Hello Andreas!
On Wed, 26 Aug 2015 17:05:39 +0200 Andreas Tille wrote:
> Any chance to do a manual build on a more powerfull MIPS box which might
> not run into this problem?
I think we should disable the test suite (override_dh_auto_test).
What do you think?
Best regards,
Laszlo
signature
Hello Andreas!
On 06/07/15 13:40, Andreas Tille wrote:
> at first thanks for maintaining metastudent in the Debian Med team. I
> guess you did not yet realised this bug report since there is no
> response in the bug log. Please note that bugs in the Debian BTS are
I think this was fixed in meta
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
* Package name: python-freecontact
Version : 1.1
Upstream Author : Laszlo Kajan
* URL : http://rostlab.org/
* License : GPL-3+
Programming Lang: C++, Python
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
* Package name: libfreecontact-perl
Version : 0.08
Upstream Author : Laszlo Kajan
* URL : http://rostlab.org/
* License : GPL-1+ or Artistic
Programming Lang
Hello Aaron!
On 31/08/13 00:47, Aaron M. Ucko wrote:
> Source: freecontact
> Version: 1.0.17-1
> Severity: serious
> Justification: fails to build from source
>
> Builds of freecontact on non-x86 architectures have been failing:
>
> In file included from freecontact.cpp:33:0:
> freecontact.h
Fortran runtime error (Actual string length is shorter than the
+declared one for dummy argument) in profnet-isis with a new quilt
+patch. (Closes: #707874)
+ * Fixed Debian build issue: now builds twice in a row.
+
+ -- Laszlo Kajan Sat, 11 May 2013 22:37:45 +0200
+
profnet (1.0.21-1
Control: tags -1 - wheezy - stable
dssp builds properly on wheezy, with boost 1.49.0-3.2.
This bug is due to an unfortunate interplay between boost and libc6-dev (at
least >=2.17-1), where /usr/include/time.h defines TIME_UTC,
confusing boost.
Laszlo
--
To UNSUBSCRIBE, email to debian-bugs-d
ch. (Closes: #707874)
+ * Fixed Debian build issue: now builds twice in a row.
+
+ -- Laszlo Kajan Sat, 11 May 2013 22:37:45 +0200
+
profnet (1.0.21-1) unstable; urgency=low
* New upstream release
diff -Nru profnet-1.0.21/debian/patches/isis profnet-1.0.21/debian/patches/isis
--- profnet-1.0.21/debi
-isis with a new quilt
+patch. (Closes: #707874)
+ * Fixed Debian build issue: now builds twice in a row.
+
+ -- Laszlo Kajan Sat, 11 May 2013 22:37:45 +0200
+
profnet (1.0.21-1) unstable; urgency=low
* New upstream release
diff -Nru profnet-1.0.21/debian/patches/isis profnet-1.0.21
@@
+profnet (1.0.21-2) stable; urgency=low
+
+ * Fixed Fortran runtime error (Actual string length is shorter than the
+declared one for dummy argument) in profnet-isis with a new quilt
+patch. (Closes: #012345)
+ * Fixed Debian build issue: now builds twice in a row.
+
+ -- Laszlo Kaja
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
* Package name: metastudent
Version : 1.0.7
Upstream Author : Tobias Hamp
* URL : https://rostlab.org/owiki/index.php/Metastudent
* License : GPL-2
Package: wnpp
Severity: normal
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
Hello!
I am Laszlo Kajan, a member of the 'Gridengine packaging' project [1]. This
project team-maintains gridengine [2], a distributed resource management
system, in Debian.
gridengine used to be - well, s
>> /usr/share/perl5/GO/IO/Dotty.pm:24: 'use GraphViz;'. However d/control does
>> not Depends: libgraphviz-perl.
>>
>> Module fails to load when libgraphviz-perl is not installed.
>
> I was looking at this for a potential unblock, but had a query... why
> does the debdiff contain this?
>
> t/da
Package: libgo-perl
Version: 0.13-1
Severity: grave
Justification: renders package unusable
Dear Maintainer, Deb Med Team, so myself as well,
/usr/share/perl5/GO/IO/Dotty.pm:24: 'use GraphViz;'. However d/control does not
Depends: libgraphviz-perl.
Module fails to load when libgraphviz-perl is
Thanks Jakub!
> Perhaps it has something to do with this build-time[0] error:
>
> /bin/sh: 1: bc: not found
Of course. I've just uploaded a bc-less solution that make/SHELL should be able
to handle.
Best regards,
Laszlo
--
To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org
w
Control: tag -1 + patch
Unblock request sent #694373 [1].
[1] http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=694373
--
To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org
with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
000
@@ -1,3 +1,11 @@
+dma (0.0.2010.06.17-14.1) unstable; urgency=low
+
+ * Non-maintainer upload.
+ * Fixed 'modifies conffiles (policy 10.7.3): /etc/dma/dma.conf'
+Closes: #688682
+
+ -- Laszlo Kajan Sun, 25 Nov 2012 20:19:16 +
+
dma (0.0.2010.06.17-14) unstable; urgency=low
06.17/debian/changelog 2012-11-25 20:20:59.0 +
@@ -1,3 +1,11 @@
+dma (0.0.2010.06.17-14.1) unstable; urgency=low
+
+ * Non-maintainer upload.
+ * Fixed 'modifies conffiles (policy 10.7.3): /etc/dma/dma.conf'
+Closes: #688682
+
+ -- Laszlo Kajan Sun, 25 Nov 2012 20:19:
Julian,
> [...] the addition of
> debian/compat makes me kind of suspicious, as does the lintian override
sorry for the large diffs.
* d/compat is a side-effect of the rebuild, it gets created during that, but is
not /per-se/ necessary.
* The override is what's in the unstable version now. May
Control: tag -1 - sid
Thanks, L
--
To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org
with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
/libs/rgl.so: gl2ps'.
+ * FTBFS: types.h:98:5: error: 'copy' was not declared in this scope, and no
+declarations were found by argument-dependent lookup at the point of
+instantiation [-fpermissive] (Closes: #684810).
+
+ -- Laszlo Kajan Sun, 25 Nov 2012 13:08:19 +000
@@
+gst-buzztard (0.5.0-2+deb7u1) wheezy; urgency=low
+
+ * Non-maintainer upload.
+ * Fix FTBFS: plugin.c:403:3: error: too many arguments to function
+'bml_setup' (Closes: #684837)
+
+ -- Laszlo Kajan Sat, 24 Nov 2012 14:14:05 +
+
gst-buzztard (0.5.0-2) unstable; urgency=low
Control: tag -1 + pending
Sent unblock request #694174 [1].
[1] http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=694174
--
To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org
with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
ngelog 2010-04-10 15:09:12.0 +
+++ gst-buzztard-0.5.0/debian/changelog 2012-11-24 14:28:23.0 +
@@ -1,3 +1,10 @@
+gst-buzztard (0.5.0-2+deb7u1) wheezy; urgency=low
+
+ * Non-maintainer upload.
+ * Closes: 684837 (in wheezy, version 0.5.0-2)
+
+ -- Laszlo Kajan Sat, 24 Nov
Package: gst-buzztard
Version: 0.5.0-2
Severity: important
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
Dear Maintainer,
building the source package twice in a row fails 'due to unexpected upstream
changes'.
The version in unstable is not affected.
Best regards, Laszlo
- -- System Informati
Hello Dirk!
Do you mind if we upload a fix (in case we find one) for the version in wheezy?
Best regards, Laszlo
--
To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org
with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
Control: tag -1 - pending
Ooops I was out of sync, it's already closed.
--
To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org
with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
Control: tag -1 + pending
Maintainer uploaded fix to TPU [1].
[1] http://lists.debian.org/debian-release/2012/11/msg00951.html
--
To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org
with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
Hello Thomas!
> many thanks for helping! However, a fix for this bug is already waiting for
> approval to upload to tpu:
> http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=692879
Indeed, I didn't notice at first that this was being worked on, I ap
This d/copyright should fix this bug for the version in testing/wheezy
(0.5.7-2):
---
Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: RKWard
Source: http://rkward.sourceforge.net
Files: *
Copyright: 2002-2012 Thomas Friedrichsmeier and the RKWard team
Lic
The Developers' Reference (ver. 3.4.9) describes how urgency values translate
to unstable->testing migration delays in section 5.13.1.
* Please describe when to use low, medium or high urgency.
New Maintainer's guide just says 'always use low' [1]. I heard 'medium' should
be used for fixes to R
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
* Package name: conservation-code
Version : 20110309.0
Upstream Author : John A. Capra , Mona Singh
* URL : http://compbio.cs.princeton.edu/conservation/
* License
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
* Package name: concavity
Version : 0.1
Upstream Author : Thomas Funkhouser , John A. Capra
* URL : http://compbio.cs.princeton.edu/concavity/
* License : GPL
nclude the patch in the next release.
Thank you.
Best regards,
Laszlo Kajan
Debian Maintainer
- -- System Information:
Debian Release: wheezy/sid
APT prefers unstable
APT policy: (990, 'unstable')
Architecture: amd64 (x86_64)
Kernel: Linux 3.2.0-3-amd64 (SMP w/4 CPU cores)
Loc
--
To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org
with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
--
To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org
with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
* Package name: python-librcsb-core-wrapper
Version : 1.000
Upstream Author : Vladimir Guranovic
* URL : http://sw-tools.rcsb.org/apps/CORE-WRAPPER/index.html
mutations in DNA.
HMMER is used to find homologues for protein sequences. I am not familiar with
speech recognition at all... I have not heard of hmmer being used
for it.
Best regards,
Laszlo
On 06/07/12 19:43, Joachim Wiedorn wrote:
> Hello,
>
> Laszlo Kajan wrote on 2012-07
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
* Package name: hmmer2
Version : 2.3.2
Upstream Author : Sean Eddy
* URL : ftp://selab.janelia.org/pub/software/hmmer/
* License : GPL-2+
Programming Lang: C
Package: debian-maintainers
Severity: normal
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
This is my annual ping.
Signed this time, if reportbug also wants it.
Thank you,
Laszlo
- -- System Information:
Debian Release: wheezy/sid
APT prefers unstable
APT policy: (990, 'unstable')
Archite
Package: debian-maintainers
Severity: normal
This is my annual ping.
Thank you,
Laszlo
-- System Information:
Debian Release: wheezy/sid
APT prefers unstable
APT policy: (990, 'unstable')
Architecture: amd64 (x86_64)
Kernel: Linux 3.2.0-2-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_GB.utf8,
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan
* Package name: libsort-key-top-perl
Version : 0.06
Upstream Author : Salvador Fandiño
* URL :
http://search.cpan.org/~salva/Sort-Key-Top-0.06/lib/Sort/Key/Top.pm
* License : Perl Artistic
Programming
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan
* Package name: dssp
Version : 2.0.4
Upstream Author : Maarten L. Hekkelman
* URL : http://www.cmbi.ru.nl/dssp/
* License : Boost-1.0
Programming Lang: C++
Description : protein secondary structure
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan
* Package name: librg-blast-parser-perl
Version : 0.02
Upstream Author : Laszlo Kajan
* URL : http://rostlab.org/
* License : Artistic
Programming Lang: Perl
Description : very fast NCBI BLAST
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan
* Package name: librostlab-blast
Version : 1.0.0
Upstream Author : Laszlo Kajan
* URL : http://rostlab.org/
* License : LGPL
Programming Lang: C, C++
Description : very fast C++ library for parsing
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan
* Package name: librostlab
Version : 1.0.20
Upstream Author : Laszlo Kajan
* URL : http://rostlab.org/
* License : LGPL-3+
Programming Lang: C++
Description : C++ library from the Rost Lab
The
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan
* Package name: ffindex
Version : 0.9.3
Upstream Author : Andreas Hauser
* URL :
http://pubshare.genzentrum.lmu.de/scientific_computing/software/ffindex/
* License : CC-BY-SA-3.0
Programming Lang: C
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan
* Package name: sift
Version : 3.0
Upstream Author : Pauline Ng
* URL : http://sift-dna.org/
* License : FHCRC NONCOMMERCIAL LICENSE
<ftp://ftp.ncbi.nih.gov/repository/blocks/unix/blimps/LICE
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan
* Package name: proftmb
Version : 1.1.7
Upstream Author : Henry Bigelow
* URL : http://rostlab.org/
* License : GPL
Programming Lang: C++
Description : per-residue prediction of bacterial
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan
* Package name: blimps
Version : 3.9
Upstream Author : Jorja Henikoff
* URL : ftp://ftp.ncbi.nih.gov/repository/blocks/unix/blimps/
* License : FHCRC NONCOMMERCIAL LICENSE
<ftp://ftp.ncbi.nih.
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan
* Package name: hhsuite
Version : 2.0.4
Upstream Author : Johannes Soeding, Michael Remmert, Andreas Hauser
, Andreas Biegert
* URL : http://toolkit.genzentrum.lmu.de/sections/search
* License : GPLv3
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan
* Package name: reprof
Version : 1.0.0
Upstream Author : Peter Hoenigschmid
* URL : http://rostlab.org/
* License : GPL
Programming Lang: Perl
Description : protein secondary structure and
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan
* Package name: libai-fann-perl
Version : 0.10
Upstream Author : Salvador Fandino
* URL : http://fann.sf.net/
* License : Perl Artistic License
Programming Lang: C, C++, Perl
Description : Perl
The following warnings are shown when linked with binutils-gold
2.21.53.20110922-1:
g++ -static -Wl,-z,defs -o pp_popcon_cnt.static pp_popcon_cnt.o
-lboost_program_options-mt
/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../../lib/libboost_program_options-mt.a(cmdline.o):function
non-virtual thun
Package: debian-maintainers
Severity: normal
Tags: patch
Dear DM team,
please add my key 'Laszlo Kajan ' to the debian-keyring
package.
The fingerprint of my key is:
91B4 6ECD 9031 2D7C 86F9 469A 9BD2 D640 9A0C 52FA
Please find attached the corresponding jetring chan
Dear Holger,
thanks for bringing this up! I have committed the simple change that should fix
this:
--- debian/cron.daily (revision 8038)
+++ debian/cron.daily (working copy)
@@ -1,2 +1,2 @@
#!/bin/sh
-/usr/share/pp-popularity-contest/cron.daily
+if [ -x /usr/share/pp-popularity-contest/cron
04:11, Aaron M. Ucko wrote:
> Laszlo Kajan writes:
>
>> thank you for the note - I apologize for overlooking this build dep. The fix
>> is committed and awaits upload.
>
> No problem; thanks for the quick fix! As a member of Debian-med (albeit
> fairly narrowly focus
Dear Aaron,
please do the upload, then, if you see it has not yet been uploaded - my
regular sponsor Steffen is very busy these days.
Thank you very much!
Best regards,
Laszlo
On 02/10/11 04:11, Aaron M. Ucko wrote:
> Laszlo Kajan writes:
>
>> thank you for the note - I a
Dear Aaron,
thank you for the note - I apologize for overlooking this build dep. The fix is
committed and awaits upload.
Best regards,
Laszlo
On 01/10/11 17:23, Aaron M. Ucko wrote:
> Source: pp-popularity-contest
> Version: 1.0.3-2
> Severity: serious
> Justification: fails to build from sour
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan
* Package name: pp-popularity-contest
Version : 1.0.3
Upstream Author : Laszlo Kajan
* URL : http://www.rostlab.org/
* License : GPL
Programming Lang: C++
Description : PredictProtein popularity
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan
* Package name: librg-utils-perl
Version : 1.0.41
Upstream Author : Burkhard Rost
* URL : http://www.rostlab.org/
* License : GPL
Programming Lang: Perl
Description : parsers and format conversion
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan
* Package name: profphd
Version : 1.0.35
Upstream Author : Laszlo Kajan
* URL : http://rostlab.org/
* License : GPL
Programming Lang: Perl
Description : secondary structure and solvent
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan
* Package name: profphd-utils
Version : 1.0.7
Upstream Author : Laszlo Kajan
* URL : http://rostlab.org/
* License : GPL
Programming Lang: Fortran
Description : profphd helper utilities convert_seq
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan
* Package name: libzerg-perl
Version : 1.0.4
Upstream Author : Apuã Paquola
* URL : http://code.google.com/p/libzerg/
* License : GPL
Programming Lang: Perl
Description : fast perl module for
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan
* Package name: libzerg
Version : 1.0.7
Upstream Author : Apua C.M. Paquola
* URL : http://code.google.com/p/libzerg/
* License : GNU GPL v2
Programming Lang: C
Description : C library for parsing
Package: cpufrequtils
Version: 004-2
Severity: normal
Tags: patch
fails to load governor, powernow etc. modules for family 17 AMD Turion(tm) X2
Ultra Dual-Core
Mobile ZM-80
Patch adds 17 to family recognition.
-- System Information:
Debian Release: 5.0
APT prefers testing
APT policy: (500,
I think I misinterpreted the kernel oops. If I disable loading
cpufreq_stats, no oops occurs at boot time. If I load the module after
the machine has booted, it loads cleanly.
--
To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org
with a subject of "unsubscribe". Trouble? Conta
Bug is still present in ipsec-tools 0.7.1-1.3. Patch is attached.
diff -ur ipsec-tools-0.7.1/debian/rules ipsec-tools-0.7.1_mod/debian/rules
--- ipsec-tools-0.7.1/debian/rules 2009-01-06 10:50:50.0 -0500
+++ ipsec-tools-0.7.1_mod/debian/rules 2009-01-06 10:50:39.0 -0500
@@ -22,7
Package: ipsec-tools
Version: 1:0.7.1-1.2
Severity: important
setkey complains: "Policy priority not compiled in" while there is kernel
support.
A closer look at the compilation process reveals that ./configure does not find
the sadb_x_policy.sadb_x_policy_priority field of the structure.
Debi
Interrupts: Mask+ 64bit+
Queue=0/0 Enable-
Capabilities: [6c] HyperTransport: MSI Mapping Enable+ Fixed+
Kernel driver in use: HDA Intel
Kernel modules: snd-hda-intel
Laszlo Kajan
--
To UNSUBSCRIBE, email to [EMAIL PROTECTED]
with a subject of "unsubscribe"
Apologies, apparently my submissions did get though multiple times.
Laszlo
--
To UNSUBSCRIBE, email to [EMAIL PROTECTED]
with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]
Package: fuse
Version: 2.7.4-1.1
Severity: normal
Tags: patch
Together with sshfs it fails to mount locations like:
lkajan,[EMAIL PROTECTED]:/home/groups/j/jb/jbio
because of the ',' in the name. Both sshfs and fuse need to be patched
to properly escape and unescape such locations.
-- System In
Package: fuse
Version: 2.7.4-1.1
Severity: normal
Tags: patch
Can not mount locations like:
lkajan,[EMAIL PROTECTED]:/home/groups/j/jb/jbio
Both fuse and sshfs need to be patched to get the correct
escaping/unescaping of ','.
-- System Information:
Debian Release: lenny/sid
APT prefers testi
Package: linux-image-2.6.24-etchnhalf.1-686-bigmem
Version: 2.6.24-6~etchnhalf.5
Severity: important
File operations hang after a while on a raid5 MD array with XFS filesystem on
it. XFS may be irrelevant. Default parameters were used, so
/sys/block/md*/md/stripe_cache_size was not changed.
No e
Package: ov51x-jpeg-source
Version: 1.5.2-2
Severity: important
Tags: patch
Justification: fails to build from source
I noticed that when I try to build the ov51x_jpeg module, the compiler
says:
---
/usr/src/modules/ov51x-jpeg/ov51x-jpeg-core.c: In function
‘ov51x_init_isoc’:
/
]
kernel: [] kernel_thread_helper+0x5/0x10
kernel: Code: 0f 0b 6a 00 0f ae 98 f8 83 c4 10 5b 5e 5f 5d c3 e8 96 68 91
kernel: <6>note: nfsd[2274] exited with preempt_count 1
I recon this kernel is not stable in my SMP+XFS+NFS scenario. :|
Best regards,
Laszlo Kajan
--
To UNSUBSCRIBE, em
76 matches
Mail list logo
