[base] Plugin configuration (still some pb)

2006-11-08 Thread Emmanuel Courcelle
file we have been testing on the "Rgn R" column should be column number 32 and the mapping to use \32\. hum... rather 33, I think (it was 33 in Base 1.2). Does the column numbers start at 0 or at 1 ? If they start at 1 it is 33 Sorry to bother you, but I still have a problem (not

Re: [base] Plugin configuration (still some pb)

2006-11-08 Thread Nicklas Nordborg
Emmanuel Courcelle wrote: file we have been testing on the Rgn R² column should be column number 32 and the mapping to use \32\. hum... rather 33, I think (it was 33 in Base 1.2). Does the column numbers start at 0 or at 1 ? As I wrote in the previous mail: The columns are

[base] file storage system question

2006-11-08 Thread Keith Ching
is there a way to link the original source file to the raw bioassay into which it was imported? say i have an experiment which contains 20 raw bioassays. what would be the best way to be able to list / retrieve the original data files that were used to create the raw bioassays? on another note,

[base] comment on ticket 334 Project default items

2006-11-08 Thread Keith Ching
when entering in a lot of arrays performed on some date in the past, you have to change the creation date of the sample, extract, labeled extract, hybridization, etc.. for each one from the default creation date. i could enter them faster if i could set the default date once somewhere. thanks,

[base] BASE 2 API: creating subdirectories in users' home directories

2006-11-08 Thread Micha Bayer
Hi again, Sorry for the barrage of messages from me recently but it's obviously early days for BASE 2 and whenever I have got stuck recently there hasn't been any existing messages to fall back on. I guess this will improve over time I am trying to write some code to do a combined zip file

[base] how to import reporters ?

2006-11-08 Thread Emmanuel Courcelle
As I wrote in the previous mail: The columns are numbered from 0 so the file we have been testing on the Rgn R² column should be column number 32 and the mapping to use \32\. I counted twice, but of course you should check that it is correct. Sorry, you're right You have to

Re: [base] how to import reporters ?

2006-11-08 Thread Jari Häkkinen
The reporter import button does appear because there is no plug-in configured for import of reporters. You need to create a configuration for the Reporter importer plug-in. We have compiled a getting started document that outlines the first steps with BASE 2,

Re: [base] file storage system question

2006-11-08 Thread Keith Ching
it seems you can make a String annotation type and attach it to raw bioassay and fill it with a href=javascript:Main.downloadFile('34537569891fa9bf', 142) img border=0 class=icon title=Download the contents of this file src=/base2/images/download.gif/a which will produce a link to the

Re: [base] file storage system question

2006-11-08 Thread Nicklas Nordborg
Keith Ching wrote: it seems you can make a String annotation type and attach it to raw bioassay and fill it with a href=javascript:Main.downloadFile('34537569891fa9bf', 142) img border=0 class=icon title=Download the contents of this file src=/base2/images/download.gif/a which will