[COOT] coot operator for SYMGEN - Make new molecule from symop- pisa interface?

2013-10-23 Thread hari jayaram
I have a question about the expanded syminfo labels in coot and the menu item : Extensions-Modelling-New Molecule from symop. I have a dimer in the assymetric unit in which the two molecules that phaser picked as the solution do not share any contact area . I want to put chain A together with a s

Re: [COOT] coot operator for SYMGEN - Make new molecule from symop- pisa interface?

2013-10-23 Thread Nat Echols
Just to add to Hari's question: I tried to show a user how to do the same thing last week, and found it much too complicated. I'd love to see a function that lets me swap chains with their symmetry mates - this situation comes up all the time and I've also had to resort to PyMOL in the past. Idea

Re: [COOT] coot operator for SYMGEN - Make new molecule from symop- pisa interface?

2013-10-24 Thread ing. Jan Stránský
You can switch on symmetry related molecule ghots on via Draw-> Cell & Symmetry. Find the correct one and then choose File -> Save Symmetry Coordinates and left-click on desired molecule. I think, it will introduce you whole dimer, but to remove a chain is easy. Hope it helps, Jan On 10/23/201

Re: [COOT] coot operator for SYMGEN - Make new molecule from symop- pisa interface?

2013-10-24 Thread Paul Emsley
On 23/10/13 11:48, hari jayaram wrote: I have a question about the expanded syminfo labels in coot and the menu item : Extensions-Modelling-New Molecule from symop. I have a dimer in the asymmetric unit in which the two molecules that phaser picked as the solution do not share any contact area

Re: [COOT] coot operator for SYMGEN - Make new molecule from symop- pisa interface?

2013-10-24 Thread hari jayaram
Thanks a tonne Paul.. That is exactly what I was looking for. It works like magic :-) Hari On Thu, Oct 24, 2013 at 9:38 AM, Paul Emsley wrote: > On 23/10/13 11:48, hari jayaram wrote: > >> I have a question about the expanded syminfo labels in coot and the menu >> item : Extensions-Modelling-

Re: [COOT] coot operator for SYMGEN - Make new molecule from symop- pisa interface?

2013-10-24 Thread Paul Emsley
Glad to hear it :-) You can thank Randy Read for prompting me to do it. Paul. On 24/10/13 12:45, hari jayaram wrote: Thanks a tonne Paul.. That is exactly what I was looking for. It works like magic :-) Hari On Thu, Oct 24, 2013 at 9:38 AM, Paul Emsley mailto:pems...@mrc-lmb.cam.ac.uk>