[deal.II] Installation error of deal.II in the Stampede2 cluster

Hello, I am trying to install deal.II v 9.2.0 on the TACC Stampede2 cluster. I already a working installation but when I tried to install it again using the same instructions I am getting the following error: /opt/apps/gcc/6.3.0/bin/ld.gold: error: ../lib/libdeal_II.so.9.2.0: bad symbol name

Re: [deal.II] deal.II Installation Error

Dear Dr. Wolgang Bangerth Certainly that is the case as you illustrated since I am installing deal.II 9.0.0 in order to run PRISMS-PF and my Trilinos is not built with MueLu which was creating an issue so I excluded the installation with trilinos during the installation of deal.II and managed to

Re: [deal.II] deal.II Installation Error

On 4/2/21 4:29 AM, pushkar...@gmail.com wrote: /home/pushkar/dealii-9.0.0/source/lac/trilinos_precondition_muelu.cc: fatal error: MueLu_EpetraOperator.hpp: No such file or directory    34 | #  include Pushkar -- the questions to ask are (i) does this file exist, (ii) if it does, why is

[deal.II] Re: deal.II Installation Error

Any help in this regard will be helpful . Regards Pushkar On Friday, April 2, 2021 at 3:59:45 PM UTC+5:30 pushkar...@gmail.com wrote: > > Dear deal.II community, > > In my attempt to install deal.II with p4est and mpi which I need to run > PRISMS-PF I reinstalled the library but faced an

[deal.II] deal.II Installation Error

Dear deal.II community, In my attempt to install deal.II with p4est and mpi which I need to run PRISMS-PF I reinstalled the library but faced an error while installation at 50% described as : /home/pushkar/dealii-9.0.0/source/lac/trilinos_precondition_muelu.cc: fatal error:

Re: [deal.II] Re: DEAL.II INSTALLATION ERROR

Marc I did resolve the above issue as there was some problems with permissions while installing PETSC and I was installing it with root in /usr/lib/ directory which I installed without root privileges in /home/username/ directory and I did manage to compile the deal.II library with cmake.Anyways

Re: [deal.II] Re: DEAL.II INSTALLATION ERROR

Pushkar, would you check the `detailed.log` file in the build folder in which you configured deal.II with cmake and find the configuration details for PETSc. Does the PETSc folder specified in the log file contain the requested header files? The header files should be located in an include

Re: [deal.II] Re: DEAL.II INSTALLATION ERROR

Yes I did follow the above instructions but I am still facing the same issue . On Fri, Nov 27, 2020 at 3:53 AM Marc Fehling wrote: > Hi Pushkar! > > It appears the PETSc has been found during the configuration of deal.II > with cmake, but you can not find the header files of the PETSc libraries

[deal.II] Re: DEAL.II INSTALLATION ERROR

Hi Pushkar! It appears the PETSc has been found during the configuration of deal.II with cmake, but you can not find the header files of the PETSc libraries during compilation. Did you follow all instructions on how to interface deal.II to PETSc on this particular guide

[deal.II] DEAL.II INSTALLATION ERROR

Dear deal.II community, I am installing deal.II 9.0.0 as I wish to run PRIMS-PF on it wherein during the process I ran into certain issues as : In file included from /home/pushkar/dealii-9.0.0/include/deal.II/lac/petsc_parallel_vector.h:28, from

Re: [deal.II] Installation error on Haswell nodes on Cori at NERSC (failed AVX512 support)

Dear Martin, Thank you for your response. I deleted everything in my build directory and then it worked. I thought that deleting the CMakeCache.txt file and CMakeFiles would be enough (in other cases it has been), but evidently it wasn't enough here. Thanks again, Steve On Wednesday, July 10,

Re: [deal.II] Installation error on Haswell nodes on Cori at NERSC (failed AVX512 support)

Dear Steve, >From what I can see the failure is for the expand_instantiations script of deal.II, which is compiled as part of deal.II. It uses slightly different flags as the full install, but assuming that you either passed -xHASWELL or -xCORE-AVX2 to CMAKE_CXX_FLAGS it should not generate that

[deal.II] Installation error on Haswell nodes on Cori at NERSC (failed AVX512 support)

Hello, I'm trying to install deal.II on the Haswell nodes on Cori at NERSC using the Intel compiler. I'm using deal.II version 9.0, because support for a few of the function calls I make were dropped in v9.1 and I haven't had a chance to modify the sections of the code. In my CMake command, I'm

Re: [deal.II] Installation error

alternatively, you could run the same configuration on a workstation and copy the tmp/src and tmp/unpack to your cluster. Maybe you need the developer_mode as given by the last line of the config file as well - I'm not sure on that since I never run it without git access. Best Uwe On Friday,

Re: [deal.II] Installation error

On 2/22/19 4:20 AM, 刘泽 wrote: > fatal: unable to access 'https://github.com/dealii/dealii.git/': Unable > to communicate securely with peer: requested domain name does not match > the server's certificate. I suspect you are calling candi from a node on the cluster that does not have access to

[deal.II] Installation error

Dear all, I was trying to install dealii version 9.0.1 on department cluster using candi, Before installing it, I install openmpi-3.0.0-intel git clone https://github.com/dealii/candi cd candi ./candi.sh -j 12

[deal.II] Installation error

After Installing dealii, while running step-1 of the examples using - make run command, I get the following error, *[ 66%] Built target step-1[100%] Run step-1 with Debug configuration./step-1: symbol lookup error: /home/student/anaconda3/lib/libmkl_intel_lp64.so: undefined

Re: [deal.II] Installation error using Ubuntu 17.10 package (missing libsmumps.so)

Hi Matthias, Thanks! I'll pass along the advice to fetch and build the development version and otherwise wait for the 18.04 release. Best, Steve On Thursday, April 12, 2018 at 4:36:53 PM UTC-4, Matthias Maier wrote: > > Status update: > > - We missed the opportunity to do a rebuild for 17.10

Re: [deal.II] Installation error using Ubuntu 17.10 package (missing libsmumps.so)

Status update: - We missed the opportunity to do a rebuild for 17.10 [1] - In the upcoming 18.04 release everything should be fine again (release should be at the end of this month). Best, Matthias [1] https://bugs.launchpad.net/ubuntu/+source/deal.ii/+bug/1729454 -- The deal.II project

Re: [deal.II] Installation error using Ubuntu 17.10 package (missing libsmumps.so)

On Thu, Apr 12, 2018, at 14:48 CDT, Stephen DeWitt wrote: > Hi Matthias, > Ok, that makes sense. > > I think I have both libdeal.ii and libdeal.ii-dev, at least that's what > apt-get tells me if I try to install libdeal.ii-dev seperately, although I > haven't figured out

Re: [deal.II] Installation error using Ubuntu 17.10 package (missing libsmumps.so)

Hi Matthias, Ok, that makes sense. I think I have both libdeal.ii and libdeal.ii-dev, at least that's what apt-get tells me if I try to install libdeal.ii-dev seperately, although I haven't figured out how to use the dev version rather than the auto-detected release version. Thanks, Steve

Re: [deal.II] Installation error using Ubuntu 17.10 package (missing libsmumps.so)

Hi there, The problem is that deal.II's CMake system records the full link interface of all shared libraries - if a library changes location the package has to be rebuild (in Ubuntu). If this is indeed the case I will ask for this to happen. Did you install just the library libdeal.ii, or also

[deal.II] Installation error using Ubuntu 17.10 package (missing libsmumps.so)

Hello all, A PRISMS-PF user recently posted to our forum that he was having an issue with the deal.ii package he got through apt-get on Ubuntu 17.10. The issue seems to be related to a missing shared object file for MUMPS. I

[deal.II] installation error

Dear all, I am trying to install deal.II from the GIT repository with the following features: petsc_ver='3.6.0'; trilinos_ver='12.4.2'; git clone https://github.com/dealii/dealii.git dealii cmake \ -DTRILINOS_DIR=${install_dir}/trilinos-${trilinos_ver}

[deal.II] Installation error, please help, thx!

Hi, I've installed dealii before using the default step from README. This time, I am trying to install dealii with trilinos, but getting the following kind of errors during installation: " /usr/include/c++/6/tuple:648:21: error: no type named ‘type’ in ‘struct std::enable_if’

[deal.II] Installation error with c++ lib

Hi, I've installed dealii before using the default step by README. This time, I am trying to install dealii with trilinos, but getting the following kind of errors during installation: " /usr/include/c++/6/tuple:648:21: error: no type named ‘type’ in ‘struct std::enable_if’

Re: [deal.II] Installation error

Oh, I didn't realize there was a separate page for CMake. Thank you Jean-Paul, Wolfgang, the installation completed successfully! On Tuesday, 27 June 2017 01:13:59 UTC-4, Jean-Paul Pelteret wrote: > > Hi Lev, > > The information that you were looking for is in the CMake related > documentation

Re: [deal.II] Installation error

Hi Lev, The information that you were looking for is in the CMake related documentation . You need to pass the -DDEAL_II_FORCE_BUNDLED_THREADS=ON option at configuration time. I hope that this helps. Regards, J-P On Tuesday,

Re: [deal.II] Installation error

Hi Wolfgang, To be honest I don't think it's described in readme how to use the bundled version, or at least I couldn't find it. I tried adding the parameter -DTBB_INCLUDE_DIR="../bundled/tbb41_20130401oss/include/tbb" but cmake finds the system library at /usr/lib64/libtbb.so and uses it anyway,

Re: [deal.II] Installation error

Lev, /home/lev/aspect/dealii_debug/source/base/function_parser.cc:478:16: required from here /opt/rh/devtoolset-2/root/usr/include/c++/4.8.2/bits/stl_construct.h:75:7: error: use of deleted function ‘std::unique_ptr<_Tp, _Dp>::unique_ptr(const std::unique_ptr<_Tp, _Dp>&) [with _Tp =

[deal.II] Installation error

Hi, I'm trying to install the latest version of DealII but get the following error: /home/lev/aspect/dealii_debug/source/base/function_parser.cc:478:16: required from here /opt/rh/devtoolset-2/root/usr/include/c++/4.8.2/bits/stl_construct.h:75:7: error: use of deleted function

Re: [deal.II] Deal.ii installation Error

Hello Timo, Thanks for the reply. I didn't know about the compilation problems with older intel compilers. Yes, this problem was occurring with intel 2013 update 5 and openmpi 1.7.2 The problem is resolved when I switch to intel 2015 compiler and openmpi 1.8.4. This could be because of the

Re: [deal.II] Deal.ii installation Error

Rajat, first, is there a reason you are using deal.II 8.3.0, which is by now to big releases behind? Second, can is there a more modern MPI and compiler you can try? We have had many problems with intel compilers in the past, so I would try a gcc with mpich or openmpi unless you are sure in what

Re: [deal.II] installation Error while installing dealii-8.4.1:/usr/local/lib/liblapack.a: could not read symbols: Bad value

> /usr/bin/ld: /usr/local/lib/liblapack.a(sgeev.o): relocation R_X86_64_32 > against `.rodata' can not be used when making a shared object; recompile > with -fPIC > /usr/local/lib/liblapack.a: could not read symbols: Bad value This means that your local blas and lapack libraries in