Dear All,
I have a small molecule structure file coordinates in CSD CIF format,
I would like to analysis inter-molecular interaction between them by
generating symmetry related nearest neighbor structures.
I want to store the coordinates of the generated structures and
further analysis it using
Danilo, There are two points that I want you to consider before I attempt to
answer your question:1. In terms of capabilities:Voidoo has the capability to
detect specific voids or all voids inside a bio-macromolecular complex, as well
as certain cavities that are connected to the outside
On 10/08/12 08:05, anita p wrote:
Dear All,
I have a small molecule structure file coordinates in CSD CIF format,
I would like to analysis inter-molecular interaction between them by
generating symmetry related nearest neighbor structures.
I want to store the coordinates of the generated
Dear all,
This discussion about OS's seems like a good time to flag up the UEFI
Secure Boot issue, for any of you who haven't heard about it. Quite what
it means for Linux depends on whose commentary you read, but it is just
possible that the carefree days of buying any x86-based system with
Hello everyone..
This is Runjhun Saran. I am new to studying inter-molecular protein
interactions and the residues involved in them. Can anyone suggest me
online websites or freely available softwares where we can put in the PDB
files of the interacting molecules and get the residues involved in
Hello all,
I am refining my structures with REFMAC 5 and is failed. Actually i used
ammonium dihydrogen phosphate buffer during crystallization and in the map file
where i observed the density of ammonium ion (NH4). I get this ion from the
coot library but when i run refmac its failed even i
one interpretation of your question could be answered with
CCP4i using Contact http://www.ccp4.ac.uk/html/contact.html and listing
contacts between say chain A and B.
You can do this also with the PISA server, assuming your PDB contains the
proteins in question as a complex.
Manually you could
I completely agree with Harry's observation about the glare screen feature.
I find it is quite literally an almost instant headache. There is an option
with the macbook pro to pay a ransom to get a usable screen, so my wife did.
On my macbook air, I found putting a dull dark grey background
Dear All,
The Membrane Protein Laboratory (MPL) at Diamond Light Source is organising a
Symposium in Membrane Protein Crystallisation on the 27th of September at the
Research Complex at Harwell - UK
The registration is now open:
Dear All,
Thanks a lot for the help, PISA and CCP4 has really helped me a lot!
Regards,
Runjhun
On Fri, Aug 10, 2012 at 9:11 PM, Jawahar Sudhamsu sudha...@gmail.comwrote:
Hi Runjhun,
This server works well for calculating inter-molecular protein
interactions.
A position is immediately available in the structural immunology program at the
Albert Einstein College of Medicine to pursue the expression, purification and
structure determination of a wide range of immune modulatory proteins and
complexes. Familiarity with high resolution structure
Another problem we encountered with the newly installed CCP4 6.3.0 on a
64-bit Linux computer:
The graphic window of Monomer Library Sketcher can't pop up, giving the
following error:
Can not run Monomer Library Sketcher with the BLT extension to Tcl/Tk
installed. See your system manager or
An immediate opening for a protein crystallographer position in UC San Diego.
The research is focused on the structural and functional investigation of
Nucleic Acids/Protein complexes.
The successful candidate should have a fresh Ph.D. in structural biology in
nucleic acids/protein complex and
I am looking for some expert advice on enzyme kinetics but for an assay in
plate format which has the substrate bound. This is different that the usual
homogeneous plate assays or heterogeneous assays where the enzyme (catalyst) is
plate bound.
In short I am trying to look at the Ki of a
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