Re: [ccp4bb] anisou cards and refmac

2018-10-15 Thread Harry Mark Greenblatt
BS”D Dear Garib, This is a deposited structure, not something I did. They used REFMAC 5.8.0107 Harry On 15 Oct 2018, at 12:25 PM, Garib Murshudov mailto:ga...@mrc-lmb.cam.ac.uk>> wrote: Dear Harry, Could you please send the script or log file from refmac. It should have not happened,

[ccp4bb] anisou cards and refmac

2018-10-15 Thread Harry Mark Greenblatt
BS”D Dear All, I would just like to know how refmac handles the following setup. A deposited structure (2.8Å resolution) is a homotrimer protein (chains A, B,C) with bound dsDNA (chains D, E), and some water molecules. There is NCS (type: local) defined between the three protein chains (A

[ccp4bb] areaimol and hydrogens

2014-07-28 Thread Harry Mark Greenblatt
BSD Dear All, I understood from the areaimol documentation that hydrogens are not included as one of the default atoms. But one can add atoms, and so I added an ATOM line for hydrogen. The program quite happily accepted my input line, but later on stated explicitly that it was ignoring

[ccp4bb] visualizing ds DNA conformation

2013-03-05 Thread Harry Mark Greenblatt
BSD Dear All, Is there a readily available facility to produce a plot in the same spirit as a protein Ramachandran plot, but for DNA. In particular showing clear differences between different types of double stranded DNA (A vs. B, for example). Thanks Harry

Re: [ccp4bb] GeForce Graphics cards

2013-02-13 Thread Harry Mark Greenblatt
BSD Dear Alex, I'm not sure why you think the new Geforce cards will be an issue. Please clarify. As far as stereo is concerned, Geforce cards only give stereo under Windows, not Linux. If you want stereo under Linux you need the Quadro cards with the stereo option (for example, Quadro