Dear ccp4i2 developers,
I am trying to run manual coot for sugar correction after privateer.
Privateer works fine, but the subsequent manual coot (button)
starts but exits with a short error message and
plenty of error logs I do not completely comprehend.
Coot itself also works fine.
Me.
On 7 July 2017 at 10:38, Bernhard Rupp wrote:
> Dear ccp4i2 developers,
>
>
>
> I am trying to run manual coot for sugar correction after privateer.
>
> Privateer works fine, but the subsequent manual coot (button)
>
> starts but exits with a short error message and
>
> plenty of error logs
Any suggestions regarding to the positive densities?
The crystallisation condition only has NaCl and CaCl
[cid:DD08D41F-CAB5-458D-BBD0-5DDCADC746FF@diamond.ac.uk]
[cid:B6BDEE5E-325C-4FEF-A7BC-B4F679D5315F@diamond.ac.uk]
Best regards,
Isabel
--
This e-mail and any attachments may cont
"Dr. Isabel De Moraes" writes:
> Any suggestions regarding to the positive densities?
>
Your pictures didn’t seem to make it as attachments, at least as
received here.
BW,
--
Ian ◎
Yes no images came through, however on looking at your crystallisation
conditions for clues, is there anything in the protein prep that could have
been carried through, even from the early stage buffers, or cell growth media?
We once had a detergent in the cell lysis stage that was removed from
Dear all,
My apologies for not being able to see the pictures. I have attached them as
PDFs here but not sure if you will be able to get the files.
Anyway, many thanks to all who have reply via ccp4bb or privately with
suggestions. Indeed the protein is purified from the natural source so ther
I happen to be one of those people who think Rmerge is a very useful
statistic. Not as a method of evaluating the resolution limit, which is
mathematically ridiculous, but for a host of other important things,
like evaluating the performance of data collection equipment, and
evaluating the iso
Okay, that /is/ a strong answer: Rmeas has too many infinities for
comfort. Thanks, very instructive yet again!
phx
On 07/07/2017 18:57, James Holton wrote:
I happen to be one of those people who think Rmerge is a very useful
statistic. Not as a method of evaluating the resolution limit, w
James,
I cannot follow you. "n approaches 1" can only mean n = 2 because n is integer.
And for n=2 the sqrt(n/(n-1)) factor is well-defined. For n=1, neither
contributions to Rmeas nor Rmerge nor to any other precision indicator can be
calculated anyway, because there's nothing this measurement
Not so fast:
First of all, I cannot remember having ever come across a paper reporting a
multiplicity of around 1, and if there are such cases, they are so rare that
they are not worth accounting for, and should raise eyebrows in the first
place, cast into doubt all of the statistics, let alone
I think the confusion here is that the "multiplicity correction" is applied
on each reflection, where it will be an integer 2 or greater (can't estimate
variance with only one measurement). You can only correct in an approximate
way using using the average multiplicity of the dataset, since it wou
Dear All,
A CPRIT funded postdoctoral position on single particle cryo-EM is available at
Houston Texas Medical Center. The project will be led by the Dr. Mien-Chie Hung
group at the University of Texas MD Anderson and will involve collaborations
with Dr. Zhao Wang group (Baylor College of Medic
Dear All,
I wanted to send a reminder message out about the following positions.
Vertex Pharmaceuticals (Europe) Ltd has two open Research Scientist positions
in the Structural Biology and Biophysics group at our UK site (Abingdon,
Oxfordshire).
One position is for a structural biologist with e
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