Re: screen-4.6.2 build fails

2017-11-15 Thread Martin MOKREJŠ
Hi Henry, you should check config.log file for the error why -lncursesw was not found. Probably was found but the linking test failed for some reason. In general, you should provide config.log and config.status if you really want somebody to help you with this. Do not post them to the email

Re: Cannot re-attach to screen session after screen-4.3.1-r1 to screen-4.4.0 upgrade

2017-04-11 Thread Martin MOKREJŠ
Hi Amadeusz, Amadeusz Sławiński wrote: > On Tue, 11 Apr 2017 13:44:32 +0200 > Martin MOKREJŠ <mmokr...@gmail.com> wrote: > >> Hi, >> does anyone have a clue why I cannot re-attached to my existing screen >> sessions after upgrade? >> I use "scr

Cannot re-attach to screen session after screen-4.3.1-r1 to screen-4.4.0 upgrade

2017-04-11 Thread Martin MOKREJŠ
Hi, does anyone have a clue why I cannot re-attached to my existing screen sessions after upgrade? I use "screeen -R $ID". What should I check? Thanks, Martin ___ screen-users mailing list screen-users@gnu.org

Re: ModemManager and ppp

2017-03-13 Thread Martin MOKREJŠ
Aleksander Morgado wrote: > On Fri, Mar 10, 2017 at 5:24 PM, Tom Hayward wrote: >> Is this a matter of configuration, lack of support, or simply outside >> the scope of ModemManager? Is there a way to use ModemManager to >> initiate the ppp connection? > > Initiating a

Re: ModemManager-1.6.2: does not work with Huawei E3372h ??? -153

2017-01-13 Thread Martin MOKREJŠ
Hi , thank you Alexander for clarification, I infer there is something wrong with my cdc-wdm then. Isn't there anything interesting in the NM debug logs I sent to the list already? I returned from win7 now. I can confirm Win7 use Mobile broadband network card #9, using driver

Re: ModemManager-1.6.2: does not work with Huawei E3372h ??? -153

2017-01-13 Thread Martin MOKREJŠ
Re-sending, with attachments. Hi Thomas, >>> This device should use the wwan-device by huawei_cdc_ncm. >> >> I am glad to hear that as well, but can you tell me if ModemManager >> realizes that wwan0 was renamed by OpenRC to wwp0s29u1u2i2 ? Does >> that interfere anyhow? >> > > As Aleksander

Re: ModemManager-1.6.2: does not work with Huawei E3372h ??? -153

2017-01-13 Thread Martin MOKREJŠ
Hi Thomas, >>> This device should use the wwan-device by huawei_cdc_ncm. >> >> I am glad to hear that as well, but can you tell me if ModemManager >> realizes that wwan0 was renamed by OpenRC to wwp0s29u1u2i2 ? Does >> that interfere anyhow? >> > > As Aleksander already mentioned this is an

Re: ModemManager-1.6.2: does not work with Huawei E3372h-153

2017-01-13 Thread Martin MOKREJŠ
Hi Aleksander, Aleksander Morgado wrote: > Hey Martin, > > On Thu, Jan 12, 2017 at 9:46 PM, Martin MOKREJŠ <mmokr...@gmail.com> wrote: >> I propose improving mmcli manpage. The EXAMPLES section should start with: >> 1. how shall one figure out where is any modem seen &

Re: ModemManager-1.6.2: does not work with Huawei E3372h ??? -153

2017-01-13 Thread Martin MOKREJŠ
Hi Aleksander, Aleksander Morgado wrote: > Hey, > >>> >>> I am a little bit surprised that the modem uses the ppp-interface in your >>> case. When I read your logfiles right, then you have a device which is sold >>> under the name "Speedsick LTE V" in Germany.

Re: ModemManager-1.6.2: does not work with Huawei E3372h-153

2017-01-12 Thread Martin MOKREJŠ
I forgot to add what I see in Connection information from nm-applet: Interface: GSM (ttyUSB0) Driver: huawei_cdc_ncm, option1 Martin ___ ModemManager-devel mailing list ModemManager-devel@lists.freedesktop.org

Re: ModemManager-1.6.2: does not work with Huawei E3372h-153

2017-01-12 Thread Martin MOKREJŠ
ot relevant to mmcli, a hint where to go next to get use of the "connected" modem would be very helpful. Aleksander Morgado wrote: > On Thu, Jan 12, 2017 at 3:49 PM, Martin MOKREJŠ <mmokr...@gmail.com> wrote: >> # mmcli --connect -m /org/freedesktop/ModemManager1/Modem/0 >

Re: set command overrides my ARGV array

2017-01-08 Thread Martin MOKREJŠ
Hi, I forgot to say thanks to all of you who responded. I think the manual page needs improvement. This is just confusing. Martin Eric Blake wrote: > On 12/27/2016 10:21 AM, Martin MOKREJŠ wrote: >> Hi, >> I wanted to enable error code reporting for piped processes. This >

set command overrides my ARGV array

2016-12-27 Thread Martin MOKREJŠ
Hi, I wanted to enable error code reporting for piped processes. This should be doable by "set -o pipeline on". The problem is it kills my $* array and defines $1="on". $ bash -x /tmp/a.sh arg1 arg2 arg3 + for f in $* + echo arg1 arg1 + for f in $* + echo arg2 arg2 + for f in $* + echo arg3

Re: [Samtools-help] Limit number of bam files Samtools1.3

2016-11-30 Thread Martin MOKREJŠ
Hi Hans, hans.daetwy...@ecodev.vic.gov.au wrote: > Dear All, > > I have a large set of bovine samples (~2700 bam files, on average about 10x > coverage) that I want to run mpileup on. I am getting an error that seems to > indicate that there is a hard coded limit of bam files in Samtools. > >

Re: [Samtools-help] samtools calmd behavior and MD tag

2016-08-02 Thread Martin MOKREJŠ
James Bonfield wrote: > On Tue, Aug 02, 2016 at 01:44:01PM +0200, Martin MOKREJ? wrote: >>> The warnings are there because it is correcting the aligner output. >>> The proper fix is to fix the aligners to produce the correct MD in the >>> first place, not to break calmd to be buggy in the same

Re: [Samtools-help] samtools calmd behavior and MD tag

2016-08-02 Thread Martin MOKREJŠ
ing, Bingo! ;-) Of course I could have used shell pipes -- but I wanted to have the BAM available after each step. Martin > > Heng > > On Aug 2, 2016, at 9:47 AM, Martin MOKREJŠ <mmokr...@gmail.com> wrote: > >> Keiran Raine wrote: >>> For BAM in/out yes: >>&

Re: [Samtools-help] samtools calmd behavior and MD tag

2016-08-02 Thread Martin MOKREJŠ
Keiran Raine wrote: > For BAM in/out yes: > > inputthreads=<[1]>: input helper threads (for inputformat=bam > only, default: 1) > outputthreads=<[1]> : output helper threads (for outputformat=bam > only, default: 1) bamsort fixmates=1 calmdnm=1

Re: [Samtools-help] samtools calmd behavior and MD tag

2016-08-02 Thread Martin MOKREJŠ
Opened as https://github.com/lh3/bwa/issues/82 , feel free to chim in. -- ___ Samtools-help mailing list Samtools-help@lists.sourceforge.net

Re: [Samtools-help] samtools calmd behavior and MD tag

2016-08-02 Thread Martin MOKREJŠ
James Bonfield wrote: > On Tue, Aug 02, 2016 at 11:57:52AM +0200, Martin MOKREJ? wrote: >> Could samtools calmd apply the following logic for bwa-processed input? >> Get positions of all N's in the read. >> Do not complain about those positions which are based on N's. >> Do report other

Re: [easybuild] Gentoo ebuild to EasyBuild conversion

2016-07-14 Thread Martin MOKREJŠ
Hi Fotis, Fotis Georgatos wrote: Hi Martin, On Jul 12, 2016, at 7:08 PM, Martin MOKREJŠ <mmokr...@gmail.com> wrote: Finally, I discovered Gentoo::RAP which has a bit cryptic documentation and the table at the top of thehttps://wiki.gentoo.org/wiki/Prefix/libc page drives me always

[easybuild] Gentoo ebuild to EasyBuild conversion

2016-06-09 Thread Martin MOKREJŠ
Hi, I would like to know if there is some automated way to install Gentoo packages through EasyBuild. I want to take packages available in science overlay of Gentoo Linux at http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git and install them on a non-Gentoo host. Is it doable? ;-) I

Re: [PATCH] USB: EHCI: avoid undefined pointer arithmetic and placate UBSAN

2016-06-06 Thread Martin MOKREJŠ
Hi Alan, thank you for your effort. I applied it to 4.6.0 and I haven't seen the USBSAN message reported anymore about this (though I do for ext4 and IP stack for example). Tested-By: Martin MOKREJŠ <mmokr...@gmail.com> Alan Stern wrote: Several people have reported that UBSAN doesn'

4.6.0-rc5: kmemleak around dev_pm_qos_constraints_allocate

2016-04-28 Thread Martin MOKREJŠ
Hi, anyone has ever seen this? [ 2477.001127] kmemleak: 8 new suspected memory leaks (see /sys/kernel/debug/kmemleak) [ 6249.251894] perf: interrupt took too long (2506 > 2500), lowering kernel.perf_event_max_sample_rate to 79800 [ 9951.944091] perf: interrupt took too long (3136 > 3132),

Re: 4.5.1: UBSAN: Undefined behaviour in ./arch/x86/include/asm/atomic.h:156:9

2016-04-21 Thread Martin MOKREJŠ
Greg KH wrote: On Thu, Apr 21, 2016 at 11:18:16AM +0200, Martin MOKREJŠ wrote: Hi Greg, thank you for your answer. Greg KH wrote: On Thu, Apr 21, 2016 at 12:22:49AM +0200, Martin MOKREJŠ wrote: Hi, I am not certain to to forward this to, so I am trying linux-usb and ext4. Please add

Re: 4.5.1: UBSAN: Undefined behaviour in ./arch/x86/include/asm/atomic.h:156:9

2016-04-21 Thread Martin MOKREJŠ
Hi Greg, thank you for your answer. Greg KH wrote: On Thu, Apr 21, 2016 at 12:22:49AM +0200, Martin MOKREJŠ wrote: Hi, I am not certain to to forward this to, so I am trying linux-usb and ext4. Please add relevant people/lists, thank you. # dmesg | grep "UBSAN: Undefined beha

4.5.1: UBSAN: Undefined behaviour in ./arch/x86/include/asm/atomic.h:156:9

2016-04-20 Thread Martin MOKREJŠ
Hi, I am not certain to to forward this to, so I am trying linux-usb and ext4. Please add relevant people/lists, thank you. # dmesg | grep "UBSAN: Undefined behaviour" [2.638843] UBSAN: Undefined behaviour in drivers/usb/host/ehci-hub.c:873:47 [8.553620] UBSAN: Undefined behaviour in

Re: 4.3.0: AUKEY CB-H16 13+2port USB3 VIA812 hub does not recognize Prolific-based USB3-SATA dongle

2015-12-28 Thread Martin MOKREJŠ
Nyman wrote: On 25.11.2015 00:09, Martin MOKREJŠ wrote: Hi, I have relatively new 13port USB 3.0 HUB based on VIAlabs 812 chipset with two power-only charging ports: 1x1.5A and 1x2.4A (AUKEY CB-H16, from Amazon). Sometimes, the hub (actually four 4-port hubs stitched together) chokes and all

Re: 4.3.0: AUKEY CB-H16 13+2port USB3 VIA812 hub does not recognize Prolific-based USB3-SATA dongle

2015-12-01 Thread Martin MOKREJŠ
Mathias Nyman wrote: Hi There are some xhci resume related issues which might be related to this. Host and device initiated resume functions race, and we end up with this similar output: Nov 26 02:24:18 vostro kernel: xhci_hcd :0b:00.0: suspend failed because a port is resuming Nov 26

[no subject]

2015-12-01 Thread Martin MOKREJŠ
subscribe -- To unsubscribe from this list: send the line "unsubscribe linux-usb" in the body of a message to majord...@vger.kernel.org More majordomo info at http://vger.kernel.org/majordomo-info.html

Re: 4.3.0: AUKEY CB-H16 13+2port USB3 VIA812 hub does not recognize Prolific-based USB3-SATA dongle

2015-11-26 Thread Martin MOKREJŠ
sorry there is that much data but I hope you can concentrate using timestamps easily on those parts which seem interesting enough. Martin Mathias Nyman wrote: On 25.11.2015 00:09, Martin MOKREJŠ wrote: Hi, I have relatively new 13port USB 3.0 HUB based on VIAlabs 812 chipset with two powe

Re: [Matplotlib-users] ImportError: No module named _winreg

2015-05-06 Thread Martin MOKREJŠ
=547928 Tom On Tue, Apr 28, 2015, 08:14 Martin MOKREJŠ mmokr...@gmail.com mailto:mmokr...@gmail.com wrote: Hi Thomas, thank you for your thoughts. But numpy is installed: $ python Python 2.7.9 (default, Apr 10 2015, 16:21:10) [GCC 4.9.2] on linux2 Type help

[Matplotlib-users] ImportError: No module named _winreg

2015-04-27 Thread Martin MOKREJŠ
Hi, I use dev-python/matplotlib-1.4.3 and I suspect this is a recent regression in it. Can anybody reproduce this? $ pychecker test.py Processing module test (test.py)... warning: couldn't find real module for class class 'fftpack.error' (module name: fftpack) warning: couldn't find real

Re: [Matplotlib-users] Matplotlib eating memory

2013-10-14 Thread Martin MOKREJŠ
lists of lists with series like histogram and piechart do. I cannot find the thread but maybe you are more lucky. I even think that I already opened a bugreport/feature requested in the past for this. But maybe not. Martin Mike On 10/12/2013 12:57 PM, Martin MOKREJŠ wrote: Hi, so here

Re: [Matplotlib-users] Matplotlib eating memory

2013-10-12 Thread Martin MOKREJŠ
Hi, so here is some quick but working example. I added there are 2-3 functions (unused) as a bonus, you can easily call them from the main function using same API (except the piechart). I hope this shows what I lack in matplotlib - a general API so that I could easily switch form scatter plot

Re: [Matplotlib-users] Matplotlib eating memory

2013-10-10 Thread Martin MOKREJŠ
Benjamin Root wrote: On Thu, Oct 10, 2013 at 9:05 AM, Martin MOKREJŠ mmokr...@gmail.com mailto:mmokr...@gmail.com wrote: Hi, rendering some of my charts takes almost 50GB of RAM. I believe below is a stracktrace of one such situation when it already took 15GB. Would

Re: [Matplotlib-users] Matplotlib eating memory

2013-10-10 Thread Martin MOKREJŠ
objects. Same for legend stuff. Martin Mike On 10/10/2013 09:05 AM, Martin MOKREJŠ wrote: Hi, rendering some of my charts takes almost 50GB of RAM. I believe below is a stracktrace of one such situation when it already took 15GB. Would somebody comments on what is matplotlib doing

Re: [Matplotlib-users] Matplotlib eating memory

2013-10-10 Thread Martin MOKREJŠ
Benjamin Root wrote: On Thu, Oct 10, 2013 at 9:47 AM, Martin MOKREJŠ mmokr...@gmail.com mailto:mmokr...@gmail.com wrote: Benjamin Root wrote: On Thu, Oct 10, 2013 at 9:05 AM, Martin MOKREJŠ mmokr...@gmail.com mailto:mmokr...@gmail.com mailto:mmokr

Re: [Matplotlib-users] Matplotlib eating memory

2013-10-10 Thread Martin MOKREJŠ
Michael Droettboom wrote: On 10/10/2013 09:47 AM, Martin MOKREJŠ wrote: Benjamin Root wrote: On Thu, Oct 10, 2013 at 9:05 AM, Martin MOKREJŠ mmokr...@gmail.com mailto:mmokr...@gmail.com wrote: Hi, rendering some of my charts takes almost 50GB of RAM. I believe below

Re: [Matplotlib-users] Matplotlib eating memory

2013-10-10 Thread Martin MOKREJŠ
Hi Ben, thank you for your comments. Looks I will have a bad sleep tonight. :( Some quick answers below. Benjamin Root wrote: On Thu, Oct 10, 2013 at 10:21 AM, Michael Droettboom md...@stsci.edu mailto:md...@stsci.edu wrote: Thanks. This is much more helpful. What we

3.10.10: WARNING: at kernel/smp.c:181 generic_smp_call_function_single_interrupt+0x11c/0x130()

2013-09-10 Thread Martin MOKREJŠ
Hi, I got this stacktrace shortly after bootup. I am disabling the two hyper-threaded cores in my startup scripts so possibly that was the trigger, at least per earlier report from Fernando Soto on Jul 08 2013: https://lkml.org/lkml/2013/7/8/301 I don't see his name in this patch series

3.10.10: WARNING: at kernel/smp.c:181 generic_smp_call_function_single_interrupt+0x11c/0x130()

2013-09-10 Thread Martin MOKREJŠ
Hi, I got this stacktrace shortly after bootup. I am disabling the two hyper-threaded cores in my startup scripts so possibly that was the trigger, at least per earlier report from Fernando Soto on Jul 08 2013: https://lkml.org/lkml/2013/7/8/301 I don't see his name in this patch series

Re: [PATCH v3] usbcore: check usb device's state before sending a Set SEL control transfer

2013-09-04 Thread Martin MOKREJŠ
Hi Xenia, thank you. I tested this patch on 3.11 kernel and the messages don't appear anymore upon LPM-capable device disconnect (tested with ASMedia AS2105 devices). Not much to show here, there is just no error/warning related to LPM while handling these devices. Probably better test is with

Re: 3.10.9: kmemleak disables all CPUs except CPU0

2013-09-03 Thread Martin MOKREJŠ
Catalin Marinas wrote: > On Mon, Sep 02, 2013 at 04:51:17PM +0100, Martin MOKREJŠ wrote: >> Catalin Marinas wrote: >>> On Mon, Sep 02, 2013 at 04:44:52PM +0100, Max Filippov wrote: >>>> On Mon, Sep 2, 2013 at 7:31 PM, Catalin Marinas >>>> wrote: >

Re: 3.10.9: kmemleak disables all CPUs except CPU0

2013-09-03 Thread Martin MOKREJŠ
Catalin Marinas wrote: On Mon, Sep 02, 2013 at 04:51:17PM +0100, Martin MOKREJŠ wrote: Catalin Marinas wrote: On Mon, Sep 02, 2013 at 04:44:52PM +0100, Max Filippov wrote: On Mon, Sep 2, 2013 at 7:31 PM, Catalin Marinas catalin.mari...@arm.com wrote: On 31 August 2013 14:35, Martin

Re: 3.10.9: kmemleak disables all CPUs except CPU0

2013-09-02 Thread Martin MOKREJŠ
Catalin Marinas wrote: > On Mon, Sep 02, 2013 at 04:44:52PM +0100, Max Filippov wrote: >> On Mon, Sep 2, 2013 at 7:31 PM, Catalin Marinas >> wrote: >>> On 31 August 2013 14:35, Martin MOKREJŠ wrote: >>>> never realized that my CPUs are go

Re: 3.10.9: kmemleak disables all CPUs except CPU0

2013-09-02 Thread Martin MOKREJŠ
Catalin Marinas wrote: > On 31 August 2013 14:35, Martin MOKREJŠ wrote: >> never realized that my CPUs are gone if I compile into kernel kmemleak. >> Is that really the aim? >> >> CONFIG_HAVE_DEBUG_KMEMLEAK=y >> CONFIG_DEBUG_KMEMLEAK=y >> C

Re: 3.10.9: kmemleak disables all CPUs except CPU0

2013-09-02 Thread Martin MOKREJŠ
Catalin Marinas wrote: On 31 August 2013 14:35, Martin MOKREJŠ mmokr...@gmail.com wrote: never realized that my CPUs are gone if I compile into kernel kmemleak. Is that really the aim? CONFIG_HAVE_DEBUG_KMEMLEAK=y CONFIG_DEBUG_KMEMLEAK=y CONFIG_DEBUG_KMEMLEAK_EARLY_LOG_SIZE=400

Re: 3.10.9: kmemleak disables all CPUs except CPU0

2013-09-02 Thread Martin MOKREJŠ
Catalin Marinas wrote: On Mon, Sep 02, 2013 at 04:44:52PM +0100, Max Filippov wrote: On Mon, Sep 2, 2013 at 7:31 PM, Catalin Marinas catalin.mari...@arm.com wrote: On 31 August 2013 14:35, Martin MOKREJŠ mmokr...@gmail.com wrote: never realized that my CPUs are gone if I compile

Emulating ECC RAM in kernel or mirroring RAM to exclude HW issues

2013-09-01 Thread Martin MOKREJŠ
Hi, I am trying to find out why some applications crash on my laptop. I mostly use python and have configured it via configure --with-pydebug so that is wraps memory allocated regions with 0xfb. That helps to realize something overwrote that memory region. So far, it twice reported 0xfb to 0xfa

Emulating ECC RAM in kernel or mirroring RAM to exclude HW issues

2013-09-01 Thread Martin MOKREJŠ
Hi, I am trying to find out why some applications crash on my laptop. I mostly use python and have configured it via configure --with-pydebug so that is wraps memory allocated regions with 0xfb. That helps to realize something overwrote that memory region. So far, it twice reported 0xfb to 0xfa

Re: [PATCH linux-next] Prevent a coredump with a large vm_map_count from Oopsing

2013-08-31 Thread Martin MOKREJŠ
Dan Aloni wrote: > On Sat, Aug 31, 2013 at 03:38:33PM +0200, Martin MOKREJŠ wrote: >> Hi Dan, >> thank you for your work on my issue. I would like to test it on 3.10.9 >> where >> I faced the problem initially. > > Sure, see the attached patch for 3.10.9. Than

Re: [PATCH linux-next] Prevent a coredump with a large vm_map_count from Oopsing

2013-08-31 Thread Martin MOKREJŠ
Hi Dan, thank you for your work on my issue. I would like to test it on 3.10.9 where I faced the problem initially. linux-3.10.9 # patch -p1 < ../patches/vm_map_count.patch patching file fs/binfmt_elf.c Hunk #1 succeeded at 1415 (offset -14 lines). Hunk #2 succeeded at 1430 (offset -14 lines).

Re: [PATCH linux-next] Prevent a coredump with a large vm_map_count from Oopsing

2013-08-31 Thread Martin MOKREJŠ
Hi Dan, thank you for your work on my issue. I would like to test it on 3.10.9 where I faced the problem initially. linux-3.10.9 # patch -p1 ../patches/vm_map_count.patch patching file fs/binfmt_elf.c Hunk #1 succeeded at 1415 (offset -14 lines). Hunk #2 succeeded at 1430 (offset -14 lines).

Re: [PATCH linux-next] Prevent a coredump with a large vm_map_count from Oopsing

2013-08-31 Thread Martin MOKREJŠ
Dan Aloni wrote: On Sat, Aug 31, 2013 at 03:38:33PM +0200, Martin MOKREJŠ wrote: Hi Dan, thank you for your work on my issue. I would like to test it on 3.10.9 where I faced the problem initially. Sure, see the attached patch for 3.10.9. Thanks, it works for my case. You can add my

Re: [PATCH 1/3] usbcore: set lpm_capable field for LPM capable root hubs

2013-08-31 Thread Martin MOKREJŠ
Martin MOKREJŠ wrote: Hi Xenia, I tried these 3 patches and ... I will rather leave it up to you to decide if everything went right. Attached is a diff of dmesg from unpatched and patched 3.10.9 kernel. USB3 devices were connected before cold bootup, sadly in latter test the ordering

Re: 3.10.9: EXT4-fs (sdb1): delayed block allocation failed for inode 163315715 at logical offset 1 with max blocks 2 with error -5

2013-08-30 Thread Martin MOKREJŠ
Theodore Ts'o wrote: > Your SATA disk had enough errors that the ATA link was completely > reset, and the device was detached and then reattached. As far as > kernel is concerned, it's a new device. Later on I rebooted and ran smarctl: # smartctl --test=long /dev/sdb As of now after two days

Re: 3.10.9: EXT4-fs (sdb1): delayed block allocation failed for inode 163315715 at logical offset 1 with max blocks 2 with error -5

2013-08-30 Thread Martin MOKREJŠ
Theodore Ts'o wrote: Your SATA disk had enough errors that the ATA link was completely reset, and the device was detached and then reattached. As far as kernel is concerned, it's a new device. Later on I rebooted and ran smarctl: # smartctl --test=long /dev/sdb As of now after two days I

Re: 3.10.9: Oops at elf_core_dump()

2013-08-29 Thread Martin MOKREJŠ
15 0f 1f 44 00 00 48 83 c0 01 0f b6 10 f6 82 40 c6 84 81 20 75 f0 5d c3 66 0f 1f 44 00 00 31 c0 <80> 3f 00 55 48 89 e5 74 11 48 89 f8 66 90 48 83 c0 01 80 38 00 [112568.011042] RIP [] strlen+0x2/0x20 [112568.011748] RSP [112568.012445] CR2: 00000000 [112568.013155]

Re: 3.10.9: Oops at elf_core_dump()

2013-08-29 Thread Martin MOKREJŠ
. Martin Greg KH wrote: > On Thu, Aug 29, 2013 at 11:46:18PM +0200, Martin MOKREJŠ wrote: >> Hi, >> I just got this stacktrace. Not sure whom to send it, poking throu >> MAINTAINERS >> file and looking for ELF gave me nothing. ;-) >> >> [105670.434336] BU

3.10.9: Oops at elf_core_dump()

2013-08-29 Thread Martin MOKREJŠ
Hi, I just got this stacktrace. Not sure whom to send it, poking throu MAINTAINERS file and looking for ELF gave me nothing. ;-) [105670.434336] BUG: unable to handle kernel NULL pointer dereference at (null) [105670.434366] IP: [] strlen+0x2/0x20 [105670.434385] PGD 18c8e5067 PUD

3.10.9: Oops at elf_core_dump()

2013-08-29 Thread Martin MOKREJŠ
Hi, I just got this stacktrace. Not sure whom to send it, poking throu MAINTAINERS file and looking for ELF gave me nothing. ;-) [105670.434336] BUG: unable to handle kernel NULL pointer dereference at (null) [105670.434366] IP: [812f7b42] strlen+0x2/0x20 [105670.434385] PGD

Re: 3.10.9: Oops at elf_core_dump()

2013-08-29 Thread Martin MOKREJŠ
what to say more. I just crashed teh kernel but except the Ooops it works so far. The core filesize is zero. Martin Greg KH wrote: On Thu, Aug 29, 2013 at 11:46:18PM +0200, Martin MOKREJŠ wrote: Hi, I just got this stacktrace. Not sure whom to send it, poking throu MAINTAINERS file

Re: 3.10.9: Oops at elf_core_dump()

2013-08-29 Thread Martin MOKREJŠ
9d67aee555e92d76 ]--- Martin MOKREJŠ wrote: Got it for the first time. Actually, am doing something really unusual (http://bugs.python.org/issue18843). Am looking for an answer why I suffer memory corruption in python applicatuons. So I installed DUMA from http://duma.sourceforge.net

Re: [RFC v2] usbcore: compare and release one bos descriptor in usb_reset_and_verify_device()

2013-08-29 Thread Martin MOKREJŠ
Hi Xenia, thank you for the patch. I tried to reproduce the error with patched 3.10.9 kernel but it seems the kmemleak is indeed gone. Provided I get only these lines logged which used to be followed by kmemleak findings I believe the original fixed: [15885.206032] usb 4-2.1: reset SuperSpeed

Include parent hub number in current warning message Parent hub missing LPM exit latency info

2013-08-29 Thread Martin MOKREJŠ
Hi Xenia, thank you, how about inclusion of the parent hub number in the following message (as of now): Parent hub missing LPM exit latency info. Power management will be impacted. I find it awkward to later on run manually lspci/lsusb to find what is the parent. I think I do NOT get

Re: Include parent hub number in current warning message Parent hub missing LPM exit latency info

2013-08-29 Thread Martin MOKREJŠ
controller. Funny! I would say this is linux-pci issue but provided XHCI_HCD is special and manages interrupts somewhat on its own you may look into that first before we ask linux-pci developers. Martin MOKREJŠ wrote: Hi Xenia, thank you, how about inclusion of the parent hub number

Re: Include parent hub number in current warning message Parent hub missing LPM exit latency info

2013-08-29 Thread Martin MOKREJŠ
Alan Stern wrote: On Thu, 29 Aug 2013, Martin MOKREJŠ wrote: Alan Stern wrote: On Thu, 29 Aug 2013, Martin MOKREJŠ wrote: Hi Xenia, thank you, how about inclusion of the parent hub number in the following message (as of now): Parent hub missing LPM exit latency info. Power

Re: Include parent hub number in current warning message Parent hub missing LPM exit latency info

2013-08-29 Thread Martin MOKREJŠ
Alan Stern wrote: On Thu, 29 Aug 2013, Martin MOKREJŠ wrote: Since this device is 4-2, the parent hub is usb4. Actually, even if that would be a another USB HUB and not a PCI device (root hub), I would be happy if it extracted something like: Bus 004 Device 006: ID 2109:0810

Re: 3.10.9: EXT4-fs (sdb1): delayed block allocation failed for inode 163315715 at logical offset 1 with max blocks 2 with error -5

2013-08-28 Thread Martin MOKREJŠ
to a file filled up some kernel buffers (because could not write to /mnt/external) the ext4 driver choked? # cat /proc/sys/vm/laptop_mode 0 # Have app-laptop/laptop-mode-tools-1.63-r2 on Gentoo Linux. Thank you, Martin Martin MOKREJŠ wrote: > Hi, > I have been running two instances of va

Re: 3.10.9: EXT4-fs (sdb1): delayed block allocation failed for inode 163315715 at logical offset 1 with max blocks 2 with error -5

2013-08-28 Thread Martin MOKREJŠ
to a file filled up some kernel buffers (because could not write to /mnt/external) the ext4 driver choked? # cat /proc/sys/vm/laptop_mode 0 # Have app-laptop/laptop-mode-tools-1.63-r2 on Gentoo Linux. Thank you, Martin Martin MOKREJŠ wrote: Hi, I have been running two instances of valgrind on some

[Bug 60746] 3.10.4: xhci_hcd 0000:0b:00.0: Refused to change power state, currently in D3

2013-08-15 Thread Martin MOKREJŠ
Hi, I was asked by Greg to post this to linux-usb. Please Cc: linux-pci or linux-acpi if you think they should take of that. - Hi, I reported in the past all kinds of PCI/ACPI-related issues with this Dell Vostro 3550 laptop, in respect to USB also problems with XHCI ports

Re: [openssl.org #2268] AutoReply: openssl-0.9.8n: Organization Name value may not contain comma

2010-06-08 Thread Martin MOKREJŠ via RT
Hi, I just re-tried this again hoping to show you what fails in openssl: Hi, I am trying to generate some client certificates for openvpn and I found openssl breaks with a cryptic message TXT_DB error number 2 if I enter a _comma_ into the Organization Name string. First of all I do

Re: [openssl.org #2268] openssl-0.9.8n: Organization Name value may not contain comma

2010-05-20 Thread Martin MOKREJŠ via RT
Stephen Henson via RT wrote: [mmokr...@ribosome.natur.cuni.cz - Mon May 17 14:42:14 2010]: Hi, I am trying to generate some client certificates for openvpn and I found openssl breaks with a cryptic message TXT_DB error number 2 if I enter a _comma_ into the Organization Name string. First

Bug#337496: basilisk2: Always crashes when starting up (home-built version does too)

2009-10-17 Thread Martin MOKREJŠ
I am a Gentoo Linux user (x86 32bit) and for me BasiliskII crashes when I use radeon DRI driver under X. If I use VESA it works fine. I also see the errors related to the floppy drive, actually I always here the computer seeking them on startup of Basilisk.

Bug#337496: basilisk2: Always crashes when starting up (home-built version does too)

2009-10-17 Thread Martin MOKREJŠ
I am a Gentoo Linux user (x86 32bit) and for me BasiliskII crashes when I use radeon DRI driver under X. If I use VESA it works fine. I also see the errors related to the floppy drive, actually I always here the computer seeking them on startup of Basilisk.

Re: [BiO BB] Efficient way to retrieve full length cDNA sequences from GenBank?

2009-04-14 Thread Martin MOKREJŠ
Hi Dale, forget about GenBank, go for http://h-invitational.jp/ which collected the full length cDNA data for you already. martin dale richardson wrote: Hello All, Please forgive me if this post comes off as inexperienced, but if any of you have the time I would like to hear your

Re: Auto-repeat with evdev 2.2.0

2009-03-11 Thread Martin MOKREJŠ
Confirming this issue with xf86-input-evdev-2.2.0 and xorg-server-1.5.3-r3 on Gentoo linux ~x86. I used to have xf86-input-evdev-2.1.3 before. I haven't tested the patch - yet. M. Peter Hutterer wrote: On Mon, Mar 09, 2009 at 10:15:50PM -0400, Marty Jack wrote: Dropping evdev 2.2.0 onto a

Re: a pledge for updating/enhancing xsm

2009-03-10 Thread Martin MOKREJŠ
Dennis Heuer wrote: On Tue, 10 Mar 2009 09:45:24 +0100 Martin MOKREJŠ mmokr...@ribosome.natur.cuni.cz wrote: How about fvwm2? ;-) m. actually, i don't get the clever point you make 8-( i ask for enhancements in xsm and you target me to a window manager. but openbox behaves fine

Re: [Bug 19947] xkbcomp-1.0.5: Group width mismatch between key and type

2009-02-23 Thread Martin MOKREJŠ
Hi Peter, thanks for excellent explanations. More below. Peter Hutterer wrote: (**) Option xkb_rules evdev (**) AT Translated Set 2 keyboard: xkb_rules: evdev (**) Option xkb_model evdev (**) AT Translated Set 2 keyboard: xkb_model: evdev (**) Option xkb_layout us,cz (**) AT Translated

Re: [Bug 19947] xkbcomp-1.0.5: Group width mismatch between key and type

2009-02-23 Thread Martin MOKREJŠ
Martin MOKREJŠ wrote: Forgot to add that the [alt]+[shift] switch works with the setup I have now. Only I suspect that [shift]+twice pressing [=] on the US keyboard layout followed by pressing [u] should generate ů instead of ˇu. But, the character is anyway mapped over the [;] character of US

Re: [Bug 19947] xkbcomp-1.0.5: Group width mismatch between key and type

2009-02-22 Thread Martin MOKREJŠ
Dan Nicholson wrote: On Sat, Feb 21, 2009 at 11:15 AM, Martin MOKREJŠ mmokr...@ribosome.natur.cuni.cz wrote: I don't know the internals of xorg server, so ... I am puzzled why the /usr/bin/xkbcomp is being called twice, as logged in Xorg.0.log. I even cannot find the file to existing for teh

Re: vim71 on Solaris 2.6 with OpenWindows 3.5: make: Fatal error in reader: Makefile, line 295: Extra `:', `::', or `:=' on dependency line

2008-04-10 Thread Martin MOKREJŠ
Bram Moolenaar wrote: mmokrejs wrote: while running 'make install' I get the following on Solaris 2.6 machine: cut /bin/sh ./mkinstalldirs /usr/local/share/vim/vim71/compiler mkdir /usr/local/share/vim/vim71/compiler chmod 755 /usr/local/share/vim/vim71/compiler /bin/sh

Re: vim71 on Solaris 2.6 with OpenWindows 3.5: make: Fatal error in reader: Makefile, line 295: Extra `:', `::', or `:=' on dependency line

2008-04-09 Thread Martin MOKREJŠ
Hi, Bram Moolenaar wrote: mmokrejs wrote: while running 'make install' I get the following on Solaris 2.6 machine: cut /bin/sh ./mkinstalldirs /usr/local/share/vim/vim71/compiler mkdir /usr/local/share/vim/vim71/compiler chmod 755 /usr/local/share/vim/vim71/compiler /bin/sh

How to interpret the automaton output during gcc bootstrap and -mcpu=arm926ej-s or --with-cpu=arm926ejs

2007-12-15 Thread Martin MOKREJŠ
Hi, I am trying to build gcc-4.2.2 for this CPU and am surprised or badly *interpreting* that `arm1026ejs' code is maybe faster than `arm926ejs'? I tried to find this in the Documentation and by Google but no luck. $ cat /proc/cpuinfo Processor : ARM926EJ-Sid(wb) rev 5 (v5l) BogoMIPS

Wget 1.10.2 does not continue download when file in a subdirectory

2007-07-28 Thread Martin MOKREJŠ
Hi, I think the following happens due to a bug in wget unable to look into a subdirectory for the file to be restarted in download: $ wget -Nr -nH --no-proxy ftp://ftp.ncbi.nlm.nih.gov/genbank/daily-nc/nc*flat.gz ... --04:35:16-- ftp://ftp.ncbi.nlm.nih.gov/genbank/daily-nc/nc0727.flat.gz

e1000 in 2.6.21.2 and even older, like 2.6.13: eth0 does not exist but eth1 does

2007-05-24 Thread Martin MOKREJŠ
Hi, today I had to reinstall some machine because the xfs filesystem was broken, because under heavy load I got kernel panic complaining that some internal kernel structure are broken so the filesystem was unmounted. Sorry, I had no time to take a snapshot. So I recreated the filesystem and

e1000 in 2.6.21.2 and even older, like 2.6.13: eth0 does not exist but eth1 does

2007-05-24 Thread Martin MOKREJŠ
Hi, today I had to reinstall some machine because the xfs filesystem was broken, because under heavy load I got kernel panic complaining that some internal kernel structure are broken so the filesystem was unmounted. Sorry, I had no time to take a snapshot. So I recreated the filesystem and

grub-0.97 reports Error 18 while 'Smart Boot Manager' can load WinXP past cyl 1023

2007-02-12 Thread Martin MOKREJŠ
Hi, I have upgraded my internal ATA drive and now the partitions are larger. I have: (output from fdisk) Disk /dev/hda: 160.0 GB, 160041885696 bytes 255 heads, 63 sectors/track, 19457 cylinders Units = cylinders of 16065 * 512 = 8225280 bytes Device Boot Start End Blocks

2.6.19.1: kernel BUG at mm/slab.c:2911!

2007-01-30 Thread Martin MOKREJŠ
Hi, is this a known issue? Should I bother to upgrade to 2.6.19.2 if it contains the fix? Thank you any help. It might be related to NFS. The machine in question is NFSv3 client, udp. And used for computations. The process which died is from torque cluster management package. Please Cc: me

2.6.19.1: kernel BUG at mm/slab.c:2911!

2007-01-30 Thread Martin MOKREJŠ
Hi, is this a known issue? Should I bother to upgrade to 2.6.19.2 if it contains the fix? Thank you any help. It might be related to NFS. The machine in question is NFSv3 client, udp. And used for computations. The process which died is from torque cluster management package. Please Cc: me

Regression: spurious 8259A interrupt: IRQ7 appears in 2.6.19-rc6-git10

2006-11-28 Thread Martin MOKREJŠ
Hi, I have just tested for fun the upcoming release candidate and have found the following difference with a 'spurious 8259A interrupt: IRQ7' message, possibly triggered by the --- linux-2.6.19-rc5.txt2006-11-28 19:23:54.145722821 +0100 +++ linux-2.6.19-rc6-git10.txt 2006-11-28

XFS: possible recursive locking detected in 2.6.18 to 2.6.19-rc6-git10 but not 2.6.17.11

2006-11-28 Thread Martin MOKREJŠ
Hi, I have a looong time opened a bugreport on XFS at http://bugzilla.kernel.org/show_bug.cgi?id=7287 and I see it still appear in my kernel output during bootup. I guess this is one of the relatively new kernel self-testing features introduced recently. I just wanted to let you know about that.

XFS: possible recursive locking detected in 2.6.18 to 2.6.19-rc6-git10 but not 2.6.17.11

2006-11-28 Thread Martin MOKREJŠ
Hi, I have a looong time opened a bugreport on XFS at http://bugzilla.kernel.org/show_bug.cgi?id=7287 and I see it still appear in my kernel output during bootup. I guess this is one of the relatively new kernel self-testing features introduced recently. I just wanted to let you know about that.

Regression: spurious 8259A interrupt: IRQ7 appears in 2.6.19-rc6-git10

2006-11-28 Thread Martin MOKREJŠ
Hi, I have just tested for fun the upcoming release candidate and have found the following difference with a 'spurious 8259A interrupt: IRQ7' message, possibly triggered by the --- linux-2.6.19-rc5.txt2006-11-28 19:23:54.145722821 +0100 +++ linux-2.6.19-rc6-git10.txt 2006-11-28

Re: [OpenAFS-devel] is multihoming supported under openafs these days?

2006-03-07 Thread Martin MOKREJŠ
Hi, I am just following an old discussion on this list and have the following problem on Gentoo linux with a server having 3 net interfaces. AFS tries to use all of them. I gathered from the discussion it is difficult to set up afs use different interfaces for different purposes. OK, let's

Re: [OpenAFS-devel] aklog and heimdal

2006-02-17 Thread Martin MOKREJŠ
with Heimdal, so I don't think it really matters. -derek From: Love [EMAIL PROTECTED] Martin MOKREJŠ [EMAIL PROTECTED] writes: Hi Love, doesn't this work. I think this used to work, but ktutil manpage doesn't mention AFSKEYFILE at all. Should be updated. I'll deal with this later. How am I

[OpenAFS-devel] cannot compile current cvs HEAD on linux

2005-10-10 Thread Martin MOKREJŠ
Hi, would someone please fix the following problem on linux 2.6? Thanks. CC [M] /scratch/openafs/src/libafs/MODLOAD-2.6.13.2-MP/afs_callback.o /scratch/openafs/src/libafs/MODLOAD-2.6.13.2-MP/afs_callback.c: In function `recurse_dcache_parent':

[OpenAFS-devel] Cannot start afsd with 30GB cache

2005-10-10 Thread Martin MOKREJŠ
Hi, I somewhat cannot start afsd on linux-2.6.13.2 kernel with 30GB large cache. The max what works is about 3.6GB as set in the cacheinfo file. I use 1.4.0-rc6 at the moment on this host with SMP/HIGHMEM. # /usr/sbin/afsd -fakestat -stat 300 -dcache 100 -daemons 2 -volumes 50 -chunksize 20

Re: [OpenAFS-devel] Cannot start afsd with 30GB cache

2005-10-10 Thread Martin MOKREJŠ
Hi Jeff, thanks for quick answers. Jeffrey Hutzelman wrote: On Monday, October 10, 2005 05:12:35 PM +0200 Martin MOKREJ© [EMAIL PROTECTED] wrote: afsd: Can't mount AFS on /afs(2) errno 2 is ENOENT. Does /afs exist? Hmm, it did but somehow it disappeared. I am testing partly the

Re: [OpenAFS-devel] afsd-1.4.0-rc3 problems

2005-09-23 Thread Martin MOKREJŠ
chas williams - CONTRACTOR wrote: In message [EMAIL PROTECTED],=?windows-1252?Q?Martin_MOKREJ=8A?= writes: I have problem to get running a huge cache on an SMP linux box. The same cache size works fine on non-SMP boxes using same ext2 filesystem. On the problematic host, I can start using

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