Dear Jan,
in principle you can (ab-)use the program mrtailor for this purpose. You
provide the PDB file, the sequence alignment (the way you want it to be
aligned) and it will mutate only the mismatches and leave all other
residues in the PDB file untouched. There is a command line option but
Hi all,
I have experienced strange behavior of Alignmutate tool. I wanted to
correct few differences in sequence with it, and there is a place in the
sequence looking like this:
orginal sequence:
XYZDSUVW
new sequence:
XYZSPUVW
which ends after Alignmutate like this:
XYZDS-UVW
XYZ-SPUVW
and
Hi Jan,
One of the little extensions I have written for coot (which you can download
from: https://www.dropbox.com/s/0b4bebwxw0p9x0e/oli_custom.py?dl=0 or at
cootscripts.tiddlyspace.com), might be handy for this (in the script it is the
function mutate_by_resnum).
It does not align the
