Re: [COOT] hardware stereo

2021-02-27 Thread David Schuller
I think that's normal. The cross should appear in only one eye, since it is used for picking atoms and there is no mechanism to control the third dimension. On 2/27/21 5:01 AM, Andrea wrote: Hi everyone, I also have a problem with the stereo view. I got my map back after using the commands

Re: [COOT] Coot Error/missing Libs after OS update

2019-07-02 Thread David Schuller
dnf whatprovides "*/libcrypt.so.1" libxcrypt-compat-4.4.6-2.fc30.i686 libxcrypt-compat-4.4.6-2.fc30.x86_64 glibc-arm-linux-gnu-2.27-4.fc29.x86_64 libxcrypt-compat-4.4.4-2.fc30.i686 libxcrypt-compat-4.4.4-2.fc30.x86_64 -- Try the one  compatible with your platform On 7/2/19 3:27 PM, Gerald

Re: [COOT] After upgrades I can no longer run coot over an ssh connection

2018-05-27 Thread David Schuller
swrast is a red herring, but I think the other error messages have to do with the nVidia drivers and their relationship to various OpenGL libraries.  We have recently noticed similar error messages with ccp4mg, so it is not a coot specific problem. We do not see the error messages on

Re: [COOT] Hardware stereo setup help [SOLVED]

2013-09-03 Thread David Schuller
On 09/03/13 03:08, Arnaud Basle wrote: Somehow I managed to get the emitter going to error and glowing red. The problem was solved by rebooting into windows and back to linux. The emitter is recognized during bootup. If you plug it in after bootup, it won't work. --

Re: [COOT] Hardware stereo setup help

2013-09-02 Thread David Schuller
In addition to using STEREO mode 10, try adding this section to xorg.conf: Section Extensions Option Composite Disable EndSection Full xorg.conf file included at the bottom of this post. On 09/02/13 11:52, Arnaud Basle wrote: Dear Coot and Pymol users, I have the same problem

Re: [COOT] RPM coot on Fedora 19

2013-08-15 Thread David Schuller
On 08/14/13 13:05, Tim Fenn wrote: There is a fix on the way (I hope!): Package coot-0.7-5.20120929svn4458.fc19: * should fix your issue, * was pushed to the Fedora 19 testing repository, * should be available at your local mirror within two days. Update it with: # su -c 'yum update

[COOT] RPM coot on Fedora 19

2013-08-14 Thread David Schuller
The RPM version of COOT on Fedora 19 appears to have some dependency issues with libssm and libclipper. # yum install coot Loaded plugins: langpacks, refresh-packagekit Resolving Dependencies -- Running transaction check --- Package coot.x86_64 0:0.7-1.20120929svn4458.fc18 will be installed --

Re: [COOT] COOT Digest - 9 Jul 2013 to 10 Jul 2013 (#2013-88)

2013-07-11 Thread David Schuller
The Quadro 400 and 600 appear to be older models. Is there any reason not to go with the newer Quadro 410 and Quadro K600? On 07/10/13 19:52, Joe Batchelor wrote: Hi Nat, I would like to second Andreas' recommendation regarding 3D. We use an identical setup, and it is an excellent 3D

[COOT] HD3D on Linux?

2012-12-18 Thread David Schuller
Has anyone had success running Stereo 3D on Linux with AMD's HD3D technology? http://www.amd.com/us/products/technologies/amd-hd3d/Pages/hd3d.aspx I haven't been able to find out much about Linux compatibility. Suppose I had a Radeon HD 7770 with a Samsung S23A950D monitor hooked up via

[COOT] Fwd: Re: Data-related : space group standardization (help-2767)

2012-01-27 Thread David Schuller
Huzzah! Original Message Subject:Re: Data-related : space group standardization (help-2767) Date: Fri, 27 Jan 2012 05:32:43 -0700 From: redacted Reply-To: info i...@rcsb.org To: i...@rcsb.org CC: schul...@cornell.edu Dear Dr. Schuller, Yes, you are

Re: [COOT] Centrosymmetric space groups

2012-01-18 Thread David Schuller
Perhaps someone should contact the PDB first and get their opinion on this. They may not be aware that their practice diverges from IUCr and Cambridge data base. Centrosymmetric space groups are something of a novelty in the macromolecular world. A quick search at RCSB turned up 13 entries.

Re: [COOT] Centrosymmetric space groups

2012-01-17 Thread David Schuller
That file was straight from the RCSB. On 01/17/12 13:50, Roberts, Sue A - (suer) wrote: Hi Dave I think you need P -1, not P 1- (or, perhaps -P 1) look in the ccp4 syminfo.lib file for notation. I have used coot with centrosymmetric space groups. Sue On Jan 17, 2012, at 11:19 AM, David

Re: [COOT] Fedora 14 update kills Coot

2011-09-12 Thread David Schuller
On 09/09/11 16:15, Tim Fenn wrote: On Fri, 9 Sep 2011 14:12:37 -0400 David Schullerdj...@cornell.edu wrote: A friend updated software on his Fedora 14 workstation within the last couple days, and now Coot and pyMol both fail to work. Coot complains that it can find neither the double-buffered

Re: [COOT] Fedora 14 update kills Coot

2011-09-12 Thread David Schuller
On 09/12/11 13:10, David Schuller wrote: On 09/09/11 16:15, Tim Fenn wrote: On Fri, 9 Sep 2011 14:12:37 -0400 David Schullerdj...@cornell.edu wrote: A friend updated software on his Fedora 14 workstation within the last couple days, and now Coot and pyMol both fail to work. Coot complains

[COOT] Fedora 14 update kills Coot

2011-09-09 Thread David Schuller
A friend updated software on his Fedora 14 workstation within the last couple days, and now Coot and pyMol both fail to work. Coot complains that it can find neither the double-buffered visual nor a single-buffered visual. Has anyone else encountered this (yet)? Which packages are the most

[COOT] Smooth recentering in startup script

2011-04-15 Thread David Schuller
I like to cut down the number of steps for smooth recentering due to the (lack of) speed of my graphics. How can I put this in one of the startup scripts rather than clicking through the menus every time? -- === All Things

Re: [COOT] Problem viewing maps with hardware stereo

2011-03-26 Thread David Schuller
On 03/26/11 10:25, Richard Baxter wrote: Dear All, I have Coot 0.6.2-pre-1 running on Fedora 14, with NVIDIA Quadro FX3800 + Smasung 120 Hz LCD monitor and NVIDIA 3D vision kit. Hardware stereo works great, except that when displaying a model and a map, the map disappears when I switch to