Bug#1036047: unblock: nlopt/2.7.1-5

2023-05-14 Thread Nilesh Patra
dev only + + -- Nilesh Patra Sun, 14 May 2023 09:35:20 + + nlopt (2.7.1-4) unstable; urgency=medium * Team upload diff -Nru nlopt-2.7.1/debian/libnlopt0.preinst nlopt-2.7.1/debian/libnlopt0.preinst --- nlopt-2.7.1/debian/libnlopt0.preinst1970-01-01 00:00:00.0 + +++ nl

Bug#1035629: libnlopt-dev: unhandled symlink to directory conversion: /usr/share/doc/PACKAGE

2023-05-14 Thread Nilesh Patra
Hi Thanks for explaining it to me. On 14/05/23 14:08, Andreas Beckmann wrote: On 14/05/2023 10.22, Nilesh Patra wrote: Could you help explain where exactly the overwriting is happening? In bullseye libnlopt-dev ships /usr/share/doc/libnlopt-dev as a symlink to libnlopt0 dpkg retains

Bug#1035629: libnlopt-dev: unhandled symlink to directory conversion: /usr/share/doc/PACKAGE

2023-05-14 Thread Nilesh Patra
t exist in the package are in the nlopt-doc package which do not touch the examples dir or changelog dir. Could you help explain where exactly the overwriting is happening? [1]: https://packages.debian.org/bullseye/amd64/libnlopt0/filelist Thanks Nilesh

Bug#918774: fixed in lasi 1.1.3-1

2023-05-06 Thread Nilesh Patra
On Thu, 27 Apr 2023 00:37:06 +0530 Nilesh Patra wrote: > On Sun, 23 Apr 2023 06:18:58 + Debian FTP Masters > wrote: > > Source: lasi > > Source-Version: 1.1.3-1 > > Done: Nilesh Patra > > Sending BTS mail to help reset the autorm counter. Another m

Bug#1032902: Numba issues for genx for other architectures than amd64 and ppc64el (Was: genx won't start: TypeError: Pen(): arguments did not match any overloaded call)

2023-05-02 Thread Nilesh Patra
On Sat, Apr 29, 2023 at 07:44:24PM +0530, Nilesh Patra wrote: > On Tue, Apr 18, 2023 at 03:54:23PM +0200, Andreas Tille wrote: > >2. Remove the package from testing for the moment. The only > > rdepends is currently pan-grazing-incidence which will be > > low

Bug#1035341: libvdk2-dev: Please add a .pc file

2023-05-01 Thread Nilesh Patra
it'd be nice if this could be taken up in the debian package (the change is in no way large or disruptive). I've attached a patch to get the .pc file installed with libvdk2-dev, please consider applying. Best, Nilesh -- System Information: Debian Release: bookworm/sid APT prefers testing

Bug#988127: neomutt hangs for minutes while checking S/MIME signed mails

2023-04-30 Thread Nilesh Patra
eomutt, because it > does happen to me with neomutt right now (version 20201127+dfsg.1-1.1 ), > exactly as described in the original mutt bug report. It happens for me also with latest version of neomutt. @Antonio, could you please consider to investigate this? -- Best, Nilesh signature

Bug#1032902: Numba issues for genx for other architectures than amd64 and ppc64el (Was: genx won't start: TypeError: Pen(): arguments did not match any overloaded call)

2023-04-29 Thread Nilesh Patra
On Tue, Apr 18, 2023 at 03:54:23PM +0200, Andreas Tille wrote: > and we have other errors for other architectures which all contain > the string "numba". IMHO this is a mess we can hardly fix in hard > freeze. I see only two chances: I haven't done a thorough research but it is probably

Bug#918774: fixed in lasi 1.1.3-1

2023-04-26 Thread Nilesh Patra
On Sun, 23 Apr 2023 06:18:58 + Debian FTP Masters wrote: Source: lasi Source-Version: 1.1.3-1 Done: Nilesh Patra Sending BTS mail to help reset the autorm counter. Thanks Nilesh

Bug#1034221: caddy: dh_installsystemd doesn't handle files in /usr/lib/systemd/system

2023-04-17 Thread Nilesh Patra
On Mon, Apr 17, 2023 at 03:47:43PM +, Peymaneh wrote: > Am 16.04.23 um 17:37 schrieb Nilesh Patra: > > Can you take care of this? > > thanks for the mail Nilesh, I missed the bugreport. In your fix, why not use Andreas' suggestion to install it via "pkg-config --variable=

Bug#1034221: caddy: dh_installsystemd doesn't handle files in /usr/lib/systemd/system

2023-04-16 Thread Nilesh Patra
em now, you'll > likely need to reverse that change again in the future. > > Preferably the correct path is derived from the value given by > pkg-config --variable=systemdsystemunitdir systemd Can you take care of this? -- Best, Nilesh signature.asc Description: PGP signature

Bug#1034063: unblock: ruby-maven-libs/3.3.9+ds-4

2023-04-07 Thread Nilesh Patra
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: unblock X-Debbugs-Cc: ruby-maven-l...@packages.debian.org Control: affects -1 + src:ruby-maven-libs Please unblock package ruby-maven-libs [ Reason ] Letting this through helps fix RC bug#1033912

Bug#1033839: docker.io -- please update to v23.0.0 or above

2023-04-02 Thread Nilesh Patra
Package: docker.io Version: 20.10.23+dfsg1-1 Severity: normal Dear Maintainer, Singularity-container needs a more upto date version of docker.io's -dev package. More specifically, it needs Uidmaps feature in idtools. Please consider updating docker.io once freeze ends. -- System Information:

Bug#1033415: micro: syntax highlighting doesn't work

2023-04-01 Thread Nilesh Patra
have tried to fix this with a new upload 2.0.11-2. It works fine for me locally. Could you please consider to test with this release? Also, if you find more bugs please in the micro debian package feel free to ping. -- Best, Nilesh signature.asc Description: PGP signature

Bug#1032120: Upload of new upstream version before fix has migrated to testing (Was: Re: Bug#1032120: tiledb: uses atomic operations, but is not linked to libatomic)

2023-03-14 Thread Nilesh Patra
Hi, I am removing myself from the uploaders field/maintenance of tiledb-py. Feel free to update it once tiledb is ready for migration. The repository lives at python team namespace. -- Best, Nilesh signature.asc Description: PGP signature

Bug#1032975: igdiscover -- Broken, unusable package due to incomplete code in the binary package

2023-03-14 Thread Nilesh Patra
Package: igdiscover Version: 0.11-4 Severity: serious Usertags: ftbfs-bookworm Dear Maintainer, igdiscover vendors just a /usr/bin/igdiscover with is supposed to be nothing more than just a wrapper. The actual code is missing from the binary package (i.e. the python files) effectively making

Bug#1032120: Upload of new upstream version before fix has migrated to testing (Was: Re: Bug#1032120: tiledb: uses atomic operations, but is not linked to libatomic)

2023-03-13 Thread Nilesh Patra
On Sun, Mar 12, 2023 at 07:27:46PM +0530, Nilesh Patra wrote: > On 3/12/23 19:00, Dirk Eddelbuettel wrote: > > > > Why not wait a week on 2.15.0-1 which now 'Too young, only 4 of 10 days > > old'? > > It won't migrate as told earlier too. By tomorrow it would have 'bl

Bug#1032120: Upload of new upstream version before fix has migrated to testing (Was: Re: Bug#1032120: tiledb: uses atomic operations, but is not linked to libatomic)

2023-03-12 Thread Nilesh Patra
out of testing if we do not revert the version to a previous one. [1]: https://release.debian.org/bullseye/freeze_policy.html#appropriate Best, Nilesh

Bug#1032120: Upload of new upstream version before fix has migrated to testing (Was: Re: Bug#1032120: tiledb: uses atomic operations, but is not linked to libatomic)

2023-03-11 Thread Nilesh Patra
Dirk - Ping on this? If you do not have the time, let me know. I'll do a NMU for tiledb to revert to prev version and also file an unblock request. On 3/10/23 20:53, Nilesh Patra wrote: Quoting Andreas Tille: your recent upload of tiledb 2.15.0-1 into unstable is quite unfortunate in freeze

Bug#970021: Provisional packaging for Aoache Arrow available

2023-03-11 Thread Nilesh Patra
tml Thanks, Nilesh

Bug#970021: Provisional packaging for Aoache Arrow available

2023-03-10 Thread Nilesh Patra
sts.debian.org/debian-med/2021/08/msg00066.html > -- Best, Nilesh

Bug#1032120: Upload of new upstream version before fix has migrated to testing

2023-03-10 Thread Nilesh Patra
://tracker.debian.org/pkg/tiledb Thanks, Nilesh

Bug#1032540: conda-package-streaming: FTBFS in testing: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.11 returned exit code 13

2023-03-09 Thread Nilesh Patra
unblock 1032540 by 1031293 close 1032540 stop Once python3-zstandard has migrated to testing the build time test should work again. python-zstandard has migrated, and I am able to build conda-package-streaming in a testing chroot. Closing the bug. Thanks, Nilesh

Bug#1032542: conda-package-handling: FTBFS in testing:, dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.11

2023-03-09 Thread Nilesh Patra
unblock 1032542 by 1031293 close 1032542 stop python-zstandard has migrated, and I am able to build conda-package-handling in a testing chroot. Closing the bug. Thanks, Nilesh

Bug#1032550: igdiscover: FTBFS in testing: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.11 returned exit code 13

2023-03-09 Thread Nilesh Patra
On 3/10/23 00:17, Santiago Vila wrote: Nilesh Patra wrote: I wonder if it is another of those "$specific-CPU-configuration" failures. Please note that no specific configuration is mandated by Debian policy, so I understand that packages must build from source regardless of the numb

Bug#1032549: python-pbcore: FTBFS in testing: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.11 returned exit code 13

2023-03-09 Thread Nilesh Patra
16.2-2, which is currently in unstable but it'd migrate to testing by tomorrow or the day after. Could you please consider to re-build and close the bug once it does? If you want, I'll send a reminder as well. Thanks, Nilesh

Bug#1032550: igdiscover: FTBFS in testing: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.11 returned exit code 13

2023-03-09 Thread Nilesh Patra
; failures. Thanks, Nilesh

Bug#1031905: riseup-vpn: fails to connect, when pressing cancel some the ui elements will dissapear.

2023-03-08 Thread Nilesh Patra
ill the same problem. Understood. I think this is a missing dependency, I will add it and upload. Could you please meanwhile install "iptables"? $ sudo apt install iptables After you do so, try to run riseup-vpn again. It might/should work. Could you please check this and get back to me? Thanks, Nilesh

Bug#1031192: toil: FTBFS (The job JobClass is requesting 2.0 cores)

2023-03-07 Thread Nilesh Patra
Hi Santiago, Can you please send the complete log as requested? (Michael probably forgot to Cc you) Thanks Nilesh Quoting Michael Crusoe: Thank you for the report. Please send me the entire log (as an attachment or link) so I can fix all the single-core test issues. -- Michael R. Crusoe

Bug#1031862: AdGuardHome packaging (Js and Go)

2023-03-07 Thread Nilesh Patra
to be separately packaged. [1]: https://github.com/AdguardTeam/AdGuardHome [2]: https://wiki.debian.org/Javascript/GroupSourcesTutorial -- Best, Nilesh

Bug#1031905: riseup-vpn: fails to connect, when pressing cancel some the ui elements will dissapear.

2023-03-05 Thread Nilesh Patra
in freeze and it'd get more difficult to do further changes going ahead. Thank you! Nilesh

Bug#1031905: riseup-vpn: fails to connect, when pressing cancel some the ui elements will dissapear.

2023-03-03 Thread Nilesh Patra
are you based in Russia by any chance? * Can you please run riseup-vpn via your terminal and share with me the output you get on terminal when riseup-vpn is choking/not connecting? -- Best, Nilesh signature.asc Description: PGP signature

Bug#1016732: Please help to reproduce (Was: shiny-server: server-function? don't run)

2023-02-25 Thread Nilesh Patra
On Sun, Feb 26, 2023 at 12:46:15AM +0530, Pirate Praveen wrote: > On Sun, 12 Feb 2023 23:16:06 +0530 Nilesh Patra wrote: > > Sorry for pinging you again, but would you be able to take a look at this > please? > > I don't know enough coffeescript to be able to check this and i

Bug#1017871: Please help to reproduce (Was: shiny-server: server-function don't run)

2023-02-23 Thread Nilesh Patra
we (debian) are currently in soft-freeze and making any changes will become progressively harder until new debian (bookworm) release. Looking forward to hear from you. -- Best, Nilesh signature.asc Description: PGP signature

Bug#1031443: python-zstandard: FTBFS: ImportError: zstd C API versions mismatch; Python bindings were not compiled/linked against expected zstd version (10504 returned by the lib, 10504 hardcoded in z

2023-02-20 Thread Nilesh Patra
ery well. Is someone working to fix this? -- Best, Nilesh signature.asc Description: PGP signature

Bug#1031465: snippy: FTBFS: make[2]: *** [Makefile:32: S1/snps.tab] Error 2

2023-02-20 Thread Nilesh Patra
Attempting to fix Pjotr's address. Pjotr: if you are reading this, could you comment on it? Thanks Nilesh On Mon, 20 Feb 2023 17:21:59 +0100 Andreas Tille wrote: > Hi Pjotr, > > in contrast to the bug reporter I get in my unstable chroot > > ... > [15:53:57] Checking

Bug#1031444: poetry: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.11 returned exit code 13

2023-02-19 Thread Nilesh Patra
for me, not sure what is off. It even works on salsa CI[1] so not sure of a way to properly repro it. @Santiago, sorry about pulling you into a random thread. If you have some time, could you please see if this is reproducible at your end? And if so, could you, like the previous time, give m

Bug#1031444: poetry: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.11 returned exit code 13

2023-02-18 Thread Nilesh Patra
now, I hope that is fine. -- Best, Nilesh signature.asc Description: PGP signature

Bug#1031484: augur: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.11 returned exit code 13

2023-02-18 Thread Nilesh Patra
Control: reassign -1 python3-zstandard 0.19.0-3 Control: affects -1 + augur Control: forcemerge -1 1031293 On Fri, 17 Feb 2023 08:02:43 +0100 Lucas Nussbaum wrote: > Source: augur > Version: 20.0.0-1 > Severity: serious > Justification: FTBFS > Tags: bookworm sid ftbfs > User: lu...@debian.org >

Bug#1031475: conda-package-streaming: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.11 returned exit code 13

2023-02-18 Thread Nilesh Patra
that can be done at c-p-h end to fix this. Reassigning and merging with an already filed bug. -- Best, Nilesh signature.asc Description: PGP signature

Bug#1031434: conda-package-handling: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.11 returned exit code 13

2023-02-17 Thread Nilesh Patra
that can be done at c-p-h end to fix this. Reassigning and merging with an already filed bug. -- Best, Nilesh signature.asc Description: PGP signature

Bug#1017871: Please help to reproduce (Was: shiny-server: server-function don't run)

2023-02-12 Thread Nilesh Patra
Hi Yadd, On Sat, 28 Jan 2023 11:09:21 +0530 Nilesh Patra wrote: > On Fri, Jan 27, 2023 at 07:45:35PM +, Krüger, Sebastian wrote: > > I'm not a Shiny user either (so far), however the plan is for our institute > > to provide Shiny applications for certain users. (I will

Bug#1031136: unblock: python-pynndescent/0.5.8-2

2023-02-12 Thread Nilesh Patra
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: unblock Please unblock package python-pynndescent This package was earlier stuck due to some precision issues on ppc64el. By the time that got sorted, python3.11 came in and one of its

Bug#1031134: unblock: python-cogent/2022.10.31a1+dfsg-3

2023-02-12 Thread Nilesh Patra
Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: unblock X-Debbugs-Cc: python-cog...@packages.debian.org Control: affects -1 + src:python-cogent Please unblock package python-cogent This package was earlier stuck due to numba incompat with

Bug#1030096: dask.distributed intermittent autopkgtest fail

2023-02-10 Thread Nilesh Patra
On 10 February 2023 1:28:04 pm IST, "Rebecca N. Palmer" wrote: >On 10/02/2023 06:41, Andreas Tille wrote: >> Am Fri, Feb 10, 2023 at 08:44:01AM +0530 schrieb Nilesh Patra: >>> But I am not sure if this counter would be set to 2 days (from 5 days) >>> or n

Bug#1030096: dask.distributed intermittent autopkgtest fail

2023-02-09 Thread Nilesh Patra
release team. In any case it might be a nice idea to hold off any further uploads until this migrates. -- Best, Nilesh signature.asc Description: PGP signature

Bug#1028779: buildbot: FTBFS: dh_auto_test: error: pybuild --test -i python{version} -p 3.11 --system=custom "--test-args=PYTHONPATH=pkg:{destdir}/{install_dir} PATH=\$PATH:{destdir}/usr/bin trial3 --

2023-02-05 Thread Nilesh Patra
Hi Robin, buildbot is marked for removal on Feb 16. Do you intend to make an upload? Thanks Nilesh On Wed, 1 Feb 2023 11:47:56 +0100 s3v wrote: > Dear maintainer, > > Please find attached a patch to avoid deprecation warnings > causing tests to fail. > > Kind Regar

Bug#1022772: fixed in btllib 1.4.10+dfsg-1

2023-02-02 Thread Nilesh Patra
Debian FTP archive. While you have excluded the architectures in d/control, I still very much believe that this is not really a "fix" for the bug. The real fix shall be when btllib actually builds on 32 but archs. Hence, I'm reopening this. You can reduce the severity should you like, though. Best, Nilesh

Bug#1028848: python-miio: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.10 3.11" returned exit code 13

2023-01-28 Thread Nilesh Patra
reassign 1028848 python-zeroconf 0.47.1-1 fixed 0.47.1-2 close 1028848 stop This was a problem with zeroconf instead, which has been fixed. Re-assigned and closed. -- Best, Nilesh signature.asc Description: PGP signature

Bug#1017871: Please help to reproduce (Was: shiny-server: server-function don't run)

2023-01-27 Thread Nilesh Patra
> was generated with coffescript 1.12.7. Looks like the coffeescript thingy in #1016732 is still unfixed and I've re-opened the BR. Could you please consider taking another look? -- Best, Nilesh signature.asc Description: PGP signature

Bug#1029660: nipype FTBFS: ModuleNotFoundError: No module named 'nibabel.trackvis'

2023-01-25 Thread Nilesh Patra
Package: nipype Version: 1.7.1-2 Severity: serious Dear Maintainer, nipype is incompatible with nibabel 4.0 and FTBFS with several errors of type: | _ ERROR collecting interfaces/mrtrix/tests/test_auto_Tensor2Vector.py __ | ImportError while importing test module

Bug#1028651: r-base-core: Unnecessary use of Perl in postinst

2023-01-25 Thread Nilesh Patra
is bug. Thanks Nilesh

Bug#1029310: [Help] Re: Bug#1029310: src:r-cran-bayesplot: fails to migrate to testing for too long: autopkgtest regression

2023-01-23 Thread Nilesh Patra
On 23 January 2023 3:06:58 pm IST, Andreas Tille wrote: >Am Sat, Jan 21, 2023 at 10:17:06PM +0530 schrieb Nilesh Patra: >> On 1/21/23 21:59, Andreas Tille wrote: >> > Am Sat, Jan 21, 2023 at 09:46:07PM +0530 schrieb Nilesh Patra: >> > > On 1/21/23 16:56, Andrea

Bug#1028563: nyx: Does not work with python 3.11 anymore

2023-01-21 Thread Nilesh Patra
Nilesh

Bug#1028563: nyx: Does not work with python 3.11 anymore

2023-01-21 Thread Nilesh Patra
y to run nyx with python3-stem 1.8.1-2.1 version and see if this work for you? Thanks, Nilesh

Bug#1029310: [Help] Re: Bug#1029310: src:r-cran-bayesplot: fails to migrate to testing for too long: autopkgtest regression

2023-01-21 Thread Nilesh Patra
On 1/21/23 21:59, Andreas Tille wrote: Am Sat, Jan 21, 2023 at 09:46:07PM +0530 schrieb Nilesh Patra: On 1/21/23 16:56, Andreas Tille wrote: as per DebCI there are 15 autopkgtest failures which seem to be connected to ggplot2 API somehow.[1] Interestingly Salsa CI[2] does not show

Bug#1029310: [Help] Re: Bug#1029310: src:r-cran-bayesplot: fails to migrate to testing for too long: autopkgtest regression

2023-01-21 Thread Nilesh Patra
here. [1] https://ci.debian.net/data/autopkgtest/testing/amd64/r/r-cran-bayesplot/30534574/log.gz [2] https://salsa.debian.org/r-pkg-team/r-cran-bayesplot/-/jobs/3779597 Thanks Nilesh

Bug#1029351: Strange error in dh_auto_install of r-cran-spatstat.core

2023-01-21 Thread Nilesh Patra
d, I do not know the essence of this code, and please _triple check_ and ** do not blindly apply ** [1] https://salsa.debian.org/r-pkg-team/r-cran-spatstat.core/-/jobs/3830571 [2]: https://salsa.debian.org/r-pkg-team/dh-r/-/blob/master/dh/R.pm#L213 Hope that helps. Thank you Nilesh

Bug#1029350: Strange error in dh_auto_install of r-cran-spatstat.core

2023-01-21 Thread Nilesh Patra
0571 [2]: https://salsa.debian.org/r-pkg-team/dh-r/-/blob/master/dh/R.pm#L213 Hope that helps. Thank you Nilesh

Bug#1028201: riseup-vpn unable to find a usable polkit agent under phosh

2023-01-20 Thread Nilesh Patra
cykit-1-gnome | polkit-1-auth-agent" If this is not functional for you, there is nothing I can do from riseup-vpn side to make it work. As it works for Evangelos, please kindly check if this works as well for you and ensure that this is not a local issue. Thank you Nilesh

Bug#1028774: macsyfinder: FTBFS: RuntimeError: cannot join current thread

2023-01-15 Thread Nilesh Patra
On Sun, Jan 15, 2023 at 04:36:39PM +0100, Santiago Vila wrote: > El 15/1/23 a las 15:45, Nilesh Patra escribió: > > On Sun, Jan 15, 2023 at 02:02:15PM +0100, Santiago Vila wrote: > > > I can reproduce this build failure on Hetzner virtual machines with 2 > > > CPUs, &g

Bug#1028774: macsyfinder: FTBFS: RuntimeError: cannot join current thread

2023-01-15 Thread Nilesh Patra
a. -- Best, Nilesh signature.asc Description: PGP signature

Bug#1028774: macsyfinder: FTBFS: RuntimeError: cannot join current thread

2023-01-15 Thread Nilesh Patra
On Sun, Jan 15, 2023 at 10:08:18AM +0100, Lucas Nussbaum wrote: > On 15/01/23 at 12:20 +0530, Nilesh Patra wrote: > > It passes for me in a clean unstable chroot. Could you please check if this > > is still persistent or was just a on-off thing? > > I can still reprod

Bug#1028774: macsyfinder: FTBFS: RuntimeError: cannot join current thread

2023-01-14 Thread Nilesh Patra
g-info It passes for me in a clean unstable chroot. Could you please check if this is still persistent or was just a on-off thing? Thanks Nilesh

Bug#1028748: bottleneck: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.10 3.11" returned exit code 13

2023-01-14 Thread Nilesh Patra
There is one hacky way to get this moving, and the package build with the patch. But not sure if it should be applied or not (as this is ugly) I am not adding a patch tag for the same reason. Have also mentioned this as a comment in upstream issue. --- a/bottleneck/slow/move.py +++

Bug#1028675: defcon: FTBFS: distutils.errors.DistutilsError: Command '['/usr/bin/python3.10', '-m', 'pip', '--disable-pip-version-check', 'wheel', '--no-deps', '-w', '/tmp/tmpyii6c34w', '--quiet', 'to

2023-01-14 Thread Nilesh Patra
mli anywhere in the code, and setuptools seems to be doing fine. Could you please consider to do a re-build and see if it works for you and this wasn't a one-off? Thanks Nilesh

Bug#1027215: How much do we lose if we remove theano (+keras, deepnano, invesalius)?

2023-01-14 Thread Nilesh Patra
we can ask them. -- Best, Nilesh signature.asc Description: PGP signature

Bug#1028611: deepin-terminal: lack of icons, customizations

2023-01-13 Thread Nilesh Patra
Package: deepin-terminal Version: 5.2.11-1+b4 Severity: important X-Debbugs-Cc: a...@debian.org, by...@debian.org Dear Maintainer, In the current release of deepin-terminal, I am seeing missing icons for some of the buttons. I also do not see an option to change themes+color in the terminal.

Bug#1028609: deepin-terminal: FTBFS -- Build dependency uninstallable

2023-01-13 Thread Nilesh Patra
Package: deepin-terminal Version: 5.2.11-1+b4 Severity: serious X-Debbugs-Cc: a...@debian.org, by...@debian.org Dear Maintainer, deepin-terminal FTBFS because of not being able to install its B-Ds. Some B-D (transitively?) depends on qtbase-abi-5-15-7 which is not installable due to being a

Bug#976506: Fix for bullseye

2023-01-09 Thread Nilesh Patra
On 9 January 2023 8:11:11 pm IST, Santiago Vila wrote: >reopen 976506 >found 976506 1.7.2-1 >found 976506 1.7.2-2 >fixed 976506 2.0.1-1 >thanks > >Hi. Please consider fixing this in stable as well, >as packages in stable must build in stable. > >If you have never done an upload for stable, the

Bug#1022571: transition: pandas 1.3 -> 1.5

2023-01-06 Thread Nilesh Patra
een fixed in latest upload of skbio, I closed the bug sometime ago. Thanks, -- Best, Nilesh

Bug#1027811: libcifpp-data: uninstallable

2023-01-03 Thread Nilesh Patra
> > 8if [ "${euid}" -ne 0 ] ; then > 9then echo "Please run as root" > 10exit > 11fi This is fixed in the latest upload right - could you check? If so, could you close this bug report? -- Best, Nilesh signature.asc Description: PGP signature

Bug#1027751: need to properly depend on python3-exceptiongroup

2023-01-02 Thread Nilesh Patra
Source: pytest Version: 7.1.2-4 Severity: serious X-Debbugs-Cc: roehl...@debian.org Hi, While building pairtools version 1.0.2-1 I noticed this error. I have temporarliy added a build depend on exceptiongroup in the said package to work around the issue. | I: pybuild base:240: export

Bug#1027629: python-biopython: FTBFS: Test DSSP generation from MMCIF with non-standard residues.

2023-01-01 Thread Nilesh Patra
Hi Maarten, This seems to stem from your latest upload of dssp. Could you consider taking a look at this one? Thanks, Nilesh On Sun, 1 Jan 2023 15:20:12 +0100 Lucas Nussbaum wrote: > Source: python-biopython > Version: 1.80+dfsg-4 > Severity: serious > Justification: FTBFS >

Bug#1027677: RM: pairtools [s390x] -- ROM; build-deps on pysam which is un-available on s390

2023-01-01 Thread Nilesh Patra
is not available on s390x due to bcftools which does not work on big endian archs (see https://github.com/samtools/bcftools/issues/720) Hence please remove pairtools (all bin packages) from s390x so it can migrate to testing and be available on rest of the archs. Thanks, Nilesh

Bug#1027386: [Debian-med-packaging] Bug#1027335: pairtools -- FTBFS in unstable

2022-12-31 Thread Nilesh Patra
Hi Etienne, On Fri, 30 Dec 2022 16:01:00 +0100 =?utf-8?Q?=C3=89tienne?= Mollier wrote: > Nilesh Patra, on 2022-12-30: > > File "/<>/setup.py", line 130, in > > ext_modules=get_ext_modules(), > > ^ > > File

Bug#1027415: ITP: python-bioframe -- library to enable flexible, scalable operations on genomic interval dataframes

2022-12-30 Thread Nilesh Patra
Package: wnpp Severity: wishlist X-Debbugs-Cc: nil...@debian.org Subject: ITP: python-bioframe -- library to enable flexible, scalable operations on genomic interval dataframes Package: wnpp Owner: Nilesh Patra Severity: wishlist * Package name: python-bioframe Version : 0.3.3

Bug#1027335: pairtools -- FTBFS in unstable

2022-12-30 Thread Nilesh Patra
Control: severity -1 normal Control: retitle -1 pairtools -- current repo in salsa FTBFS Control: clone -1 -2 Control: reassign -2 python3-pysam 0.20.0+ds-2 Control: retitle -2 pysam -- no definition for bam_dup1 On Fri, Dec 30, 2022 at 08:24:42PM +0530, Nilesh Patra wrote: > On Fri, 30 Dec 2

Bug#1027335: pairtools -- FTBFS in unstable

2022-12-30 Thread Nilesh Patra
On Fri, 30 Dec 2022 20:05:32 +0530 Nilesh Patra wrote: > Source: pairtools > Version: 0.3.0-3.2 > Severity: serious > > Pairtools FTBFS with pysam related error. Looks like > something is off. > > dh_auto_clean > I: pybuild base:240: python3.11 setup.py clean > Tr

Bug#1027335: pairtools -- FTBFS in unstable

2022-12-30 Thread Nilesh Patra
^^^ File "/usr/lib/python3/dist-packages/pysam/__init__.py", line 100, in return [os.path.join(dirname, x + so) for x in pysam_libs] ~~^~~~ TypeError: can only concatenate str (not "NoneType") to str Thanks, Nilesh -- System Informa

Bug#1022167: angelfish: Search engine hard-coded, and having Internet-based home-page is against Debian policy.

2022-12-29 Thread Nilesh Patra
s. And there is also an option for search engine selection in the same search window, which seems to work just fine. Could you confirm this is working for you? -- Best, Nilesh signature.asc Description: PGP signature

Bug#1027138: sqlmodel -- autopkgtests FAIL

2022-12-28 Thread Nilesh Patra
Source: sqlmodel Version: 0.0.8-2 Severity: serious X-Debbugs-Cc: mo...@debian.org Hi, Autopkgtest for new upload of sqlmodel are failing with | # Test inherited indexes |insp: Inspector = inspect(mod.engine) |indexes = insp.get_indexes(str(mod.Hero.__tablename__)) |

Bug#1026590: dask.distributed: FTBFS: RuntimeError: IOLoop is closed

2022-12-27 Thread Nilesh Patra
build/cpython3_3.11_distributed/build/distributed > > copying distributed/metrics.py -> > > /<>/.pybuild/cpython3_3.11_distributed/build/distributed > > copying distributed/lock.py -> > > /<>/.pybuild/cpython3_3.11_distributed/build/distributed > > copying distributed/utils_test.py -> > > /<>/.pybuild/cpython3_3.11_distributed/build/distributed > > copying distributed/sizeof.py -> > > /<>/.pybuild/cpython3_3.11_distributed/build/distributed > > copying distributed/compatibility.py -> > > /<>/.pybuild/cpython3_3.11_distributed/build/distributed > > copying distributed/profile.py -> > > /<>/.pybuild/cpython3_3.11_distributed/build/distributed > > copying distributed/nanny.py -> > > /<>/.pybuild/cpython3_3.11_distributed/build/distributed > > copying distributed/event.py -> > > /<>/.pybuild/cpython3_3.11_distributed/build/distributed -- Best, Nilesh signature.asc Description: PGP signature

Bug#1027063: python3-ormar uninstallable with current sqlalchemy in unstable

2022-12-27 Thread Nilesh Patra
Package: python3-ormar Version: 0.12.0-1 Severity: serious X-Debbugs-Cc: edw...@4angle.com Hi, The pyproject.toml of ormar declares a strictly less than dep for sqlalchemy <1.4.42 but the current sqlalchemy version in unstable is 1.4.45, and hence it is uninstallable at the moment. -- System

Bug#1027062: python3-sqlmodel -- Uninstallable with new sqlalchemy in unstable

2022-12-27 Thread Nilesh Patra
Package: python3-sqlmodel Version: 0.0.8-1 Severity: serious X-Debbugs-Cc: mo...@debian.org Hi, The pyproject.toml of sqlmodel enforces a strictly less than dep on sqlalchemy version 1.4.41 however the current version of sqlalchemy in unstable is 1.4.45, and hence sqlmodel is unstallable. --

Bug#1027061: sqlmodel -- FTBFS with python3.11

2022-12-27 Thread Nilesh Patra
Source: sqlmodel Version: 0.0.8-1 Severity: serious X-Debbugs-Cc: mo...@debian.org Hi, sqlmodel FTBFS with tonnes of: I: pybuild base:240: PYTHONPATH=/<> python3.11 -m pytest -k 'not test_create_db_and_table' = test session starts ==

Bug#1026570: python-streamz: FTBFS: ValueError: I/O operation on closed file.

2022-12-24 Thread Nilesh Patra
> > /<>/.pybuild/cpython3_3.11_streamz/build/streamz/tests > > copying streamz/tests/test_sources.py -> > > /<>/.pybuild/cpython3_3.11_streamz/build/streamz/tests > > copying streamz/tests/test_graph.py -> > > /<>/.pybuild/cpython3_3.11_streamz/build/streamz/tests > > copying streamz/tests/test_dask.py -> > > /<>/.pybuild/cpython3_3.11_streamz/build/streamz/tests > > copying streamz/tests/test_kafka.py -> > > /<>/.pybuild/cpython3_3.11_streamz/build/streamz/tests > > creating > > /<>/.pybuild/cpython3_3.11_streamz/build/streamz/dataframe/tests > > copying streamz/dataframe/tests/test_dataframe_utils.py -> > > /<>/.pybuild/cpython3_3.11_streamz/build/streamz/dataframe/tests > > copying streamz/dataframe/tests/test_dataframes.py -> > > /<>/.pybuild/cpython3_3.11_streamz/build/streamz/dataframe/tests -- Best, Nilesh signature.asc Description: PGP signature

Bug#1020576: please update sage for pari 2.15.0 and gap 4.12.0

2022-12-23 Thread Nilesh Patra
On Sat, 10 Dec 2022 18:07:53 +0530 Nilesh Patra wrote: > On Mon, 28 Nov 2022 21:05:07 + Tobias Hansen wrote: > > On 11/27/22 19:24, Nilesh Patra wrote: > > > On Sun, Nov 27, 2022 at 05:35:17PM +, Tobias Hansen wrote: > > >> On 11/27/22 06:37, Nilesh Patr

Bug#1020435: ruby-prof: FTBFS on ppc64el

2022-12-23 Thread Nilesh Patra
l build failure. I was > suspecting an random test failure, but I didn't see this after trying 50 > builds in a row. In fact, just giving back the build on the buildd made > it succeed. I'm not saying there is no issue, so I am keeping this open > and maybe we will be able to figure it out at some point. > > I hope you don't mind me downgrading this to important. I am able to repro this after building a few times. Not just on ppc, but even on my x86 machine. A similar failure occured on buildd for arm64, see here[1], but it passed after doing a giveback. IMHO, this and probably a couple more tests are flaky tests and need to be taken care of, otherwise they come to bite us later in freeze. [1]: https://buildd.debian.org/status/fetch.php?pkg=ruby-prof=arm64=1.4.3-2=1671790522=0 -- Best, Nilesh signature.asc Description: PGP signature

Bug#1025778: autoremoval

2022-12-23 Thread Nilesh Patra
-bin/bugreport.cgi?bug=1024893;msg=11 [2]: https://release.debian.org/transitions/html/auto-libcifpp.html -- Best, Nilesh

Bug#1022404: raqm: diff for NMU version 0.7.0-4.1

2022-12-21 Thread Nilesh Patra
ld cancel it. It has been 15 days past your upload but it has not reflected yet in the archive. Did you happen to cancel your NMU? -- Best, Nilesh signature.asc Description: PGP signature

Bug#1026492: seqan2: FTBFS: TypeError: a bytes-like object is required, not 'str'

2022-12-21 Thread Nilesh Patra
issue with demo_checker.py handling with > python3 > > I have a patch. will test it and upload I wrote a patch as well, and was going to upload, but you beat me to it, hah :/ My patch is quite similar to yours, though. -- Best, Nilesh signature.asc Description: PGP signature

Bug#1025370: ntcard: ftbfs with nthash 2.3.0

2022-12-19 Thread Nilesh Patra
Control: severity -1 important For the time being, I have vendored the relevant header files from nthash in ntcard itseld and patched the buildsystem a bit to pick those up. Ans so, for now, ntcard would "build" (with a compromise) and so I am downgrading the severity. -- Be

Bug#1024889: ntcard: ftbfs with nthash 2.3.0

2022-12-11 Thread Nilesh Patra
Hi Andreas, On 12 December 2022 12:17:37 am IST, Andreas Tille wrote: >Am Fri, Dec 09, 2022 at 03:12:35PM +0530 schrieb Nilesh Patra: >> > I'm considering reverting the version bump (shame on me I did not tested >> > ntcard before uploading). >> >> I'm pers

Bug#1025658: libboost-python1.74-dev: Python 3.11 changes break loading of boost-python using extensions

2022-12-11 Thread Nilesh Patra
ve verified that the attached patch solves the Python 3.11 incompatibility > of python-pgmagick, allowing it to successfully build, meaning that it is > now able to load its boost-python extensions for the test suite. > > regards > Stuart -- Best, Nilesh signature.asc Description: PGP signature

Bug#1025835: tiledb-py: build-depends on libtiledb-doc

2022-12-10 Thread Nilesh Patra
ok) accordingly. Thanks for the ping. I work on hunderds of packages and I tend to skip updates so this is helpful. -- Best, Nilesh signature.asc Description: PGP signature

Bug#1020576: please update sage for pari 2.15.0 and gap 4.12.0

2022-12-10 Thread Nilesh Patra
On Mon, 28 Nov 2022 21:05:07 + Tobias Hansen wrote: > On 11/27/22 19:24, Nilesh Patra wrote: > > On Sun, Nov 27, 2022 at 05:35:17PM +, Tobias Hansen wrote: > >> On 11/27/22 06:37, Nilesh Patra wrote: > >>> Tobias, since this is done, would you consider to che

Bug#968045: golang-gonum-v1-plot: please make the build reproducible

2022-12-09 Thread Nilesh Patra
On Thu, Dec 08, 2022 at 11:18:56AM -0800, Vagrant Cascadian wrote: > On 2021-07-06, Nilesh Patra wrote: > > On Mon, 01 Mar 2021 13:08:03 - "Chris Lamb" wrote: > >> > Thanks again, but unfortunately this patch breaks the autopkgtests :/ > >> > The

Bug#1025370: ntcard: ftbfs with nthash 2.3.0

2022-12-09 Thread Nilesh Patra
s. -- Best, Nilesh signature.asc Description: PGP signature

Bug#1024954: librcsb-core-wrapper: (autopkgtest) needs update for python3.11: initialization of CorePyWrap raised unreported exception

2022-12-08 Thread Nilesh Patra
Hi again, On Mon, Nov 28, 2022 at 08:05:35PM +0530, Nilesh Patra wrote: > On Sun, 27 Nov 2022 22:26:31 +0100 Paul Gevers wrote: > > Source: librcsb-core-wrapper > > Version: 1.005-10 > > We are in the transition of adding python3.11 as a supported Python > > version [0

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