Bug#1016880: fbasics: FTBFS on hppa - /usr/bin/ld: cannot find /usr/lib/gcc/hppa-linux-gnu/11/libgcc.a

2022-08-09 Thread Dirk Eddelbuettel
On 9 August 2022 at 10:27, John David Anglin wrote: | On 2022-08-08 8:17 p.m., Dirk Eddelbuettel wrote: | > Will I need an explicit depends or is gcc-12 now the default in unstable (as | > I suspect it is)? | It is now default. That's what I thought. I'll send up a -2 build.

Bug#1016880: fbasics: FTBFS on hppa - /usr/bin/ld: cannot find /usr/lib/gcc/hppa-linux-gnu/11/libgcc.a

2022-08-08 Thread Dirk Eddelbuettel
On 8 August 2022 at 19:53, John David Anglin wrote: | On 2022-08-08 3:32 p.m., Dirk Eddelbuettel wrote: | > The problem is the build now uses the gcc-12 toolchain. I think the R | > | build environment needs updating. | > | > Could you test with a local binary rebuild of r-base on

Bug#1016880: fbasics: FTBFS on hppa - /usr/bin/ld: cannot find /usr/lib/gcc/hppa-linux-gnu/11/libgcc.a

2022-08-08 Thread Dirk Eddelbuettel
On 8 August 2022 at 19:10, John David Anglin wrote: | Source: fbasics | Version: 3042.89.2-1 | Severity: normal | | Dear Maintainer, | | The fbasic build on hppa fails here: | gcc -shared -L/usr/lib/R/lib -o fBasics.so gld.o init.o nig.o -lblas -lgfortran -lm

Bug#1016688: dieharder -h segfaults

2022-08-05 Thread Dirk Eddelbuettel
On 5 August 2022 at 13:20, Milan Broz wrote: | Actually this patch is better, just displays usage and also check upper boundary (another segault with -d 10 ...) | | https://github.com/mbroz/dieharder/commit/7d60208c8a8beabe6d3d5a88399b83ebf03240a5 Thanks for both. I will try to fold

Bug#1013891: RM: foptions -- RoM: Retired upstream

2022-06-26 Thread Dirk Eddelbuettel
Package: ftp.debian.org Severity: normal The foptions package (binary: r-cran-foptions) is no longer on CRAN and can be removed from unstable as well. It had two dependencies (fasianoptions, fexoticoptions) which were already removed in #1013234 and #1013235. If needed, old versions remain at

Bug#1013235: RM: fexoticoptions -- RoM: Retired upstream

2022-06-19 Thread Dirk Eddelbuettel
Package: ftp.debian.org Severity: normal The fexoticoptions package (binary: r-cran-fexoticoptions) is no longer on CRAN and can be removed from unstable as well. If needed, old versions remain at https://cran.r-project.org/web/packages/fExoticOptions/index.html Dirk -- dirk.eddelbuettel.com

Bug#1013234: RM: fasionoptions -- RoM: Retired upstream

2022-06-19 Thread Dirk Eddelbuettel
Package: ftp.debian.org Severity: normal The fasianoptions package (binary: r-cran-fasianoptions) is no longer on CRAN and can be removed from unstable as well. If needed, old versions remain at https://cran.r-project.org/web/packages/fAsianOptions/index.html Dirk -- dirk.eddelbuettel.com |

Bug#1011476: beancounter: Please drop alternative dependency on libdbd-sqlite2-perl

2022-05-23 Thread Dirk Eddelbuettel
Hi Gregor, On 23 May 2022 at 21:05, gregor herrmann wrote: | Package: beancounter | Severity: minor | X-Debbugs-Cc: 998...@bugs.debian.org | | beancounter has "libdbd-pg-perl | libdbd-mysql-perl | | libdbd-odbc-perl | libdbd-sqlite3-perl | libdbd-sqlite2-perl" in | Depends, as it apparantly

Bug#1011044: libtiledb2.8 needs Breaks+Replaces: libtiledb2.7

2022-05-15 Thread Dirk Eddelbuettel
On 16 May 2022 at 04:48, Adrian Bunk wrote: | Package: libtiledb2.8 | Version: 2.8.3-2 | Severity: serious | | Unpacking libtiledb2.8:amd64 (2.8.3-2) ... | dpkg: error processing archive /var/cache/apt/archives/libtiledb2.8_2.8.3-2_amd64.deb (--unpack): | trying to overwrite

Bug#1010953: O: tiledb-py -- TileDB Python bindings

2022-05-15 Thread Dirk Eddelbuettel
Hi Nilesh, On 15 May 2022 at 07:48, Dirk Eddelbuettel wrote: | On 15 May 2022 at 14:10, Nilesh Patra wrote: | | Can I ask you to please take a look at my changes once? | | I will try that a little later. They look good. They are even more minimal than what I attempted (i.e. you knew to only

Bug#1011012: tiledb-r FTBFS with tiledb 2.8.3

2022-05-15 Thread Dirk Eddelbuettel
Adrian, On 15 May 2022 at 13:38, Adrian Bunk wrote: | Source: tiledb-r | Version: 0.12.0-1 | Severity: serious | Tags: ftbfs | | https://buildd.debian.org/status/logs.php?pkg=tiledb-r=0.12.0-1%2Bb1 | | ... | g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I../inst/include/

Bug#1010953: O: tiledb-py -- TileDB Python bindings

2022-05-15 Thread Dirk Eddelbuettel
Hi Nilesh, On 15 May 2022 at 14:10, Nilesh Patra wrote: | | Hi Dirk, | | On Fri, 13 May 2022 19:57:11 -0500 Dirk Eddelbuettel wrote: | > As noted in a mail to debian-python [1], the tiledb-py package is creating a | > few issues I do not currently have time to work through. | | I sa

Bug#1010953: O: tiledb-py -- TileDB Python bindings

2022-05-13 Thread Dirk Eddelbuettel
Package: wnpp Severity: normal As noted in a mail to debian-python [1], the tiledb-py package is creating a few issues I do not currently have time to work through. I will continue to look after the tiledb package, and after the R bindings in package tiledb-r. If someone can devote some time to

Bug#1009224: Using different R versions in parallel with Debian

2022-04-11 Thread Dirk Eddelbuettel
On 11 April 2022 at 18:40, Paul Menzel wrote: | I think, I see the misunderstanding. I thought the single quotes meant, | that *simpler* and *fancier* are commands for the mentioned purposes – | which made sense to me, as the end both on *r* (simpleR and fancieR). | Now I think they are just

Bug#1009224: Using different R versions in parallel with Debian

2022-04-09 Thread Dirk Eddelbuettel
On 9 April 2022 at 17:30, Charles Plessy wrote: | Le Sat, Apr 09, 2022 at 10:19:17AM +0200, Paul Menzel a écrit : | > | > Thank you very much for packaging and maintaining R and related software in | > Debian. Some of our scientists use Debian and its R packages. Sometimes | > they’d like to

Bug#1009224: Using different R versions in parallel with Debian

2022-04-09 Thread Dirk Eddelbuettel
Hallo Paul, On 9 April 2022 at 10:19, Paul Menzel wrote: | Package: r-base-core | Version: 4.1.3.20220324-1 | Severity: wishlist | | Dear Debian R maintainer, | | Thank you very much for packaging and maintaining R and related software | in Debian. Some of our scientists use Debian and its R

Bug#1009212: date does not respect timezone format

2022-04-08 Thread Dirk Eddelbuettel
reassign 1009212 coreutils thanks You reporeted this against source package 'date' which is CRAN package date at https://cran.r-project.org/package=date. You likely meant the command 'date' from source package coreutils. Dirk On 8 April 2022 at 23:43, mastrboy wrote: | Source: date |

Bug#1007032: r-cran-minqa: please consider upgrading to 3.0 source format

2022-03-12 Thread Dirk Eddelbuettel
-Browser: and Vcs-Git: * debian/compat: Removed * debian/control: Switch from cdbs to dh-r * debian/rules: Idem * debian/watch: Update to https -- Dirk Eddelbuettel Sat, 12 Mar 2022 21:03:53 -0600 r-cran-minqa (1.2.4-1) unstable; urgency=low * New upstream release

Bug#1006652: ITP: r-cran-tiledb -- R Interface to the TileDB Storage Engine

2022-03-01 Thread Dirk Eddelbuettel
Package: wnpp Owner: Dirk Eddelbuettel Severity: wishlist * Package name: r-cran-tiledb Version : 0.11.0 Upstream Author : TileDB Inc * URL or Web page : https://github.com/TileDB-Inc/TileDB-R * License : MIT Description : R Interface to the TileDB Storage Engine

Bug#1006415: FTBFS with capnproto 0.9.1

2022-02-26 Thread Dirk Eddelbuettel
On 25 February 2022 at 18:39, Tom Lee wrote: | So the tiledb upstream sources include *pre-generated *capnproto sources | that were generated using 0.8.0. The *update-serialization* target will Indeed! I forgot about that. TileDB has a habit of (strongly) enforcing third-party dependencies,

Bug#1006415: FTBFS with capnproto 0.9.1

2022-02-26 Thread Dirk Eddelbuettel
Hi Tom, On 25 February 2022 at 13:14, Tom Lee wrote: | Thanks for giving it a shot. Surprised to hear the patch didn't apply | cleanly, believe I worked directly from the source pulled via | | dget -a http://deb.debian.org/debian/pool/main/t/tiledb/tiledb_2.6.2-2.dsc Would it be possible for

Bug#1006415: FTBFS with capnproto 0.9.1

2022-02-25 Thread Dirk Eddelbuettel
Tom, Sad news. The build fails for me in unstable as is (using an updated pbuilder chroot). I log these to file and what I see is cd /build/tiledb-2.6.2/obj-x86_64-linux-gnu/tiledb/tiledb && /usr/bin/cc -DFMT_LOCALE -DFMT_SHARED -DSPDLOG_COMPILED_LIB -DSPDLOG_FMT_EXTERNAL

Bug#1006415: FTBFS with capnproto 0.9.1

2022-02-25 Thread Dirk Eddelbuettel
Tom, The patch does not apply cleanly to the sources. It is also not unified. A bit weird. Will patch by hand, and regenerate with dpkg-source --commit. Dirk -- https://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org

Bug#1006415: FTBFS with capnproto 0.9.1

2022-02-25 Thread Dirk Eddelbuettel
Hi Tom, On 24 February 2022 at 20:49, Tom Lee wrote: | Source: tiledb | Version: 2.6.2 | Severity: important | Tags: bookworm sid | X-Debbugs-CC: tmanc...@debian.org | | Hi there, | | tiledb fails to build against capnproto 0.9.1, largely because of the | hard-coded version number in the

Bug#1001589: I'm stuck too

2022-02-02 Thread Dirk Eddelbuettel
On 2 February 2022 at 08:53, Emmanuel Charpentier wrote: | For information : this bug has bitten me too : | | I run testing, R (from testing), a bucketfull of R packages (mostly | from R repositories) and sagemath (installed from source). | | Recently, the "energy" R packages started to be

Bug#1004591: ITP: r-cran-simplermarkdown -- GNU R package with simple engine for generating reports

2022-01-30 Thread Dirk Eddelbuettel
Package: wnpp Owner: Dirk Eddelbuettel Severity: wishlist * Package name: r-cran-simplermarkdown Version : 0.0.4 Upstream Author : Jan van der Laan * URL or Web page : https://cran.r-project.org/package=simplermarkdown * License : GPL (>= 3) Description : GN

Bug#931519: 931519 resolved

2022-01-28 Thread Dirk Eddelbuettel
On 29 January 2022 at 10:38, Paul Wise wrote: | Control: fixed -1 4.0.3 | | On Fri, 2022-01-28 at 20:07 -0600, Dirk Eddelbuettel wrote: | | > Per email by Graham from 14 Nov 2020 this has been resolved. | | Resolved upstream in 2020 but not in Debian until 2021. Correct. Graham (as aut

Bug#1003540: gsl-doc: please update to 2.7.1

2022-01-12 Thread Dirk Eddelbuettel
On 13 January 2022 at 02:29, Andreas Beckmann wrote: | On 11/01/2022 17.54, Dirk Eddelbuettel wrote: | > On 11 January 2022 at 17:31, Andreas Beckmann wrote: | > | Package: gsl-doc | > | Version: 2.6-2 | > | Severity: serious | > | > Why would that be a serious bug rather no

Bug#1003540: gsl-doc: please update to 2.7.1

2022-01-11 Thread Dirk Eddelbuettel
On 11 January 2022 at 17:31, Andreas Beckmann wrote: | Package: gsl-doc | Version: 2.6-2 | Severity: serious Why would that be a serious bug rather normal or even minor? It's a bit of a manual process becuase of the dfsg dance and manual ops. And there generally is not that much that changes

Bug#1003193: Switch maintainer?

2022-01-06 Thread Dirk Eddelbuettel
On 6 January 2022 at 19:48, Adam Cécile wrote: | On 1/5/22 10:39 PM, Dirk Eddelbuettel wrote: | > Hi Adam, | > | > Would you be ok with me more formally adopting the package as maintainer? | | Hello, | | Absolutely no issue on my side. Who could be a better maintainer than | the

Bug#1003193: Switch maintainer?

2022-01-05 Thread Dirk Eddelbuettel
Package: tiledb Severity: normal Hi Adam, Would you be ok with me more formally adopting the package as maintainer? Dirk -- https://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org

Bug#1003119: RM: rsprng -- RoM: Retired upstream years ago

2022-01-04 Thread Dirk Eddelbuettel
Package: ftp.debian.org Severity: normal The rsprng package (binary: r-cran-rsprng) was the first package for R offering a parallel RNG stream suitable for parallel simulation. We now have better ones, including in Debian, and this one which had been retired upstream years ago can now move

Bug#1002999: ftp.debian.org: RM: cairodevice -- ROM: Retired upstream

2022-01-02 Thread Dirk Eddelbuettel
retitle -1 RM: r-cran-cairodevice -- ROM: Retired upstream thanks Somehow I mess the form up more often than not with the emacs helper debian-bug being a little out of whack. Sorry about that. Dirk On 2 January 2022 at 09:00, Dirk Eddelbuettel wrote: | | Package: ftp.debian.org | Severity

Bug#1003000: RM: rgtk2 -- ROM: Retired upstream

2022-01-02 Thread Dirk Eddelbuettel
Package: ftp.debian.org Severity: normal The RGtk2 package (source rgtk2 for us, binary r-cran-rgtk2) was an important package in its day in bringing a modern and pretty UI framework to R across different OS, and I looked after it for 15 years. It never made the move to Gtk3 though, and usage

Bug#1002999: ftp.debian.org: RM: cairodevice -- ROM: Retired upstream

2022-01-02 Thread Dirk Eddelbuettel
Package: ftp.debian.org Severity: normal The cairoDevice package (source cairodevice for us, binary r-cran-cairodevice) was the first 'Cairo' device for R, it has been replaced by the actively maintained 'Cairo' package (r-cran-cairo for us). It was now retired at CRAN. We should remove it

Bug#1002837: tiledb: diff for NMU version 1.7.7-1.2

2021-12-31 Thread Dirk Eddelbuettel
Ok, we are now at a place where the package is tamed somewhat: - a lot of the smaller architectures did not build for 1.7.7-4 - five larger ones (all 64-bit based AFAICT) did - so I hard-wired these explicitly in Architecture: All green now for the ones attempted:

Bug#1002907: RM: r-cran-rggobi -- ROM: retired upstream

2021-12-31 Thread Dirk Eddelbuettel
Package: ftp.debian.org Severity: normal The `rggobi` package for R was a front-end to the `ggobi` interactive visualization tool (which we still have). But `rggobi` development ceased, and the package has been off CRAN since July of 2020. We should remove it too. There is only one

Bug#1002648: RM: r-cran-multicore -- ROM: retired upstream years ago

2021-12-30 Thread Dirk Eddelbuettel
: | | On Sun, 26 Dec 2021 10:20:51 -0600 Dirk Eddelbuettel wrote: | | > | | > Package: ftp.debian.org | | > Severity: normal | | > | | > The 'multicore' package for R was an early extension (during 2009 to 2011) | | to | | > support process-parallel work. Its key parts (especially

Bug#1002837: tiledb: diff for NMU version 1.7.7-1.2

2021-12-30 Thread Dirk Eddelbuettel
Hi Adam, On 30 December 2021 at 11:12, Adam Cécile wrote: | Sure, I was suggesting adding you directly to uploaders because the | package is maintained on Salsa, sadly I see we both missed each other there: | | https://salsa.debian.org/acecile-guest/tiledb |

Bug#1002837: tiledb: diff for NMU version 1.7.7-1.2

2021-12-29 Thread Dirk Eddelbuettel
Couldn't resist an attempt to send in an 1.7.7-3 attempt but still seeing too many unit test failures. Very strange as this works for me on amd64 :-/ Adam, how would you feel about an update to 2.5.3 and catch2 (and no more tbb-dev) ? Would you be ok with me sending that up as NMU? Dirk --

Bug#1002837: tiledb: diff for NMU version 1.7.7-1.2

2021-12-29 Thread Dirk Eddelbuettel
Thank you both for quick thumbs-up! 1.7.7-1.2 was just shipped, fingers crossed about how it'll do with the builders. Dirk -- https://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org

Bug#1002837: tiledb: diff for NMU version 1.7.7-1.2

2021-12-29 Thread Dirk Eddelbuettel
, 2021 5:42:33 PM GMT+01:00, Dirk Eddelbuettel wrote: | >Package: tiledb | >Version: 1.7.7-1.1 | >Severity: normal | >Tags: patch pending | > | >Dear maintainer, | > | >I have prepared an NMU for tiledb (versioned as 1.7.7-1.2) and | >can uploaded it to DELAYED/10. Pleas

Bug#1002837: tiledb: diff for NMU version 1.7.7-1.2

2021-12-29 Thread Dirk Eddelbuettel
for a more minimal build, also remove sphinx + * debian/control: Remove Build-Depends: on hdfs + * debian/control: Set Standards-Version: 2.6.0 + + -- Dirk Eddelbuettel Wed, 29 Dec 2021 09:55:15 -0600 + tiledb (1.7.7-1.1) unstable; urgency=medium * Non-maintainer upload. * Source-only upload

Bug#1002794: Package removed upstream

2021-12-28 Thread Dirk Eddelbuettel
Package: r-cran-rsgcc Severity: normal rsgcc has been off CRAN for a while: https://cran.r-project.org/web/packages/rsgcc/index.html It would be nice if you could retire the package so that we can also retire 'r-cran-gwidgetsrgtk2' which was also remove from CRAN

Bug#1002512: Please remove Build-Depends on r-cran-multicore

2021-12-26 Thread Dirk Eddelbuettel
This bug now blocks resolution of #1002648 for the removal of r-cran-multicore. It would be nice if you could adjust the (apparently also dead upstream) package r-other-mott-happy to just rely on package 'parallel' which is included in R. Thanks, Dirk -- https://dirk.eddelbuettel.com |

Bug#1002650: RM: r-omegahat-xmlrpc -- ROM: retired upstream nine years ago

2021-12-26 Thread Dirk Eddelbuettel
Package: ftp.debian.org Severity: normal The OmegaHat project was once (around 2000) aiming to write 'the next R'. That never happend. But R Core member Duncan Temple Lang maintained a repository for several years with a number of extension packages. But it ceased to exist years ago and

Bug#1002648: RM: r-cran-multicore -- ROM: retired upstream years ago

2021-12-26 Thread Dirk Eddelbuettel
Package: ftp.debian.org Severity: normal The 'multicore' package for R was an early extension (during 2009 to 2011) to support process-parallel work. Its key parts (especially those that matter for us on Linux) were replaced / rewritten many years ago by package 'parallel' which is a part of

Bug#1002525: r-cran-tmb: autopkgtest needs update for new version of rmatrix: Package version inconsistency detected.

2021-12-25 Thread Dirk Eddelbuettel
Hi Nilesh, On 26 December 2021 at 00:20, Nilesh Patra wrote: | control: reassign -1 r-cran-tmb/1.7.22-1 | | Hi Dirk, | | On Thu, 23 Dec 2021 14:30:10 -0600 Dirk Eddelbuettel wrote: | > passfail | > | rmatrixfrom testing1.4-0-1 |

Bug#1002525: r-cran-tmb: autopkgtest needs update for new version of rmatrix: Package version inconsistency detected.

2021-12-23 Thread Dirk Eddelbuettel
On 23 December 2021 at 20:03, Paul Gevers wrote: | Source: r-cran-tmb | Version: 1.7.22-1 | Severity: serious | X-Debbugs-CC: debian...@lists.debian.org, rmat...@packages.debian.org | Tags: sid bookworm | User: debian...@lists.debian.org | Usertags: needs-update | Control: affects -1 src:rmatrix

Bug#1002512: Please remove Build-Depends on r-cran-multicore

2021-12-23 Thread Dirk Eddelbuettel
Package: r-other-mott-happy.hbrem Severity: normal I am currently cleaning up a little and removing a handful of r-cran-* packages that have vanished from CRAN years ago. One of those is 'multicore' which was subsumed in package 'parallel' which is part of base R. Package

Bug#1002294: RM: r-cran-int64 -- ROM: retired upstream nine years ago

2021-12-21 Thread Dirk Eddelbuettel
Package: ftp.debian.org Severity: normal The 'int64' package for R was one of two approaches to 'retro-fit' an int64_t into R (which has a limited set of basetypes). It failed and as https://cran.r-project.org/package=int64 was orphaned in 2012 and formally archived in 2013. We kept it

Bug#1001892: ftp.debian.org:

2021-12-19 Thread Dirk Eddelbuettel
retitle 1001892 RM: r-cran-hdf5 -- ROM: retired upstream twelve years ago quit Setting a better / correct title. Dirk On 18 December 2021 at 08:10, Dirk Eddelbuettel wrote: | | Package: ftp.debian.org | Severity: normal | | Winthin the R system, hdf5 packages have a difficult history

Bug#1001892: ftp.debian.org: RM: r-cran-hdf5 -- ROM: retired upstream twelve years ago

2021-12-18 Thread Dirk Eddelbuettel
Package: ftp.debian.org Severity: normal Winthin the R system, hdf5 packages have a difficult history. This package was one of the earlier ones (earliest?) and was maintained from 2000 to 2009. I packaged it in 2005, and it has served us well. These days the BioConductor package rhdf5 is a

Bug#996033: ftp.debian.org: ROM: its -- retired upstream five years ago

2021-12-15 Thread Dirk Eddelbuettel
retitle 996033 RM: its -- ROM: retired upstream five years ago quit Setting a better / correct title. Dirk On 18 November 2021 at 10:06, Dirk Eddelbuettel wrote: | | reassign 996033 ftp.debian.org | quit | | I must have been absent-minded when I filed this as I got the Subject: right

Bug#1001589: libgsl25: Can't be upgraded to 2.7+dfsg-2

2021-12-13 Thread Dirk Eddelbuettel
Hi Tobias, Thanks for piping in! On 13 December 2021 at 16:42, Tobias Hansen wrote: | On 12/13/21 4:30 PM, Dirk Eddelbuettel wrote: | > Hi Alexandre, | > | > On 13 December 2021 at 09:08, Alexandre Lymberopoulos wrote: | > | Hi there, Dirk! | > | | > | I see that, libgslbl

Bug#1001589: libgsl25: Can't be upgraded to 2.7+dfsg-2

2021-12-13 Thread Dirk Eddelbuettel
ple email to the maintainer. Cheers, Dirk | Best, Alexandre | | On Dec 12 2021, Dirk Eddelbuettel wrote: | > | > PS As a follow-up, it also looks like the Debian aggregation pages think | > everything should be fine: | > | > https://packages.debian.org/sid/libgslcblas0 | > |

Bug#1001589: libgsl25: Can't be upgraded to 2.7+dfsg-2

2021-12-12 Thread Dirk Eddelbuettel
PS As a follow-up, it also looks like the Debian aggregation pages think everything should be fine: https://packages.debian.org/sid/libgslcblas0 Maybe you just has bad luck with a mirror, or hit a mirro sync? Dirk -- https://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org

Bug#1001589: libgsl25: Can't be upgraded to 2.7+dfsg-2

2021-12-12 Thread Dirk Eddelbuettel
Salut Alexandre, On 12 December 2021 at 14:47, Alexandre Lymberopoulos wrote: | Package: libgsl25 | Version: 2.6+dfsg-2 | Severity: normal | | Dear Maintainer, | | Trying to upgrade all packages here, I see myself in a dependence | conflict apparently without solution. Library libgsl25

Bug#998192: release.debian.org: Transition for gsl-2.7 / libgsl26

2021-12-08 Thread Dirk Eddelbuettel
On 8 December 2021 at 12:16, Sebastian Ramacher wrote: | gsl now migrated and libgsl25 got removed from testing. Fantastic! Thanks to you and to Patrick (CC'ed again) and we're back to where we once were (GSL updates upstream, I can update without fuss or formal transitions) but now we are

Bug#998192: release.debian.org: Transition for gsl-2.7 / libgsl26

2021-12-06 Thread Dirk Eddelbuettel
Hi Mattia and Sebastian, On 6 December 2021 at 22:44, Mattia Rizzolo wrote: | Yes! See https://wiki.debian.org/BuildProfileSpec for the | documentation. | | Unfortunately there have been a few troubles getting a formal and good | specifical text that was "good enough" for the Debian Policy.

Bug#998192: release.debian.org: Transition for gsl-2.7 / libgsl26

2021-12-06 Thread Dirk Eddelbuettel
Hi Sebastian, On 6 December 2021 at 21:58, Sebastian Ramacher wrote: | gsl needs another upload. It currently lists libgsl-prof as package that | should be built, but it isn't. I've been told that in the past this has | been worked around by manually changing the .dsc before uploading. It has

Bug#998192: release.debian.org: Transition for gsl-2.7 / libgsl26

2021-12-02 Thread Dirk Eddelbuettel
On 2 December 2021 at 15:57, Dirk Eddelbuettel wrote: | Yep. It's in the queue by now. I sometimes forget if an experimental -> | unstable passage does or does not need an orig.tar.gz to go along or not but | the bots will tell me if so :) And by now in unstable. Thanks so much for look

Bug#998192: release.debian.org: Transition for gsl-2.7 / libgsl26

2021-12-02 Thread Dirk Eddelbuettel
On 2 December 2021 at 22:39, Sebastian Ramacher wrote: | On 2021-12-02 15:11:20, Dirk Eddelbuettel wrote: | > | > On 2 December 2021 at 20:55, Sebastian Ramacher wrote: | > | gsl cleared NEW thanks to ta. So this should be good to go. | > | | > | Please go ahead with the upl

Bug#998192: release.debian.org: Transition for gsl-2.7 / libgsl26

2021-12-02 Thread Dirk Eddelbuettel
On 2 December 2021 at 20:55, Sebastian Ramacher wrote: | gsl cleared NEW thanks to ta. So this should be good to go. | | Please go ahead with the upload to unstable. Will do. Without any other requirements, correct? I.e. standard upload which thanks to Patrick's work will be around a new

Bug#998192: release.debian.org: Transition for gsl-2.7 / libgsl26

2021-12-02 Thread Dirk Eddelbuettel
On 1 December 2021 at 21:47, Patrick Alken wrote: | Ok please send along the patches. Sure thing. They are actually 'in the open' as we (== Debian devs) these days have most / all work in git(-lab via our instance at salsa.debian.org). See this directory and note that the 'series' file governs

Bug#998192: release.debian.org: Transition for gsl-2.7 / libgsl26

2021-12-01 Thread Dirk Eddelbuettel
On 1 December 2021 at 21:41, Sebastian Ramacher wrote: | Indeed, it will need a trip through NEW. So going via experimental would | be appreciated. But, once it passed NEW, you can then immediatly follow | up with the upload to unstable. I will take care of the binNMUs of the | reverse

Bug#998192: release.debian.org: Transition for gsl-2.7 / libgsl26

2021-12-01 Thread Dirk Eddelbuettel
On 1 December 2021 at 09:45, Sebastian Ramacher wrote: | On 2021-11-30 22:43:11 -0700, Patrick Alken wrote: | > All, I have uploaded a new GSL release (2.7.1) which I hope fixes the | > libtool version numbers Patrick, Big big thank you! (And I missed this email yesterday) | Thank you! | |

Bug#998192: release.debian.org: Transition for gsl-2.7 / libgsl26

2021-11-23 Thread Dirk Eddelbuettel
On 22 November 2021 at 09:08, Patrick Alken wrote: | Hi all, sorry for all this trouble. I will try to make a new GSL release | with the correct numbers. Much appreciate it! Sebastian, we'll then run a new transition with gsl 2.8 (or whichever version number it will be) and its new somajor.

Bug#998192: release.debian.org: Transition for gsl-2.7 / libgsl26

2021-11-21 Thread Dirk Eddelbuettel
Hi Patrick, Can you please chime in (as you did in the earlier exchanges when Sebastian explained to us how to set valus triplet for libtool via configure.ac) ? On 21 November 2021 at 23:00, Sebastian Ramacher wrote: | On 2021-11-09 12:54:44 -0600, Dirk Eddelbuettel wrote: | > | >

Bug#996033: ftp.debian.org: ROM: its -- retired upstream five years ago

2021-11-18 Thread Dirk Eddelbuettel
reassign 996033 ftp.debian.org quit I must have been absent-minded when I filed this as I got the Subject: right but use the package itself instead of ftp.debian.org. My bad! Dirk On 10 October 2021 at 12:04, Dirk Eddelbuettel wrote: | | Severity: normal | Package: its | | The its

Bug#996033: ftp.debian.org: ROM: its -- retired upstream five years ago

2021-11-18 Thread Dirk Eddelbuettel
reassign ftp.debian.org quit I must have been absent-minded when I filed this as I got the Subject: right but use the package itself instead of ftp.debian.org. My bad! Dirk On 10 October 2021 at 12:04, Dirk Eddelbuettel wrote: | | Severity: normal | Package: its | | The its package

Bug#999231: beancounter: missing required debian/rules targets build-arch and/or build-indep

2021-11-10 Thread Dirk Eddelbuettel
On 9 November 2021 at 22:28, Lucas Nussbaum wrote: | Source: beancounter | Version: 0.8.10 | Severity: important | Justification: Debian Policy section 4.9 | Tags: bookworm sid | User: debian...@lists.debian.org | Usertags: missing-build-arch-indep | | Dear maintainer, | | Your package does

Bug#998192: release.debian.org: Transition for gsl-2.7 / libgsl26

2021-11-09 Thread Dirk Eddelbuettel
On 8 November 2021 at 22:14, Sebastian Ramacher wrote: | Control: tags -1 moreinfo | Control: forwarded -1 https://release.debian.org/transitions/html/auto-gsl.html | | On 2021-10-31 14:29:40 -0500, Dirk Eddelbuettel wrote: | > | > Package: release.debian.org | > Severity: normal

Bug#998331: r-cran-tzdb: Embedded Howard Hinnant Date library

2021-11-02 Thread Dirk Eddelbuettel
On 2 November 2021 at 16:09, Andrea Pappacoda wrote: | Control: close -1 | | Thanks for your fast response. | | As you might have guessed I'm not really experienced in Debian | packaging, and I didn't know this was acceptable. | | I have no complaints then, I'm closing this :) | | Thanks

Bug#998331: r-cran-tzdb: Embedded Howard Hinnant Date library

2021-11-02 Thread Dirk Eddelbuettel
On 2 November 2021 at 15:43, Andrea Pappacoda wrote: | Source: r-cran-tzdb | Severity: normal | | -BEGIN PGP SIGNED MESSAGE- | Hash: SHA256 | | Dear Maintainer, | | I'm currently working to package the "date" library from Howard Hinnant, you | can see the ITP here:

Bug#998230: gsl-doc: LaTeX Error: File `tgtermes.sty' not found.

2021-11-01 Thread Dirk Eddelbuettel
On 1 November 2021 at 12:38, Andreas Beckmann wrote: | Source: gsl-doc | Version: 2.6-1 | Severity: serious | Tags: ftbfs sid bookworm | Justification: fails to build from source | | Hi, | | gsl-doc cannot be built any longer in sid: | | Latexmk: applying rule 'pdflatex'... | This is pdfTeX,

Bug#998192: release.debian.org: Transition for gsl-2.7 / libgsl26

2021-10-31 Thread Dirk Eddelbuettel
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: transition GNU GSL 2.7 was release a few months ago, and we now realised (in the discussion of #993324 which also included upstream) that the upstream libtool instruction were in error by _not_

Bug#998064: sm: fails to display text containing letter 'e' due to errors in libfreetype after upgrade

2021-10-29 Thread Dirk Eddelbuettel
On 29 October 2021 at 18:14, Paul Wise wrote: | Package: sm, libfreetype6 | Version: 0.26-1, 2.11.0+dfsg-1 | Severity: important | File: /usr/games/sm | Usertags: regression Maintainer of _source package_ sm here: bad habit, 15 years ago binary packages like r-cran-sm used their upstream source

Bug#993324: libgsl25: ABI breakage: removed symbol gsl_linalg_QR_TR_decomp

2021-10-24 Thread Dirk Eddelbuettel
On 24 October 2021 at 11:38, Sebastian Ramacher wrote: | On 2021-10-23 19:44:49 -0500, Dirk Eddelbuettel wrote: | > | > I have now 'patched' the upstream setting of GSL_AGE, this results (as kindly | > analysed by Sebastian) in new sonames '26' so I prepared a new version which | &g

Bug#993324: libgsl25: ABI breakage: removed symbol gsl_linalg_QR_TR_decomp

2021-10-23 Thread Dirk Eddelbuettel
I have now 'patched' the upstream setting of GSL_AGE, this results (as kindly analysed by Sebastian) in new sonames '26' so I prepared a new version which just went out to unstable. Unless I am mistaken, I need to get the release team on board for a proper transition. Correct? Dirk --

Bug#993324: libgsl25: ABI breakage: removed symbol gsl_linalg_QR_TR_decomp

2021-10-16 Thread Dirk Eddelbuettel
On 16 October 2021 at 17:50, Sebastian Ramacher wrote: | On 2021-10-15 13:54:07 -0500, Dirk Eddelbuettel wrote: | > | > On 15 October 2021 at 20:35, Sebastian Ramacher wrote: | > | On 2021-10-15 10:38:48 -0500, Dirk Eddelbuettel wrote: | > | > | > | > Turns out this was fu

Bug#993324: libgsl25: ABI breakage: removed symbol gsl_linalg_QR_TR_decomp

2021-10-15 Thread Dirk Eddelbuettel
On 15 October 2021 at 20:35, Sebastian Ramacher wrote: | On 2021-10-15 10:38:48 -0500, Dirk Eddelbuettel wrote: | > | > Turns out this was fully my fault. The 2.7 release sets the SO number to 26, | > and I didn't use that. | | No, it doesn't. gsl 2.7 has current=26 and age=1

Bug#993324: libgsl25: ABI breakage: removed symbol gsl_linalg_QR_TR_decomp

2021-10-15 Thread Dirk Eddelbuettel
Turns out this was fully my fault. The 2.7 release sets the SO number to 26, and I didn't use that. So a new package will be forthcoming, and likely need a transition. That means I should upload to experimental first, right, to then request the transition? (I'll read up on it later today as a

Bug#993324: libgsl25: ABI breakage: removed symbol gsl_linalg_QR_TR_decomp

2021-10-15 Thread Dirk Eddelbuettel
Graham, On 15 October 2021 at 13:34, Graham Inggs wrote: | > Yes. And I follow upstream. They didn't change :-/ | | Right, so please speak to your upstream. Dropping (or renaming) a Done. Looks like a 2.8 release is coming, so maybe the soname gets cleaned up there and we get to do (yet

Bug#993324: libgsl25: ABI breakage: removed symbol gsl_linalg_QR_TR_decomp

2021-10-14 Thread Dirk Eddelbuettel
On 14 October 2021 at 23:20, Sebastian Ramacher wrote: | On 2021-10-14 15:52:03 -0500, Dirk Eddelbuettel wrote: | > | > Hi Sebastian, | > | > On 14 October 2021 at 22:46, Sebastian Ramacher wrote: | > | Hi Dirk | > | | > | On 2021-08-30 16:27:49 -0500, Di

Bug#993324: libgsl25: ABI breakage: removed symbol gsl_linalg_QR_TR_decomp

2021-10-14 Thread Dirk Eddelbuettel
Hi Sebastian, On 14 October 2021 at 22:46, Sebastian Ramacher wrote: | Hi Dirk | | On 2021-08-30 16:27:49 -0500, Dirk Eddelbuettel wrote: | > | > On 30 August 2021 at 23:42, Niko Tyni wrote: | > | Package: libgsl25 | > | Version: 2.7+dfsg-2 | > | Control: affects -1 l

Bug#996451: src:gsl: fails to migrate to testing for too long: unresolved RC bug (found by autopkgtest breakage)

2021-10-14 Thread Dirk Eddelbuettel
On 14 October 2021 at 10:55, Paul Gevers wrote: | Source: gsl | Version: 2.6+dfsg-2 | Severity: serious | Control: close -1 2.7+dfsg-2 | Tags: sid bookworm | User: release.debian@packages.debian.org | Usertags: out-of-sync | | Dear maintainer(s), | | The Release Team considers packages

Bug#996033: ftp.debian.org: ROM: its -- retired upstream five years ago

2021-10-10 Thread Dirk Eddelbuettel
Severity: normal Package: its The its package was retired from CRAN five years ago [1] upon the request of its original author (who is a friend), but I kept it in Debian because it was generally useful. However, as time and packaging standards move on (while the package remains frozen) it is

Bug#991859: BioConductor MOFA2 needs basilisk - which installs a conda environment

2021-09-20 Thread Dirk Eddelbuettel
On 20 September 2021 at 07:50, Andreas Tille wrote: | On Sun, Sep 19, 2021 at 03:45:57PM -0500, Dirk Eddelbuettel wrote: | > | > | I'm thinking about a "fake-basilisk" like r-cran-bh or r-bioc-zlib. | > | > I had a similar thought. I am also f

Bug#991859: BioConductor MOFA2 needs basilisk - which installs a conda environment

2021-09-19 Thread Dirk Eddelbuettel
On 19 September 2021 at 16:09, Andreas Tille wrote: | On Sun, Sep 19, 2021 at 05:31:14PM +0530, Nilesh Patra wrote: | > | > But I do wonder if more packages in future might as well end up needing basilisk too. | | I'm thinking about a "fake-basilisk" like r-cran-bh or r-bioc-zlib. I had a

Bug#993750: rgtk2: FTBFS on s390x: smoke-test failure: caught segfault

2021-09-14 Thread Dirk Eddelbuettel
Hi Philipp, Hi Simon, If we have no resolution on this I will have no other way than to re-upload r-cran-rgtk2 with a build exclusion for s390 as I now have an autoremoval notice for it (and another package I look after than depends on it). Or do we have other/better options? Dirk --

Bug#993750: rgtk2: FTBFS on s390x: smoke-test failure: caught segfault

2021-09-06 Thread Dirk Eddelbuettel
On 6 September 2021 at 09:39, Simon McVittie wrote: | On Sun, 05 Sep 2021 at 20:04:55 -0500, Dirk Eddelbuettel wrote: | > Please explain what a smoke-test failure is. | | Sorry, I thought this was a common term. | | A smoke-test for hardware: plug in the device and see whether smoke | co

Bug#993750: rgtk2: FTBFS on s390x: smoke-test failure: caught segfault

2021-09-05 Thread Dirk Eddelbuettel
Also: No other R packages here. Maybe something off with gtk2? Build-Depends: debhelper (>= 10), dh-r (>= 20180615), \ r-base-dev (>= 3.6.1), libgtk2.0-dev (>= 2.10.12), \ libglade2-dev, libpango1.0-dev, libcairo2-dev Dirk -- https://dirk.eddelbuettel.com | @eddelbuettel |

Bug#993750: rgtk2: FTBFS on s390x: smoke-test failure: caught segfault

2021-09-05 Thread Dirk Eddelbuettel
On 6 September 2021 at 00:46, Simon McVittie wrote: | Source: rgtk2 | Version: 2.20.36-2 | Severity: serious | Tags: ftbfs bookworm sid | Justification: fails to build from source (but built successfully in the past) | X-Debbugs-Cc: debian-s...@lists.debian.org | User:

Bug#993349: r-cran-bh is at version 1.74.0-1 but DESCRIPTION remains at 1.66.0

2021-08-31 Thread Dirk Eddelbuettel
On 31 August 2021 at 15:36, Andreas Tille wrote: | I think cheating with different Debian versions is one thing but IMHO | the versions inside the package (I mean Debian package version and the | version inside DESCRIPTION) should match no matter what actual libboost | version is in Debian.

Bug#993349: fixed

2021-08-31 Thread Dirk Eddelbuettel
s (reply to Dirk Eddelbuettel ). | [...] | > -BEGIN PGP SIGNED MESSAGE- | > Hash: SHA256 | > | > Format: 1.8 | > Date: Tue, 31 Aug 2021 06:40:29 -0500 | > Source: r-cran-bh | > Architecture: source | > Version: 1.74.0-2 | > Distribution: unstable | > Urgency: mediu

Bug#993349: r-cran-bh is at version 1.74.0-1 but DESCRIPTION remains at 1.66.0

2021-08-31 Thread Dirk Eddelbuettel
-12 | Author: Dirk Eddelbuettel, John W. Emerson and Michael J. Kane | Maintainer: Dirk Eddelbuettel | --- a/debian/control | +++ b/debian/control | @@ -11,7 +11,7 @@ Homepage: https://cran.r-project.org/package=BH | Package: r-cran-bh | Architecture: all | Multi-Arch: foreign | -Depe

Bug#993324: libgsl25: ABI breakage: removed symbol gsl_linalg_QR_TR_decomp

2021-08-30 Thread Dirk Eddelbuettel
On 30 August 2021 at 23:42, Niko Tyni wrote: | Package: libgsl25 | Version: 2.7+dfsg-2 | Control: affects -1 libmath-gsl-perl | Severity: serious | | gsl 2.7 broke libmath-gsl-perl on runtime, as seen in the autopkgtest regressions: | |not ok 7 - use Math::GSL::Matrix; | |#

Bug#991748: ITP: r-cran-vroom -- GNU R package to read and write rectangular data quickly

2021-07-31 Thread Dirk Eddelbuettel
Package: wnpp Owner: Dirk Eddelbuettel Severity: wishlist * Package name: r-cran-vroom Version : 1.5.3 Upstream Author : James Hester and Hadley Wickham * URL or Web page : https://cran.r-project.org/package=vroom * License : MIT Description : GNU R package

Bug#991643: ITP: r-cran-tzdb -- GNU R package for Time Zone Database Information

2021-07-29 Thread Dirk Eddelbuettel
Package: wnpp Owner: Dirk Eddelbuettel Severity: wishlist * Package name: r-cran-tzdb Version : 0.1.2 Upstream Author : Davis Vaughan * URL or Web page : https://cran.r-project.org/package=tzdb * License : MIT Description : GNU R package for Time Zone Database

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