Re: [ccp4bb] Phaser 2.8.3: Hendrickson-Lattman coefficients generated from dataset lacking anomalous signal

2024-02-09 Thread Eleanor Dodson
If I remember for coefficients with FOM and a precise PHI calculated, A = FOM*cos(phi) B = FOM*sin(phi) C=D=0 If you have a probability curve for PHI. 0 to 360 such as you get from experimental phasing, A B C D mirror this bimodal curve better .. On Fri, 9 Feb 2024 at 09:58, Nitin Kulhar <

Re: [ccp4bb] Phaser 2.8.3: Hendrickson-Lattman coefficients generated from dataset lacking anomalous signal

2024-02-09 Thread Nitin Kulhar
Dear sir Thank you for clearing that. I checked back to see that HLC/D are invariably 0 for all reflections, with the non-zero HLA/B supposedly having been originated from the probability distribution of phases *calculated* by phaser. Hopefully, I have not misunderstood it. Thanks and regards

Re: [ccp4bb] Phaser 2.8.3: Hendrickson-Lattman coefficients generated from dataset lacking anomalous signal

2024-02-08 Thread Randy John Read
Hi, Hendrickson-Lattman coefficients are just a way of storing phase probability information, and they can come from different sources including atomic models. Phaser puts in HL coefficients because they could be handy under some circumstances for combining the phase information from

[ccp4bb] Phaser 2.8.3: Hendrickson-Lattman coefficients generated from dataset lacking anomalous signal

2024-02-08 Thread Nitin Kulhar
Dear all Is anomalous diffraction necessary for determining experimental phases and the Hendrickson-Lattman coefficients (HLA, HLB, HLC, and HLD)? MR solution from Phaser 2.8.3 (interfaced in ccp4 8.0.000 suite) seems to be generating HLA/B/C/D coefficients from an x-ray diffraction dataset.