Hi
I am playing around again with multiple annotation "tracks" in Artemis latest
version locally...
I managed to get BLAST results in the annotation as well as other EMBL FT.
I wondered is it possible to get for let's say a limited BLAST to 4 matches
each entry, to display all those 4 as featur
Hi Alex
I am not sure of the best way to limit the number of hits to an ORF but you
may be interested in a new view which is in development at the moment in
Artemis. It displays overlapped features in a 'Feature Stack View'.
Currently this is in the development version of Artemis,
http://www.sange
Tim,
thanks for the rapid reply!
I will have a look at the dev version. Sounds interesting.
Regarding the blast tracks. What I do is I generate ORFs using gmHMM or
prodigal... and blast those in one go limiting 4 hits each. I than postprocess
these files into embl annotation files using the ORF p
Tim,
which FeaTure key would be best to use when wanting hyperlinked db refs? Is
there some convention?
/db_xref="GI:somenumber"?
Alex
Van: Bossers, Alex
Verzonden: woensdag 11 april 2012 22:31
To: Tim Carver; artemis-users@sanger.ac.uk
Onderwerp: RE: Ar
Hi Alex
You can use db_xref. However Artemis should recognise hyperlinks in any
qualifier e.g. /note.
Cheers
Tim
On 4/12/12 9:15 PM, "Bossers, Alex" wrote:
> Tim,
>
> which FeaTure key would be best to use when wanting hyperlinked db refs? Is
> there some convention?
> /db_xref="GI:somenumber
Hi Alex
No that isn't the intended behaviour. This view is still in development so
thank you for the feedback. I have changed the code so that all frame line
features (not just CDS features) should now be separated out. So you should
hopefully then see your 4 BLASTCDS features. This is now availab
