[ccp4bb] Phaser gives error in 6.4.0 version

Dear All, Installed the CCP4 6.4.0 version recently on CentoS 5. When I try to run phaser I get the following error. Apparently I can reproduce the error for different reflection file. This happens after getting the rotation, translation and packing function. Any suggestions to this problem is

[ccp4bb] Problem in running ARP_WARP in CCP4i

Word too long. QUITTING ... ARP/wARP module stopped with an error message: /home/programs/linux/ccp4/arp_warp_7.3/bin/bin-x86_64-Linux/auto_tracing.sh --- Thanking you With regards S. Karthikeyan

[ccp4bb] comit mtzout writing problem...

Dear All, I am trying to run comit in slow mode. The programs runs fine till refmac where all the 'prefix' mtz files are created. However when I give the command to assemble all the mtz files using the command (separately): comit --prefix omit1 --mtzout omit1.mtz (OR) comit -prefix omit1 -mtzout

Re: [ccp4bb] SFCHECK produces incomplete postscript

If you have break in the protein chain, this problem will occur. Put "TER" card in the PDB file where ever the chain break is there, then run SFCHECK. The .ps output now will be complete and should be able to see in the viewer. HTH -Karthik > Dear all, > > I have been trying to compare a

Re: [ccp4bb] ccp4-6.1.3 phaser sigmaa weighted maps problem

Hi, Similar problem occured even in CCP4-6.1.0 in our case. So, we used to take the phaser output model and do rigid body refinement with REFMAC and see the density (in coot), which normally much better than output from PHASER mtz. I am not sure whether it is for case to case or it is general prob

Re: [ccp4bb] Request for def.site for HKL2000 for ESRF-BM14 MAR 225 CCD

Dear All, I got the file. Thanks a lot for the same. I apologize for posting a 'non-CCP4' question to the CCP4BB. With regards S.Karthikeyan > Dear All, > > I am looking for def.site file for HKL2000 used in ESRF-BM14 beam line. We > collected the data using MAR 225 CCD detector. The following

[ccp4bb] Request for def.site for HKL2000 for ESRF-BM14 MAR 225 CCD

Dear All, I am looking for def.site file for HKL2000 used in ESRF-BM14 beam line. We collected the data using MAR 225 CCD detector. The following link does not seem to work for me. http://www.esrf.fr/exp_facilities/BM14/runexperiment/bm14-def.site We need this file to process our data in the hom

Re: [ccp4bb] space groups not supported by Refmac5

Hi, Following mail (retrived from ccp4bb archieve) may help for intechanging the cell axis. HTH S.Karthikeyan == I have a CCP4 script for this: http://bl831.als.lbl.gov/~jamesh/elves/scripts/reindex.com If you run the script like t