[deal.II] Re: Installation on cray XC50 | linking to petsc, lapack and blas libraries with different names

2020-02-10 Thread vachan potluri
Ok. After installing newer cmake version and making _lapack_libraries OPTIONAL, LAPACK configuration has gone fine. For PETSc, I did something dirty. I figured that FindPETSC.cmake searches for libraries in a file named petscvariables. I made my own copy of petscvariables file and modified the

Re: [deal.II] Re: Problem installing Dealii-9.0.0

2020-02-10 Thread Daniel Arndt
Felipe, The relevant error is at the end of the file: Linking CXX executable cmTC_9dc5e /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cmTC_9dc5e.dir/link.txt --verbose=1 /usr/bin/c++ -DDEAL_II_HAVE_USABLE_FLAGS_DEBUG -pedantic -fPIC -Wall -Wextra -Wpointer-arith -Wwrite-strings -Wsynth

Re: [deal.II] Re: Problem installing Dealii-9.0.0

2020-02-10 Thread Felipe Orellana
Hello Dan, Thanks for your attention. I attach the CMakeError.log The first error is: c++: error: unrecognized command line option '-Wplacement-new' Maybe there is a chain sequence, so all sprouts from it.. cheers many, Felipe On Mon, 10 Feb 2020 at 23:41,

Re: [deal.II] Macro periodic boundary condition for a elasticity equation

2020-02-10 Thread 'Lukas Schöller' via deal . II User Group
Hi Jean-Paul, thanks for you detailed answer. You described excatly what I want to do. And I guess what is working for a finite deformation framework, works also for the case of small strains. The main goal for me is still is to apply a prescribed marcoscopic stress tensor. But it is always

Re: [deal.II] Re: deal.II installation on cray XC50 giving MPI_VERSION=0.0

2020-02-10 Thread Wolfgang Bangerth
On 2/7/20 11:43 PM, vachan potluri wrote: I really appreciate and value your involvement in this thread. I have attached mpi.h with this mail. I want to mention that I added this line in FindMPI.cmake just before DEAL_II_FIND_FILE(MPI_MPI_H ...): MESSAGE(STATUS "Searching for mpi.h in

[deal.II] Re: Using deal.ii 9.1.1 in a Qt5 program

2020-02-10 Thread Bruno Turcksin
Arnoud, Wolfgang already explained how to get CMake working but I wanted to let you know about an issue (and a solution!) when using QT and deal.II together: https://github.com/dealii/dealii/issues/7524 Best, Bruno On Monday, February 10, 2020 at 4:00:16 PM UTC-5, Arnoud de Geus wrote: > >

Re: [deal.II] Macro periodic boundary condition for a elasticity equation

2020-02-10 Thread Jean-Paul Pelteret
Hi Lukas, If I’ve interpreted your emails correctly, you’ve mentioned two distinct things here, namely (1) the imposition of periodic displacement fluctuation field (thereby, in essence, prescribing a macroscopic average deformation gradient, with stress unknown) or (2) the imposition of a

Re: [deal.II] Using deal.ii 9.1.1 in a Qt5 program

2020-02-10 Thread Wolfgang Bangerth
I'm trying to use deal.ii 9.1.1 in a Qt5 program, effectively trying to build a functional FEM UI on deal.ii The usage of the Cmake system for Qt and Deal.ii do seem to be completely incompatible though. Arnoud, I know nothing about the Qt configuration system and how they are incompatible.

[deal.II] Using deal.ii 9.1.1 in a Qt5 program

2020-02-10 Thread Arnoud de Geus
Hello, I'm trying to use deal.ii 9.1.1 in a Qt5 program, effectively trying to build a functional FEM UI on deal.ii The usage of the Cmake system for Qt and Deal.ii do seem to be completely incompatible though. Has anyone experience with this? -- The deal.II project is located at

[deal.II] deal.II Newsletter #109

2020-02-10 Thread Rene Gassmoeller
Hello everyone! This is deal.II newsletter #109. It automatically reports recently merged features and discussions about the deal.II finite element library. ## Below you find a list of recently proposed or merged features: #9503: Create separate artifacts in GitHub workflows (proposed by

Re: [deal.II] Re: Problem installing Dealii-9.0.0

2020-02-10 Thread Bruno Turcksin
Le lun. 10 févr. 2020 à 10:41, Daniel Arndt a écrit : > The problem here are the additional quotes in the compiler arguments, see > https://godbolt.org/z/bwDjWy. Strange, I get that problem with gcc 4.8 and 4.9 but it works with the other versions of gcc. Bruno -- The deal.II project is

Re: [deal.II] Re: Problem installing Dealii-9.0.0

2020-02-10 Thread Daniel Arndt
> So this is a strange bug. The problem is from the flag > -Woverloaded-virtual With gcc 4.8 and 4.9 As you can see the flag > alone works https://wandbox.org/permlink/GLbCK7qVqfScXrZp but if I add > another flag it won't compile > https://wandbox.org/permlink/4Lw7aNqGlJkik6SL If you have access

Re: [deal.II] Re: Problem installing Dealii-9.0.0

2020-02-10 Thread Bruno Turcksin
Felipe, So this is a strange bug. The problem is from the flag -Woverloaded-virtual With gcc 4.8 and 4.9 As you can see the flag alone works https://wandbox.org/permlink/GLbCK7qVqfScXrZp but if I add another flag it won't compile https://wandbox.org/permlink/4Lw7aNqGlJkik6SL If you have access to

Re: [deal.II] Re: Problem installing Dealii-9.0.0

2020-02-10 Thread Felipe Orellana
Bruno ! Thanks for replying so swiftly. Yes, I had forgotten to recreate the dir from scratch to avoid carrying trash.. I recreated a new building directory, did it from there, I attach a log file with the corresponding output. My compilers (g++, gcc): gcc version 4.8.5

Re: [deal.II] Re: Problem installing Dealii-9.0.0

2020-02-10 Thread Bruno Turcksin
Felipe, Le lun. 10 févr. 2020 à 08:49, Felipe Orellana a écrit : > Here I post the output: Can you redo it in a clean directory. The output from CMake is different the first time you run it. Also which compiler are you using? Best, Bruno -- The deal.II project is located at

Re: [deal.II] Re: Problem installing Dealii-9.0.0

2020-02-10 Thread Felipe Orellana
Hello Bruno, Thanks for replying. Here I post the output: cmake -DCMAKE_INSTALL_PREFIX=/home/Felipe/BIGSOFTWARE/dealii-9.0.0/ /home/Felipe/BIGSOFTWARE/dealii-9.0.0 -- This is CMake 3.16.0-rc3 -- -- Include /home/Felipe/BIGSOFTWARE/dealii-9.0.0/cmake/setup_external_macros.cmake --

[deal.II] Re: Problem installing Dealii-9.0.0

2020-02-10 Thread Bruno Turcksin
Felipe, Can you post everything that deal.II prints on the screen. Best, Bruno On Monday, February 10, 2020 at 1:59:16 AM UTC-5, Felipe Orellana wrote: > > > Hello, > > My name is Felipe. I am trying to install dealii-9.0.0 on my local > cluster. > > After commanding > > cmake

[deal.II] Re: deal.II installation on cray XC50 giving MPI_VERSION=0.0

2020-02-10 Thread Bruno Turcksin
Vachan, I saw on the other thread that you were using CMake 3.5. I would advise to download a newer version of CMake. deal.II uses FindMPI from CMake and this was rewritten in CMake 3.10 to fix problems with Cray supercomputers. Best, Bruno On Saturday, February 8, 2020 at 1:43:59 AM UTC-5,

[deal.II] Re: Macro periodic boundary condition for a elasticity equation

2020-02-10 Thread 'Lukas Schöller' via deal . II User Group
Hi, I have thought about the problem again and now I have a solution proposal: [[ u_i ]] = 0, would I fulfill by adding entries in the constraint matrix. E.g. u_i = u_j for each DoF pair on the boundary. I just have to figure out the DoF indices i and j. The average overall stress