Re: [ccp4bb] sftools and batch mode

2015-01-07 Thread Eleanor Dodson
Easier to use CAD for this! SFTOOLS is too clever.. Eleanor On 7 January 2015 at 03:45, Seth Harris set...@gmail.com wrote: Hi all, I have a heterogeneous collection of mtz files I'm trying to whip into some kind of standardized vocabulary shape, namely setting column names and types so

[ccp4bb] problems with wincoot 8.1 on windows 7 with multiple desktop

2015-01-07 Thread Laurent Maveyraud
Dear CCP4 users, I just installed the latest CCP4 / wincoot on my windows 7 machine. This machine runs also the dexpot software in order to have multiples desktop. Wincoot runs fine as long as I don't switch to an other desktop. If I do and come back to the desktop where wincoot is

[ccp4bb] Postdoctoral Research Associate at Nottingham University

2015-01-07 Thread Jonas Emsley
Job Title Research Associate Applications are invited for a Research Associate position funded by the Medical Research Council (MRC) for 3 years in the Centre for Biomolecular Sciences, Nottingham University. The project title is: ADAMTS13 structure and the molecular basis of

[ccp4bb] Postdoctoral Position to work on membrane protein crystallography at the University of Western Australia

2015-01-07 Thread Alice Vrielink
Structural Biology of Molecular Targets from Neisseria A postdoctoral research associate position is available to pursue crystallographic studies of membrane protein targets from Neisseria in Prof. Alice Vrielink’s laboratory at the University of Western Australia, Perth. The position will

[ccp4bb] Announcement: CCP4 crystallographic summer school in USA, at APS, June 16-23

2015-01-07 Thread Sanishvili, Ruslan
Dear Colleagues, We are pleased to announce the eighth annual CCP4 crystallographic summer school at Advanced Photon Source (APS), Argonne National Laboratory (ANL). All details can be found at http://www.ccp4.ac.uk/schools/APS-2015/index.phphttp://www.ccp4.ac.uk/schools/APS-2014/index.php

[ccp4bb] Ugly fonts in ccp4i under Linux...

2015-01-07 Thread Kevin Cowtan
Hi! I don't know if anyone else is having problems with ccp4i fonts looking very ugly under Linux, in particular recent versions of Ubuntu? I couldn't find anything about it online. Well, if you are, I have the solution. 1. Install at least the xfonts-75dpi or xfonts-100dpi packages 2. Create a

[ccp4bb] Postdoctoral position available at UT Southwestern Medical Center at Dallas

2015-01-07 Thread Hong Zhang
A postdoctoral researcher position has just become available in Dr. Hong Zhang’s laboratory to study mammalian circadian clocks. The overall goal of the project is to understand how various multi-domain clock proteins interact with each other; and how these interactions are modulated to

[ccp4bb] Tenure-track faculty positions in Immunity and Inflammation

2015-01-07 Thread Matthew Neiditch
Employer Rutgers Biomedical and Health Sciences, New Jersey Medical School Location Newark, NJ Discipline Life Sciences, Immunology Position Type Full Time Job Type Faculty Salary Academic rank and salary will be commensurate with qualifications and experience The Center for

[ccp4bb] Macromolecular Software Scientist

2015-01-07 Thread Leighton Coates
Dear Colleagues We are looking to recruit a Macromolecular Software Scientist to join the Biology and Soft Matter Division at Oak Ridge National Laboratory. Interested Parties can apply using the link below. For informal inquiries please contact Leighton Coates at coat...@ornl.gov

Re: [ccp4bb] CCP4 Release 6.5

2015-01-07 Thread Bernhard Rupp (Hofkristallrat a.D.)
OK I tried this on a 3rd machine (6.4 to 6.5 w/o uninstall of 6.4 before 6.5 install). Same result. Window attached. Somehow it seems the shortcut icon does not properly update. Its command becomes C:\CCP4\TclTk84\bin\wish.exe C:\CCP4\6.5\share\ccp4i\bin\ccp4i.tcl Changing the command to

[ccp4bb] PhD studentship opportunity in

2015-01-07 Thread Mike Hough
Dear CCP4ers, Could you please pass on details of this studentship opportunity to any suitable candidates? Many thanks, Mike Fully-funded three year PhD Studentship: April 2015 Generating Structural Movies of Enzyme Catalysis Supervisor: Dr Mike Hough, University of Essex Project

Re: [ccp4bb] Some advices on model modification

2015-01-07 Thread Schubert, Carsten [JRDUS]
Hi Allen, MR with low homology search models is also sensitive to the quality of your dataset. Besides the other recommendations already offered make sure that your dataset is of high quality. I recommend collecting a couple of good natives and try them all in your search. Good luck

Re: [ccp4bb] sftools and batch mode

2015-01-07 Thread Bart Hazes
I agree with Eleanor. Sftools was designed for a different purpose. I does have a batch mode but I am not sure it will solve your problems completely and the little notice on top already indicates that this was never considered to be an ideal solution. Here is the MODE help page. You can give it a

Re: [ccp4bb] CCP4 Release 6.5

2015-01-07 Thread Marcin Wojdyr
On Mon, Dec 22, 2014 at 10:43:27AM +0100, Bernhard Rupp wrote: Upon windows upgrade with default settings, the previous desktop icon 6.4 command line C:\CCP4\TclTk84\bin\wish.exe C:\CCP4\6.5\share\ccp4i\bin\ccp4i.tcl will not work anymore. I forgot to reply to this in December. I couldn't

[ccp4bb] CCP4 Study Weekend 2015 Advances in Experimental Phasing - Live Web Streaming

2015-01-07 Thread Ronan Keegan
Dear All, The webcast for this year's CCP4 Study Weekend on Advances in Experimental Phasing taking place on the 8/9 of January will be available from the STFC Webinars page: http://www.stfc.ac.uk/webinars A programme for the meeting can be found here:

Re: [ccp4bb] problems with wincoot 8.1 on windows 7 with multiple desktop

2015-01-07 Thread B.Lohkamp
Dear Laurent, I run the same multiple desktops. The only convenient way I found to fix this is to show WinCoot on all desktops. Its due to the new graphics libraries which were updated and I didnt want to dive into this to fix it properly (I thought I would be the only one running this -