dirk Eddelbuettel wrote: | > Well that seems to be a) the wrong severity and b) the wrong package. | | Both are correct. We do not want rmatrix to migrate and break | packages in testing. Does

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-14 Thread Dirk Eddelbuettel
On 14 November 2023 at 12:26, Graham Inggs wrote: | Hi Dirk | | On Tue, 14 Nov 2023 at 12:01, Dirk Eddelbuettel wrote: | > Well that seems to be a) the wrong severity and b) the wrong package. | | Both are correct. We do not want rmatrix to migrate and break | packages in testing. Does

Bug#1055926: rodbc: [L10N,DE] rodbc_1.3-21-1_R-de: german translation

2023-11-14 Thread Dirk Eddelbuettel
On 14 November 2023 at 12:30, Christoph Brinkhaus wrote: | Source: rodbc | Version: 1.3-21-1 | Severity: wishlist | | Dear Maintainer, | | please find attached the po file with the german translation. | It is an update to the current po template. | Please consider to apply it to the package.

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-14 Thread Dirk Eddelbuettel
On 14 November 2023 at 09:15, Graham Inggs wrote: | Source: rmatrix | Version: 1.6-2-1 | Severity: serious | X-Debbugs-Cc: debia...@lists.debian.org | | Hi Dirk | | I'm opening this bug as a place for discussion and to track the | affected packages. It can be closed once rmatrix and its |

Bug#1055922: rmatrix: ABI change in Matrix 1.6-2

2023-11-14 Thread Dirk Eddelbuettel
On 14 November 2023 at 09:15, Graham Inggs wrote: | Source: rmatrix | Version: 1.6-2-1 | Severity: serious | X-Debbugs-Cc: debia...@lists.debian.org | | Hi Dirk | | I'm opening this bug as a place for discussion and to track the | affected packages. It can be closed once rmatrix and its |

Re: [ESS] How can one tell rlang not to mess up R session in ESS ?

2023-11-13 Thread Dirk Eddelbuettel via ESS-help
nord8 ; blue | nord15; magenta | nord7 ; cyan | nord5 ; white | ))) | (setq xterm-color-names ansi-colours) | (custom-theme-set-vari

[ESS] How can one tell rlang not to mess up R session in ESS ?

2023-11-13 Thread Dirk Eddelbuettel via ESS-help
Casual searching at the rlang repo doesn't reveal anything so pardon me for asking here but what is a simple way to tell rlang to NOT do fancy pants color error backtraces? At least under the theme I use ("nord", for Emacs) it basically nixes readability by leaving a 'dark on dark' default.

Re: [R-pkg-devel] Package submission fail

2023-11-13 Thread Dirk Eddelbuettel
On 13 November 2023 at 16:46, Ivan Krylov wrote: | Hello Christiaan and welcome to R-package-devel! Seconded but PLEASE do not send large attachments to the list and all its subscriber. Point us to your code repository, you will like get a kind response from a volunteer or two peeking at it.

Re: [Rd] Segmentation fault early in compilation of revision 85514

2023-11-12 Thread Dirk Eddelbuettel
Avi, Might be toolchain-dependent, might be options-dependent--it built fine here. Easier for you to vary option two so maybe try that? Dirk -- dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org __ R-devel@r-project.org mailing list

Re: [R-sig-Debian] [Rd] [R] Why Rprofile.site is not built with manual installation of R devel in linux?

2023-11-10 Thread Dirk Eddelbuettel
On 10 November 2023 at 14:19, Martin Maechler wrote: | >> 2. In the installed R in /where/you/want/R/to/go, there is no even etc folder, there are only the folders bin, lib and share. That would appear to be an error in the locally installed R. What the package does has been discussed

Re: [Rd] [R] Why Rprofile.site is not built with manual installation of R devel in linux?

2023-11-10 Thread Dirk Eddelbuettel
On 10 November 2023 at 14:19, Martin Maechler wrote: | >> 2. In the installed R in /where/you/want/R/to/go, there is no even etc folder, there are only the folders bin, lib and share. That would appear to be an error in the locally installed R. What the package does has been discussed

Bug#1054657: transition: r-bioc-biocgenerics

2023-11-07 Thread Dirk Eddelbuettel
On 7 November 2023 at 14:58, Andreas Tille wrote: | Do you see any way to answer the question that is discussed in this | thread by r2u how to know whether new Bioconductor packages might have | new dependencies not yet packaged for Debian? "Kinda. Sorta. Not fully." I have written related code

Bug#1054657: transition: r-bioc-biocgenerics

2023-11-07 Thread Dirk Eddelbuettel
On 7 November 2023 at 14:58, Andreas Tille wrote: | Do you see any way to answer the question that is discussed in this | thread by r2u how to know whether new Bioconductor packages might have | new dependencies not yet packaged for Debian? "Kinda. Sorta. Not fully." I have written related code

Bug#1054657: transition: r-bioc-biocgenerics

2023-11-07 Thread Dirk Eddelbuettel
On 7 November 2023 at 22:01, Charles Plessy wrote: | One possible direction would be to leverage the work done by Dirk and | others in r2u, where the Bioc transition is over, and for each package | in Debian, look if the r2u equivalent has a dependency not in Debian. | |

Bug#1054657: transition: r-bioc-biocgenerics

2023-11-07 Thread Dirk Eddelbuettel
On 7 November 2023 at 22:01, Charles Plessy wrote: | One possible direction would be to leverage the work done by Dirk and | others in r2u, where the Bioc transition is over, and for each package | in Debian, look if the r2u equivalent has a dependency not in Debian. | |

[R-pkg-devel] Fortune candidate Re: Issue with R Package on CRAN - OpenMP and clang17

2023-10-31 Thread Dirk Eddelbuettel
On 31 October 2023 at 19:58, Ivan Krylov wrote: | [...] The computers that helped launch the first | people into space had 2 kWords of memory, but nowadays you need more | than 256 MBytes of RAM to launch a bird into a pig and 10 GBytes of | storage in order to compile a compiler. This is what

Re: [R-pkg-devel] Too many cores used in examples (not caused by data.table)

2023-10-30 Thread Dirk Eddelbuettel
I have some better news. While we established that 'in theory' setting the environment variable OMP_NUM_THREADS would help (and I maintain that it is a great PITA that CRAN does not do so as a general fix for this issue) it does *not help* once R is started. OpenMP only considers the variable

Re: [Rd] Wayland Display Support in R Plot

2023-10-30 Thread Dirk Eddelbuettel
On 30 October 2023 at 13:17, Willem Ligtenberg via R-devel wrote: | I just tried it on Ubuntu 23.10. It seems to just work. | See screenshot here: https://nextcloud.wligtenberg.nl/s/jnbDT4ZiHw2JQ8H | I should be using wayland, and as far as I know I haven't done anything | special to make this

Bug#1054921: [Quantlib-dev] Build error for quantlib-swig on mips64el

2023-10-30 Thread Dirk Eddelbuettel
On 30 October 2023 at 12:23, Luigi Ballabio wrote: | Hello Dirk, unfortunately I have no idea what can cause this — do you think it | possible that the size of the wrappers crossed some threshold and relocations | started to occur that weren't there before? Adrian (CC'ed) supplied a merge

Bug#1054921: [Quantlib-dev] Build error for quantlib-swig on mips64el

2023-10-30 Thread Dirk Eddelbuettel
On 30 October 2023 at 12:23, Luigi Ballabio wrote: | Hello Dirk, unfortunately I have no idea what can cause this — do you think it | possible that the size of the wrappers crossed some threshold and relocations | started to occur that weren't there before? Adrian (CC'ed) supplied a merge

Re: [Rd] Wayland Display Support in R Plot

2023-10-29 Thread Dirk Eddelbuettel
On 30 October 2023 at 09:20, Simon Urbanek wrote: | > On 30/10/2023, at 8:38 AM, Dirk Eddelbuettel wrote: | > On 30 October 2023 at 07:54, Paul Murrell wrote: | > | I am unaware of any Wayland display support. | > | | > | One useful way forward would be an R package that provide

Re: [Rd] Wayland Display Support in R Plot

2023-10-29 Thread Dirk Eddelbuettel
On 30 October 2023 at 07:54, Paul Murrell wrote: | I am unaware of any Wayland display support. | | One useful way forward would be an R package that provides such a device | (along the lines of 'Cairo', 'tikzDevice', et al) As I understand it, it is a protocol, and not a device. Several

Bug#1054921: Build error for quantlib-swig on mips64el

2023-10-29 Thread Dirk Eddelbuettel
The Debian package fails to build now on mipsel, a log is at [1]. The gist seems to be a relocation error: g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -O0 -g0 -mxgot --param ggc-min-expand=20 -DBOOST_NO_AUTO_PTR build/temp.linux-mips64-cpython-311/QuantLib/quantlib_wrap.o

Bug#1054921: Build error for quantlib-swig on mips64el

2023-10-29 Thread Dirk Eddelbuettel
The Debian package fails to build now on mipsel, a log is at [1]. The gist seems to be a relocation error: g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -O0 -g0 -mxgot --param ggc-min-expand=20 -DBOOST_NO_AUTO_PTR build/temp.linux-mips64-cpython-311/QuantLib/quantlib_wrap.o

Bug#1054921: quantlib-swig: FTBFS on mips64el

2023-10-28 Thread Dirk Eddelbuettel
On 28 October 2023 at 22:53, Sebastian Ramacher wrote: | Source: quantlib-swig | Version: 1.32-1 | Severity: serious | Tags: ftbfs | Justification: fails to build from source (but built successfully in the past) | X-Debbugs-Cc: sramac...@debian.org | |

Bug#1054921: quantlib-swig: FTBFS on mips64el

2023-10-28 Thread Dirk Eddelbuettel
On 28 October 2023 at 22:53, Sebastian Ramacher wrote: | Source: quantlib-swig | Version: 1.32-1 | Severity: serious | Tags: ftbfs | Justification: fails to build from source (but built successfully in the past) | X-Debbugs-Cc: sramac...@debian.org | |

Bug#1054657: transition: r-bioc-biocgenerics

2023-10-27 Thread Dirk Eddelbuettel
On 27 October 2023 at 16:43, Andreas Tille wrote: | Am Fri, Oct 27, 2023 at 09:19:22AM -0500 schrieb Dirk Eddelbuettel: | > | > | BioConductor has just released version 3.17. Since the next r-base | > | > Typo: 3.18 | | Yes. Thanks for pointing this out. | | > | release is

Bug#1054657: transition: r-bioc-biocgenerics

2023-10-27 Thread Dirk Eddelbuettel
On 27 October 2023 at 16:43, Andreas Tille wrote: | Am Fri, Oct 27, 2023 at 09:19:22AM -0500 schrieb Dirk Eddelbuettel: | > | > | BioConductor has just released version 3.17. Since the next r-base | > | > Typo: 3.18 | | Yes. Thanks for pointing this out. | | > | release is

Bug#1054657: transition: r-bioc-biocgenerics

2023-10-27 Thread Dirk Eddelbuettel
On 27 October 2023 at 16:00, Andreas Tille wrote: | Package: release.debian.org | Severity: normal | User: release.debian@packages.debian.org | Usertags: transition | X-Debbugs-Cc: r-bioc-biocgener...@packages.debian.org, debia...@lists.debian.org | Control: affects -1 +

Bug#1054657: transition: r-bioc-biocgenerics

2023-10-27 Thread Dirk Eddelbuettel
On 27 October 2023 at 16:00, Andreas Tille wrote: | Package: release.debian.org | Severity: normal | User: release.debian@packages.debian.org | Usertags: transition | X-Debbugs-Cc: r-bioc-biocgener...@packages.debian.org, debia...@lists.debian.org | Control: affects -1 +

Re: [R-pkg-devel] Too many cores used in examples (not caused by data.table)

2023-10-27 Thread Dirk Eddelbuettel
Hi Jouni, On 27 October 2023 at 13:02, Helske, Jouni wrote: | Actually, the OMP_NUM_THREADS worked for vignettes and testthat tests, but | didn't help with the examples. However, I just wrapped the problematic example Now I am confused. What is your understanding of why it helps in one place

Re: [R-pkg-devel] Too many cores used in examples (not caused by data.table)

2023-10-27 Thread Dirk Eddelbuettel
Jouni, My CRANberriesFeed reports a new bssm package at CRAN, congratulations for sorting this out. [1,2] The OMP_NUM_THREADS setting is indeed all it takes, and it _does_ seem to be read even from a running session: i.e. you can set this inside an R session and the OpenMP code considers it in

Re: [R-sig-Debian] Error in ragg... Graphics API version mismatch

2023-10-27 Thread Dirk Eddelbuettel
On 27 October 2023 at 13:00, Johan Andresen wrote: | I am sorry yet delighted to announce that the problem has been resolved. | ragg didn't install successfully in the first place. When it was, there was | no graphics API mismatch. Apologies for the spam; this entry may be | deleted. Johan Yes.

Re: [R-pkg-devel] API client package failing due to API authentication

2023-10-26 Thread Dirk Eddelbuettel
On 26 October 2023 at 11:14, Cole Johanson wrote: | My package https://github.com/cole-johanson/smartsheetr requires an | environment variable, the API access token, to run most of the functions. | The steps for setting this are documented in the README, but my package is | being auto-rejected

Re: [R-pkg-devel] Too many cores used in examples (not caused by data.table)

2023-10-25 Thread Dirk Eddelbuettel
On 24 October 2023 at 08:15, Dirk Eddelbuettel wrote: | | On 24 October 2023 at 15:55, Ivan Krylov wrote: | | В Tue, 24 Oct 2023 10:37:48 + | | "Helske, Jouni" пишет: | | | | > Examples with CPU time > 2.5 times elapsed time | | > user system elapsed ratio |

Re: [R-pkg-devel] Too many cores used in examples (not caused by data.table)

2023-10-24 Thread Dirk Eddelbuettel
On 24 October 2023 at 15:55, Ivan Krylov wrote: | В Tue, 24 Oct 2023 10:37:48 + | "Helske, Jouni" пишет: | | > Examples with CPU time > 2.5 times elapsed time | > user system elapsed ratio | > exchange 1.196 0.04 0.159 7.774 | | I've downloaded the archived copy of the

Re: [R-pkg-devel] Too many cores used in examples (not caused by data.table)

2023-10-20 Thread Dirk Eddelbuettel
On 19 October 2023 at 05:57, Helske, Jouni wrote: | I am having difficulties in getting the latest version of the bssm (https://github.com/helske/bssm) package to CRAN, as the pretest issues a NOTE that the package uses too many cores in some of the examples ("Examples with CPU time > 2.5

Re: [R-pkg-devel] Suppressing long-running vignette code in CRAN submission

2023-10-17 Thread Dirk Eddelbuettel
else, specifically using R.rsp. | > | > Best, | > John | > | > On 2023-10-17 4:02 a.m., Dirk Eddelbuettel wrote: | >> Caution: External email. | >> On 16 October 2023 at 10:42, Kevin R Coombes wrote: | >> | Produce a PDF file yourself, then use the "as.is" feat

Re: [R-pkg-devel] Suppressing long-running vignette code in CRAN submission

2023-10-17 Thread Dirk Eddelbuettel
is not accessible. Loading a precomputed set is similar. I may be doing that in the much older never quite finished gcbd package and its vignette. Hope this helps, maybe more once I am back home. Cheers, Dirk | Best, | John | | On 2023-10-17 4:02 a.m., Dirk Eddelbuettel wrote: | > Caution: Exter

Re: [R-pkg-devel] Suppressing long-running vignette code in CRAN submission

2023-10-17 Thread Dirk Eddelbuettel
On 16 October 2023 at 10:42, Kevin R Coombes wrote: | Produce a PDF file yourself, then use the "as.is" feature of the R.rsp | package. For completeness, that approach also works directly with Sweave. Described in a blog post by Mark van der Loo in 2019, and used in a number of packages

Bug#1037439: Unlikely to be a bug in r-base

2023-10-16 Thread Dirk Eddelbuettel
On 16 October 2023 at 11:41, Andreas Beckmann wrote: | On 05/10/2023 17.05, Dirk Eddelbuettel wrote: | > | > Andreas, | > | > This looks like an error: | > | > > reassign 1037439 src:r-base | > Bug #1037439 {Done: Dirk Eddelbuettel } [r-cran-rstan] r-cran-

Bug#1037439: Unlikely to be a bug in r-base

2023-10-05 Thread Dirk Eddelbuettel
Andreas, This looks like an error: > reassign 1037439 src:r-base Bug #1037439 {Done: Dirk Eddelbuettel } [r-cran-rstan] r-cran-rstan/armhf FTBFS with r-cran-bh 1.74, works with boost 1.81 Bug reassigned from package 'r-cran-rstan' to 'src:r-base'. No longer marked as fo

Re: [ESS] run R code upon starting each ESS session

2023-10-03 Thread Dirk Eddelbuettel via ESS-help
On 3 October 2023 at 18:52, Manuel Teodoro via ESS-help wrote: | Is there a way to run R code upon starting each ESS session? | | Something like Rprofile but I'd like to make it more dependent to emacs. | | What I want is to have a few options settings in my R sessions by default. | Since I

Bug#1052655: gsl: CVE-2020-35357

2023-09-26 Thread Dirk Eddelbuettel
Hi Salvatore, Looks like we emailed concurrently :) (or concurrently enough for my batched mail setup). On 26 September 2023 at 14:19, Salvatore Bonaccorso wrote: | Hi Dirk, | | On Tue, Sep 26, 2023 at 06:54:31AM -0500, Dirk Eddelbuettel wrote: | > | > On 25 September 2023 at

Bug#1052655: gsl: CVE-2020-35357

2023-09-26 Thread Dirk Eddelbuettel
Fix made, built, uploaded and committed to the package's salsa repo. Dirk -- dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org

Bug#1052655: gsl: CVE-2020-35357

2023-09-26 Thread Dirk Eddelbuettel
On 25 September 2023 at 20:58, Salvatore Bonaccorso wrote: | Source: gsl | Version: 2.7.1+dfsg-5 | Severity: important | Tags: security upstream | Forwarded: https://savannah.gnu.org/bugs/?59624 | X-Debbugs-Cc: car...@debian.org, Debian Security Team | Control: found -1

Re: [ESS] How to Duplicate Previous Functionality/Workflow

2023-09-23 Thread Dirk Eddelbuettel via ESS-help
On 22 September 2023 at 07:04, Stephen J. Eglen via ESS-help wrote: | 2. A non-answer to the original question, but I prefer writing Makefiles | to build my documents, rather than using Emacs functionality. Emacs has | a good interface to running make (e.g. through M-x compile). Use | whatever

Re: [Rcpp-devel] Life-cycle of Rcpp::XPtr

2023-09-23 Thread Dirk Eddelbuettel
PS There is another neat use case where a shared_ptr is allocated. Now we cannot wrap a shared_ptr in an XPtr but ... we can stick the shared_ptr into a struct, and allocate that with new and then make_xptr. You are then back to well-understood C++ semantics. Dirk -- dirk.eddelbuettel.com |

Re: [Rcpp-devel] Life-cycle of Rcpp::XPtr

2023-09-23 Thread Dirk Eddelbuettel
Hi Ralf, On 23 September 2023 at 08:28, Ralf Stubner wrote: | I have a question concerning the file-cycle of Rcpp::XPtr: Consider a | XPtr with the default delete finalizer wrapping some pointer. If I use | the copy constructor to create another XPtr, this is pointing at the | same underlying

Bug#1052291: ITP: r-cran-writexl -- GNU R package for export Excel xlsx format

2023-09-19 Thread Dirk Eddelbuettel
Package: wnpp Owner: Dirk Eddelbuettel Severity: wishlist * Package name: r-cran-writexl Version : 1.4.2 Upstream Author : Jeroen Ooms * URL or Web page : https://cran.r-project.org/package=writexl * License : BSD-2 Description : GNU R package to write xlsx file

Bug#1052291: ITP: r-cran-writexl -- GNU R package for export Excel xlsx format

2023-09-19 Thread Dirk Eddelbuettel
Package: wnpp Owner: Dirk Eddelbuettel Severity: wishlist * Package name: r-cran-writexl Version : 1.4.2 Upstream Author : Jeroen Ooms * URL or Web page : https://cran.r-project.org/package=writexl * License : BSD-2 Description : GNU R package to write xlsx file

Bug#1052291: ITP: r-cran-writexl -- GNU R package for export Excel xlsx format

2023-09-19 Thread Dirk Eddelbuettel
Package: wnpp Owner: Dirk Eddelbuettel Severity: wishlist * Package name: r-cran-writexl Version : 1.4.2 Upstream Author : Jeroen Ooms * URL or Web page : https://cran.r-project.org/package=writexl * License : BSD-2 Description : GNU R package to write xlsx file

[R-pkg-devel] Cadence of macOS builds at CRAN

2023-09-14 Thread Dirk Eddelbuettel
Simon, A new package of mine [1] appeared on CRAN on Sep 5. Respecting the one week gap, I made a small update on Sep 12. Today is Sep 14. There are still no builds for macOS r-release (arm64) macOS r-oldrel (arm64) macOS r-release (x86_64) but we do have two oldrel releases. Weirder

Bug#1050955: rpy2: please make the build reproducible

2023-08-31 Thread Dirk Eddelbuettel
On 31 August 2023 at 11:37, Chris Lamb wrote: | Source: rpy2 | Version: 3.5.13-5 | Severity: normal | Tags: patch | User: reproducible-bui...@lists.alioth.debian.org | Usertags: timestamps | X-Debbugs-Cc: reproducible-b...@lists.alioth.debian.org | | Hi, | | Whilst working on the Reproducible

Re: [R-pkg-devel] What to do when a package is archived from CRAN

2023-08-31 Thread Dirk Eddelbuettel
On 31 August 2023 at 07:32, SHIMA Tatsuya wrote: | I submitted prqlr 0.5.1 yesterday, which is almost identical to prqlr | 0.5.0, and prqlr is now available again on CRAN. | Thanks to the CRAN reviewers for their quick reaction. And it is gone again (per CRANberries). Never a dull moment with

Bug#1050432: rpy2: FTBFS on mips64el

2023-08-27 Thread Dirk Eddelbuettel
On 27 August 2023 at 18:44, YunQiang Su wrote: | Maybe there is something wrong with ffi. (In fact the complex support of mips | was added by me. ;) Hah. | I am looking for a way to use debug to debug the extensions. | If you have any documents, can you point it to me. I can help you with R,

Bug#1050432: rpy2: FTBFS on mips64el

2023-08-27 Thread Dirk Eddelbuettel
On 27 August 2023 at 18:44, YunQiang Su wrote: | Maybe there is something wrong with ffi. (In fact the complex support of mips | was added by me. ;) Hah. | I am looking for a way to use debug to debug the extensions. | If you have any documents, can you point it to me. I can help you with R,

Re: Bug#1050432: rpy2: FTBFS on mips64el

2023-08-27 Thread Dirk Eddelbuettel
On 27 August 2023 at 18:44, YunQiang Su wrote: | Maybe there is something wrong with ffi. (In fact the complex support of mips | was added by me. ;) Hah. | I am looking for a way to use debug to debug the extensions. | If you have any documents, can you point it to me. I can help you with R,

Bug#1050432: rpy2: FTBFS on mips64el

2023-08-27 Thread Dirk Eddelbuettel
On 27 August 2023 at 14:09, YunQiang Su wrote: | Dirk Eddelbuettel 于2023年8月27日周日 00:15写道: | > | > | > Hi all, | > | > As the test failures for complex valued variables appeared to be systemic on | > the 'mips64el' platform, I buckled down, taught myself some Python ==:-) a

Bug#1050432: rpy2: FTBFS on mips64el

2023-08-27 Thread Dirk Eddelbuettel
On 27 August 2023 at 14:09, YunQiang Su wrote: | Dirk Eddelbuettel 于2023年8月27日周日 00:15写道: | > | > | > Hi all, | > | > As the test failures for complex valued variables appeared to be systemic on | > the 'mips64el' platform, I buckled down, taught myself some Python ==:-) a

Re: Bug#1050432: rpy2: FTBFS on mips64el

2023-08-27 Thread Dirk Eddelbuettel
On 27 August 2023 at 14:09, YunQiang Su wrote: | Dirk Eddelbuettel 于2023年8月27日周日 00:15写道: | > | > | > Hi all, | > | > As the test failures for complex valued variables appeared to be systemic on | > the 'mips64el' platform, I buckled down, taught myself some Python ==:-) a

Bug#1050432: rpy2: FTBFS on mips64el

2023-08-26 Thread Dirk Eddelbuettel
Hi all, As the test failures for complex valued variables appeared to be systemic on the 'mips64el' platform, I buckled down, taught myself some Python ==:-) and conditioned the number of failing tests away via @pytest.mark.skipif(platform.machine() == 'mips64' and sys.byteorder ==

Bug#1050432: rpy2: FTBFS on mips64el

2023-08-26 Thread Dirk Eddelbuettel
Hi all, As the test failures for complex valued variables appeared to be systemic on the 'mips64el' platform, I buckled down, taught myself some Python ==:-) and conditioned the number of failing tests away via @pytest.mark.skipif(platform.machine() == 'mips64' and sys.byteorder ==

Re: Bug#1050432: rpy2: FTBFS on mips64el

2023-08-26 Thread Dirk Eddelbuettel
Hi all, As the test failures for complex valued variables appeared to be systemic on the 'mips64el' platform, I buckled down, taught myself some Python ==:-) and conditioned the number of failing tests away via @pytest.mark.skipif(platform.machine() == 'mips64' and sys.byteorder ==

Re: [R-pkg-devel] Re-building vignettes had CPU time 9.2 times elapsed time

2023-08-25 Thread Dirk Eddelbuettel
On 25 August 2023 at 18:48, Jeff Newmiller wrote: | You have a really bizarre way of twisting what others are saying, Dirk. I have seen no-one here saying 'limit R to 2 threads' except for you, as a way to paint opposing views to be absurd. That's too cute. Nobody needs to repeat it, and

Re: [R-pkg-devel] Re-building vignettes had CPU time 9.2 times elapsed time

2023-08-25 Thread Dirk Eddelbuettel
On 26 August 2023 at 12:05, Simon Urbanek wrote: | In reality it's more people running R on their laptops vs the rest of the world. My point was that we also have 'single user on really Yuge workstation'. Plus we all know that those users are often not sysadmins, and do not have our levels

Re: [R-pkg-devel] Re-building vignettes had CPU time 9.2 times elapsed time

2023-08-25 Thread Dirk Eddelbuettel
On 25 August 2023 at 18:45, Duncan Murdoch wrote: | The real problem is that there are two stubborn groups opposing each | other: the data.table developers and the CRAN maintainers. The former | think users should by default dedicate their whole machine to | data.table. The latter think

Re: [R-pkg-devel] Trouble with long-running tests on CRAN debian server

2023-08-25 Thread Dirk Eddelbuettel
On 25 August 2023 at 15:37, Uwe Ligges wrote: | | | On 23.08.2023 16:00, Scott Ritchie wrote: | > Hi Uwe, | > | > I agree and have also been burnt myself by programs occupying the | > maximum number of cores available. | > | > My understanding is that in the absence of explicit

Re: [R-pkg-devel] Re-building vignettes had CPU time 9.2 times elapsed time

2023-08-25 Thread Dirk Eddelbuettel
On 24 August 2023 at 07:42, Fred Viole wrote: | Hi, I am receiving a NOTE upon submission regarding the re-building of | vignettes for CPU time for the Debian check. | | I am unable to find any documented instances or solutions to this issue. | The vignettes currently build in 1m 54.3s locally

Bug#1050432: rpy2: FTBFS on mips64el

2023-08-24 Thread Dirk Eddelbuettel
Paul, Thanks for the hint. I was aware and had been meaning to bring this up with Laurent (upstream, now CCed). Laurent: I should have access to a 'porterbox' running mips64el if you have an idea about what may be going on here / have a branch to test. Paul: While I have you here, and as all

Bug#1050432: rpy2: FTBFS on mips64el

2023-08-24 Thread Dirk Eddelbuettel
Paul, Thanks for the hint. I was aware and had been meaning to bring this up with Laurent (upstream, now CCed). Laurent: I should have access to a 'porterbox' running mips64el if you have an idea about what may be going on here / have a branch to test. Paul: While I have you here, and as all

Re: [R-sig-Debian] Is r2u at 3.4.1? [branch about handling package collisions under Ubuntu/Debian]

2023-08-24 Thread Dirk Eddelbuettel
My thanks to Ivan for catching that it was of course a legit Ubuntu mirror, which I had missed. Can we (ever so briefly, no need for long posts) get back to the issue at hand: was there a package you wanted to install from r2u, but could not because of another repo or build infelicity. If so,

Re: [R-sig-Debian] Is r2u at 3.4.1? [branch about handling package collisions under Ubuntu/Debian]

2023-08-23 Thread Dirk Eddelbuettel
Chris, This got a little long so I'll chop a few things down. On 22 August 2023 at 19:38, Chris Evans wrote: | On 16/08/2023 00:06, Dirk Eddelbuettel wrote: | > | > That can happen, and pinning can help. I would suggest to look at 'apt-cache | > polict nameofthepackagehere'. (

Re: [R-pkg-devel] Setting valgrind options when running R CMD check --use-valgrind

2023-08-23 Thread Dirk Eddelbuettel
On 23 August 2023 at 16:49, Duncan Murdoch wrote: | On 23/08/2023 2:54 p.m., Dirk Eddelbuettel wrote: | > | > When I invoke valgrind via | > R -d valgrind -e '...' | > the options in the file ~/.valgrindrc are being picked up. Good. | > | > When I invok valgrind via |

[R-pkg-devel] Setting valgrind options when running R CMD check --use-valgrind

2023-08-23 Thread Dirk Eddelbuettel
When I invoke valgrind via R -d valgrind -e '...' the options in the file ~/.valgrindrc are being picked up. Good. When I invok valgrind via R CMD check --use-valgrind ... the options in the file ~/.valgrindrc are NOT being picked up. Bad. And valgrind complains. How can I add the

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