I see, so it seems to be an issue of build failures of packages and not of
docker itself.
Thanks again for the help!
Best,
Reto
‐‐‐ Original Message ‐‐‐
On Tuesday, March 9, 2021 6:18 PM, Vincent Carey
wrote:
> note that diffcyt does not currently build at
> https://bioconductor.org/c
note that diffcyt does not currently build at
https://bioconductor.org/checkResults/3.13/bioc-LATEST/ -- its errors need
to be
repaired for your build to succeed
On Tue, Mar 9, 2021 at 11:07 AM Reto Gerber via Bioc-devel <
bioc-devel@r-project.org> wrote:
> Dear all,
>
> I would like to reprodu
Hi,
There are a few things here,
1. You don't have to install BiocManager again, it's pre-installed in the
docker image we provide 'bioconductor_docker'.
2. You also don't need to use install2.r script, just list all the packages you
need in the BiocManager::install command.
3. I don't unde
Dear all,
I would like to reproduce a build error (on Bioc devel) using docker. The issue
is that the docker image fails to build. I use the following Dockerfile:
> FROM bioconductor/bioconductor_docker:devel
> RUN install2.r --error broom.mixed\
> BiocManager \
> devtools \
> dirmult\
> fitdist
