o commands (L or l) in path data of svg.
(*) http://www.w3.org/TR/SVG11/paths.html#PathDataMovetoCommands
> If a moveto is followed by multiple pairs of coordinates,
> the subsequent pairs are treated as implicit lineto commands.
Regards,
Takaaki Fukami
-
Dr. Takaaki Fukami (mailto:fuka
behaviour as radios for "Scroll".
Takaaki Fukami
-
Discovery Research Dept. (Biostructure Gr.)
Chugai Pharmaceutical Co.,Ltd.
-Original Message-
From: Mailing list for users of COOT Crystallographic Software
[mailto:COOT@JISCMAIL.AC.UK] On Behalf Of Paul Emsley
Sent: Thur
msley
Sent: Thursday, January 19, 2012 1:59 AM
To: COOT@JISCMAIL.AC.UK
Subject: Re: mutate a residue to a custom monomer
On 18/01/12 12:21, Judit Debreczeni wrote:
> Have you tried loading both the pdb and cif files for the custom residue?
Hi Takaaki Fukami,
Yes, that is the way that it'
it was extracted from the default library file,
even if I supplied a custom cif file for the monomer.
How do I mutate a residue to my custom monomer in Coot?
Regards,
Takaaki Fukami
-Original Message-
From: Paul Emsley [mailto:paul.ems...@bioch.ox.ac.uk]
Sent: Friday, January 13, 2012 9:1
Im Auftrag von Takaaki Fukami
Gesendet: Mittwoch, 18. Januar 2012 08:00
An: COOT@JISCMAIL.AC.UK
Betreff: Re: N-terminal ACE restraints
Dear Paul,
Coot handles the ACE group properly, though it won't write any LINK record
to a pdb file to refine it by refmac. Therefore, the ACE group moved awa
kaaki
-Original Message-
From: Paul Emsley [mailto:paul.ems...@bioch.ox.ac.uk]
Sent: Tuesday, January 17, 2012 9:47 PM
Subject: Re: N-terminal ACE restraints
On 17/01/12 12:01, Takaaki Fukami wrote:
> Dear Coot experts,
>
> I have a protein with an N-acetyl group at its N-termina
t.
Regards,
Takaaki
-Original Message-
From: Paul Emsley [mailto:paul.ems...@bioch.ox.ac.uk]
Sent: Tuesday, January 17, 2012 9:47 PM
Subject: Re: N-terminal ACE restraints
On 17/01/12 12:01, Takaaki Fukami wrote:
> Dear Coot experts,
>
> I have a protein with an N-acetyl group
from B0 to B1, the ACE group moved away
from the next PHE. They won't connect each other.
I extracted the data_link_ACE_C-N section from the mon_lib_list.cif file
and import it into Coot, but it didn't work.
How do I include the link restraints into Coot?
Thank you.
Takaaki Fukami
least
for nucleotides and DNA
Best Sabine
On 01/13/2012 01:00 PM, Takaaki Fukami wrote:
> Dear Coot experts,
>
> I'm working on a peptide with an N-methyled amino acid in the middle.
> How can I connect this residue to previous/next residues?
>
> To simplify the probl
hough you didn't mention how to handle the terminal group.
Thank you.
Takaaki Fukami
-
Discovery Research Dept. (Biostructure Gr.)
Chugai Pharmaceutical Co.,Ltd.
aul Emsley [mailto:paul.ems...@bioch.ox.ac.uk]
Sent: Friday, January 13, 2012 9:16 PM
Subject: Re: How to connect N-methylated amino acid?
On 13/01/12 12:00, Takaaki Fukami wrote:
> Dear Coot experts,
>
> I'm working on a peptide with an N-methyled amino acid in the middle.
> How can I co
the connectivity between a special residue and
standard amino acids?
Thank you in advance.
Takaaki Fukami
-
Discovery Research Dept. (Biostructure Gr.)
Chugai Pharmaceutical Co.,Ltd.
.2939) on CentOS 4 (i386).
Coot crashes when deleting a water from the attached pdb file (104 waters).
If I add/remove even a water to/from the pdb file, coot won't crash anymore.
I'm puzzled.
Regards,
-
Takaaki Fukami
Discovery Platform Technology Dept. Gr.1
Chugai Pha
Dear all,
How do I connect residues not sequentially numbered in Coot?
I'm working on a construct lacking an internal loop (deletion mutant),
and I want to keep residue numbers as original.
I use Coot ver.0.6.
Thanks in advance.
Takaaki Fukami
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