Hi Hervé,
Thank you! You saved me.
Best!
Your sincerely,
Jianhong Ou
> On Apr 24, 2020, at 5:59 PM, Hervé Pagès wrote:
>
> Hi Jianhong,
>
> I just updated R from R 4.0 alpha to the final R 4.0.0 on machv2 and the good
> news is that I no longer get a TIMEOUT with this new R:
>
> machv2:m
LOL
On 4/24/20 15:00, Jianhong Ou, Ph.D. wrote:
Hi Hervé,
Thank you! You saved me.
Best!
Your sincerely,
Jianhong Ou
On Apr 24, 2020, at 5:59 PM, Hervé Pagès wrote:
Hi Jianhong,
I just updated R from R 4.0 alpha to the final R 4.0.0 on machv2 and the good
news is that I no longer get
Hi Jianhong,
I just updated R from R 4.0 alpha to the final R 4.0.0 on machv2 and the
good news is that I no longer get a TIMEOUT with this new R:
machv2:meat biocbuild$ time R CMD build motifStack
* checking for file ‘motifStack/DESCRIPTION’ ... OK
* preparing ‘motifStack’:
* checking DESCRIP
Hi Herve,
Thank you for your help.
Jianhong.
On 4/17/20, 4:14 PM, "Hervé Pagès" wrote:
For some reasons the generation of the plots in the vignette is VERY
slow on machv2. 'R CMD build' actually completed... after 6h! This is
still under investigation.
Best,
H.
Hi Stefano,
Thank you for your share.
Jianhong.
From: Stefano de Pretis
Date: Friday, April 17, 2020 at 3:18 PM
To: "Jianhong Ou, Ph.D."
Cc: "bioc-devel@r-project.org"
Subject: Re: [Bioc-devel] Got timeout for machv2 BUILD
HI,
We solved a similar issue for the INSPEcT
For some reasons the generation of the plots in the vignette is VERY
slow on machv2. 'R CMD build' actually completed... after 6h! This is
still under investigation.
Best,
H.
On 4/17/20 12:11, Jianhong Ou, Ph.D. wrote:
Hi,
I got timeout for my package motifStack in machv2. But I don't know
HI,
We solved a similar issue for the INSPEcT package avoiding the
parallelization in the computation of examples and vignettes. In our case
it caused the timeout in the Windows environment.
Best,
Stefano
Il giorno ven 17 apr 2020 alle 21:11 Jianhong Ou, Ph.D. <
jianhong...@duke.edu> ha scritto:
Hi,
I got timeout for my package motifStack in machv2. But I don't know what cuased
the issue.
Any help would be greatly appreciated.
Jianhong.
From: Jianhong Ou, Ph.D.
Sent: Wednesday, April 15, 2020 7:53 AM
To: bioc-devel@r-project.org
Subject: Got timeout fo
Hi,
Hope you are doing well.
I got timeout for my package motifStack in machv2. The ellapsedTime is 2403.0
seconds while in tokay2 is 82.1 seconds and in malbec2 is 126.1 seconds. I have
limited information how to debug.
Could you share your suggestion? Thank you.
Yours Sincerely,
Jianhong
