We are happy to announce the release of a new version of the Tab2Mage
import and Tab2Mage export plugins available for download from the
base2plugin
website:
Import: http://baseplugins.thep.lu.se/wiki/uk.ac.ebi.Tab2MageImporter
Export:
vegard nygaard wrote:
Dominic wrote:
Quick question, are using the AnnotationTypeCvImporter plugin contained
in the Tab2MageImporter.jar file?
No. I installed and tested the AnnotationTypeCvImporter with its own jar
file and assumed it was the same.
I now changed to use the
Jari Häkkinen wrote:
Just for your information:
Dominic Oyeniran wrote:
This is a known issue and has been documented here:
http://lev.thep.lu.se/trac/baseplugins/browser/trunk/uk/ac/ebi/Tab2MageImporter/README.txt.
Please scroll to the usage section right after the installation section
vegard nygaard wrote:
Hi.
This is for Dominic I guess.
The last error I reported yesterday was from my own shortcutting and is
fixed. (I had not yet made a design).
Today I got an error when the plug-in tried to use the
AnnotationTypeCvImporter.
BASE error message:
IMPORT FAILS: The
Hi Micha,
Micha Bayer wrote:
Hi Dominic,
We are trying to export our first experiment for real so we can submit
it to ArrayExpress, and initially it looked like everything had worked
okay. But now we have found an error with the annotation that I wanted
to ask you about.
Our experiment
Nicklas Nordborg wrote:
Dominic Oyeniran wrote:
Hi Micha,
Micha Bayer wrote:
Hi Dominic,
We are trying to export our first experiment for real so we can submit
it to ArrayExpress, and initially it looked like everything had worked
okay. But now we have found an error with the annotation
is :
http://lev.thep.lu.se/trac/baseplugins/browser/trunk/uk/ac/ebi/Tab2MageImporter/README.txt.
Just an information for other interested users too.
Thanks,
¬Dominic
Bob MacCallum wrote:
Dominic Oyeniran writes:
vegard nygaard wrote:
I am trying out the Tab2Mage importer. When
And it is also linked from
http://lev.thep.lu.se/trac/baseplugins/wiki/uk.ac.ebi.Tab2MageImporter
But the readme file is not very precise about this problem, it advices me
not to use root. I disregarded that advice :(. If it will only run as a
non-root user with a limited quota, that should
Nicklas Nordborg wrote:
Dominic Oyeniran wrote:
I am experiencing the problem with deletion of items. See the exception
below.
Description: When you start deleting from the trash can either with
delete permanently or empty trash, the process dialog comes up but never
finishes and throws
Hi all,
Sorry everyone for my late response or contribution, I have been away.
I hope this short email will address some of the issues raised on the
tab2mage importer
Owing to the fact that the importer supports only affymetrix, genepix
and agilent platforms, I reckon interested users can
Hi James,
Option 2 on that ticket (http://base.thep.lu.se/ticket/682) works quite
well for me. Especially if your application/installation is not
particularly gaining any substantial features of mysql 5.0.27. So
migrating to a lower Mysql version should be ok. Do remember to backup
your data
Hi Bob
http://base.thep.lu.se/chrome/site/doc/html/userdoc/analysis/experiments_analysis.experiments.html#experiments_analysis.magexport
Dumb question: An Annotation Type such as Age(hours) or body mass(kg) when
applied to a biosource will be exported as a BioMaterialCharacteristic, right?
Hi Micha,
Nice work.
I tested the batch import today, on an affy experiment and I got the ff
exception:
=
===NEW BATCH IMPORT =
=
zn =HG-U133A.cdf
experiment: Experiment[id=5; name=Batch Importer
Hi,
public class ZipFileImporter extends AbstractPlugin implements
InteractivePlugin, AutoDetectingImporter {
private static final SetGuiContext guiContexts =
Collections.singleton(new GuiContext(Item.EXPERIMENT,
GuiContext.Type.ITEM));
then I'll get an import tab
-Original Message-
From: [EMAIL PROTECTED]
[mailto:[EMAIL PROTECTED] On Behalf Of Micha Bayer
Hi Micha,
I have just finished writing one. The user uploads a zip file, a new
directory is created in the user's raw data directory (with the same name
as the zip file) and the files are
Hi,
Since you are running the demo installation, your privileges may have been
limited.
I can unlink affy array design/ raw files association on my installation.
Note: I have admin rights.
Regards,
Dominic
-Original Message-
From: [EMAIL PROTECTED]
[mailto:[EMAIL PROTECTED] On Behalf
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