On Thu, Feb 12, 2009 at 4:55 PM, Mark Robinson wrote:
>
> Hi Sun.
>
> One of the handy features of aroma.affymetrix is that it pulls a lot
> of information from the directories in which files reside (e.g.
> platform, dataset name, etc).
>
> If you are on unix/mac osx, you can use symbolic links f
Hi Sun.
One of the handy features of aroma.affymetrix is that it pulls a lot
of information from the directories in which files reside (e.g.
platform, dataset name, etc).
If you are on unix/mac osx, you can use symbolic links for this.
For example, everything in your ./rawData/MYPLATFORM/MY
I am wondering whether aroma-affymetrix can read in CEL files that are
scattered in several directories.
For example, the user may want to provide a text file specifying the
full paths of CEL files.
The reason is that I want to process these CEL files together, however
I don't want to copy them to
Dear Dr. *Bengtsson:*
**
**
*I am wondering whether aroma-affymetrix can read in CEL files that are
scattered in several directories.*
*For example, the user may want to provide a text file specifying the full
paths of CEL files.*
*The reason is that I want to process these CEL files together, howe
Hi All,
One obvious quality criteria of the SNP array is weather the probe
intensity is concentrated around the estimated copy number. On the
plots of the chromosome explorer it is the wideness of the column of
green dots around the black lines.
Therefore I am wondering if there is a functio
Hi,
I searched email archive, and found two related topics, which
tell us to use fit() to retrieve the contents in xdr files, which I
did:
fit.results<-fit(cbs,verbose=verbose).
But, could you please tell me how to write the fit.results in
text format so that the other unix
Dear Henrik,
I am trying to export the CN ratios for a few thousands Affy500K.
So far, I am using the extractRawCopyNumbers function which works but
is pretty slow (I am on a shared-network disc...).
I was wondering if you had any documentation somewhere on how you
combine the NSP and STY chips?
