Re: [ccp4bb] liquid handlers

2011-03-11 Thread Artem Evdokimov
I absolutely *love* our Formulator. Bless its little white socks. Artem On Fri, Mar 11, 2011 at 4:46 PM, Stephen McMahon wrote: > Hi again, > Just for clarification. > The robot we are looking for will only dispense solutions for creating > optimisation screens. > No protein dispensing. > Thanks

[ccp4bb] Psedo-translation detected

2011-03-11 Thread Vandu Murugan
Dear all, Recently I collected a data for my 20Kda protein in C2 space group, and ran SFcheck in ccp4 suite. It is giving an indication for pseudo-translation as 'Pseudo-translation is detected: 17.6% Pseudo-translation vector: 0.000 0.000 0.078. Is it a significant amount? Any commen

Re: [ccp4bb] Ubuntu 10.10 64-bit and COOT

2011-03-11 Thread Frank
I have instlled coot under 64 bits system, the problem is when I try to add some compound such as EG or PEG into map, the coot always noticed me it can not find the library of CCP4. But the ccp4 works very well in this machine. who can show me how to solve this problem. Thank you.

Re: [ccp4bb] Automating liquid dispensing

2011-03-11 Thread Jim Fairman
We also recently obtained a Liquidator 96 from Rainin. Working well so far and way below the price of any of the competitors. On Fri, Mar 11, 2011 at 5:41 PM, Engin Özkan wrote: > Dear Stephen, > > I did start a similar thread about a year ago. If you want to see the > posts, check this out and

[ccp4bb] liquid handlers

2011-03-11 Thread Stephen McMahon
Hi again, Just for clarification. The robot we are looking for will only dispense solutions for creating optimisation screens. No protein dispensing. Thanks, Stephen

Re: [ccp4bb] Automating liquid dispensing

2011-03-11 Thread Engin Özkan
Dear Stephen, I did start a similar thread about a year ago. If you want to see the posts, check this out and the responses to it: http://www.mail-archive.com/ccp4bb@jiscmail.ac.uk/msg14758.html In my case, the winner was the Liquidator 96 from Rainin. It has proven to be very useful and too

Re: [ccp4bb] Ubuntu 10.10 installation Issues

2011-03-11 Thread Katherine Sippel
Bingo! I might suggest adding this library to the list of packages to install in the platform specific portion of the problems page documentation. Thanks again. Katherine On Fri, Mar 11, 2011 at 4:01 PM, Ben Eisenbraun wrote: > Hi Katherine, > > > terminal and there are no issues there. Howeve

Re: [ccp4bb] Ubuntu 10.10 installation Issues

2011-03-11 Thread Ben Eisenbraun
Hi Katherine, > terminal and there are no issues there. However when I try to execute a > command (in this case "ccp4i") I get the error... > > exec: 4: /usr/local/ccp4/tcltk++/bin/bltwish: not found This happens to be the error you get when you run a 32-bit binary on a 64-bit Ubuntu machine _wi

[ccp4bb] Automating liquid dispensing

2011-03-11 Thread Stephen McMahon
Hi - We are in the market for a new liquid handling robot specifically for dispensing custom 96 well crystallisation screens. What are people using these days? Likes / dislikes? Many thanks, Stephen

[ccp4bb] Ubuntu 10.10 installation Issues

2011-03-11 Thread Katherine Sippel
Hi all, I recently upgraded (if you can call it that) to Ubuntu 10.10 and I'm having some issues with CCP4 and file recognition. I suspect this is an Ubuntu issue rather than a CCP4 issue but I'm hoping someone will have an idea. I downloaded the CCP4-Lin-generic.tar and ran the install.sh. It unp

Re: [ccp4bb] Coot "Bad magic number" errors

2011-03-11 Thread Sampson, Jared
Hi Bill - Thanks for the fix. I'll make the changes on the affected computers. Alternatively, I may just have them download the newest package, which appears to work fine on my machine. Thanks again for the help, and for providing these builds to the community! Jared -- Jared Sampson Xiangpen

Re: [ccp4bb] Automatic LINK generation

2011-03-11 Thread Andrey Lebedev
Dear Hailiang There are several protein-sugar and sugar-sugar link defined in the standard refmac library. You may try running refmac with the default options with the input pdb file in which - sugar residues included, - no LINK record are specified. If all required links are in the refmac's l

[ccp4bb] Diamond MX BAG Training - May 2011

2011-03-11 Thread James Nicholson
To all Diamond MX BAG Principal Investigators & Group Leaders, Diamond Light Source will be holding a training day for MX BAG Users on Wednesday 18th May 2011. The aim of the day is to provide BAG users with sufficient training to be able to operate any of the Diamond MX beamlines efficiently a

[ccp4bb] AW: [ccp4bb] Can procheck or other tools report bad geometry for ligand?

2011-03-11 Thread Stefan Gerhardt
Dear Roberto, I believe there are many "badly modeled" ligands with distorted geometry deposited in the PDB. Basically, because they haven't been checked properly beforehand, so I think running a geometry check of you desired ligand against the PDB. I think running your modeled geometry against