Bug#1011129: gridengine: FTBFS with OpenJDK 17 due to JDK detection error

. Does this mean SGE is being revived? thanks and regards Afif 1. https://bugs.debian.org/875404 -- Afif Elghraoui | عفيف الغراوي https://afif.ghraoui.name

Bug#995171: need newer release

nd regards Afif -- Afif Elghraoui | عفيف الغراوي https://afif.ghraoui.name

Bug#982407: mark libfabric1 Multi-Arch: same

d team access via Salsa. > Hello, I'm not involved with the package, but I've granted you access and any help is welcome as far as I'm concerned. thanks and regards Afif -- Afif Elghraoui | عفيف الغراوي https://afif.ghraoui.name

Bug#931345: nvchecker: autopkgtest regression in June 2019

tress on our infrastructure until this bug is fixed. > This bug has been fixed for about a week now but nvchecker still appears to be blocked from debci. Does that need to be manually changed? I expected it to be removed automatically once the bug was closed. thanks and regards Afif -- Afif

Bug#953977: gridengine-drmaa1.0: Please install libdrmaa.so.1.0 into standard library dir

On 9/26/21 1:37 PM, Andreas Tille wrote: > Hi Afif, > > On Sun, Sep 26, 2021 at 01:20:34PM -0700, Afif Elghraoui wrote: >>> My guess is that also other packages than python3-drmaa will profit from >>> this. >> >> The thing is that gridengine is not the

Bug#953977: gridengine-drmaa1.0: Please install libdrmaa.so.1.0 into standard library dir

it seems to be the only one in current Debian releases. If we wanted to do this right, I think we'd need to get a virtual package for libdrmaa that gridengine and, for example, slurm could both provide. thanks and regards Afif -- Afif Elghraoui | عفيف الغراوي https://afif.ghraoui.name

Bug#937738: python-et-xmlfile: diff for NMU version 1.0.1-2.1

PMT > I'd have been happy to, but at the time, DPMT was using git-dpm and it didn't seem worth learning to use an unmaintained tool just to package a couple of python modules. Thanks and regards Afif -- Afif Elghraoui | عفيف الغراوي https://afif.ghraoui.name

Bug#947154: ITS: yubioath-desktop due to lack of activity

th-desktop/issues/328#issuecomment-513132914 > Since the package is team-maintained, I think it'd be easier for you to just join the team and continue maintaining the package as part of it. In this case, I don't think an ITS is necessary and you could just do a team upload. thanks and regards Afif -

Bug#931345: nvchecker: autopkgtest regression in June 2019

Control: forwarded -1 https://github.com/lilydjwg/nvchecker/issues/109 On July 2, 2019 2:50:00 PM EDT, Paul Gevers wrote: >Source: nvchecker >Version: 1.3-2 >Severity: important >X-Debbugs-CC: debian...@lists.debian.org >User: debian...@lists.debian.org >Usertags: regression > >Dear

Bug#929011: unblock: singularity-container/3.1.1+ds-1

On June 28, 2019 5:00:00 AM EDT, Ivo De Decker wrote: >Hi, > >On Thu, Jun 27, 2019 at 09:30:09AM -0400, Afif Elghraoui wrote: >> On June 27, 2019 9:06:41 AM EDT, Afif Elghraoui >wrote: >> > >> > >> >On June 27, 2019 5:47:28 AM EDT, Ivo De Decker

Bug#929011: unblock: singularity-container/3.1.1+ds-1

Control: reopen -1 On June 27, 2019 9:06:41 AM EDT, Afif Elghraoui wrote: > > >On June 27, 2019 5:47:28 AM EDT, Ivo De Decker >wrote: >>Hi, >>> >>> So I think the two options we have is (in order of preference): 1. >>> unblock singul

Bug#929011: unblock: singularity-container/3.1.1+ds-1

Control: tag -1 - moreinfo On June 25, 2019 4:16:17 PM EDT, Salvatore Bonaccorso wrote: >Hi Paul, hi Afif, > [...] >> >> Your proposed changes very much do not align with the freeze policy, >so >> you're asking for an exception for a new upstream release. This >package >> is currently listed to

Bug#929662: docker.io: CVE-2018-15664 - upstream backport of patch for 18.09

Hello, Is any help needed on this? Upstream has a backport of the patch for the 18.09 series (same as Unstable): https://github.com/docker/engine/pull/253 Hopefully it won't be too much work to incorporate it. thanks and regards Afif -- Afif Elghraoui | عفيف الغراوي https

Bug#903635: docker.io: use of iptables-legacy is incompatible with nftables-based iptables

and it'd be weird to file a bug on release.debian.org asking to apply a tag to another bug. Again, I think it makes more sense to just lower the severity if you don't think it should affect the release. regards Afif -- Afif Elghraoui | عفيف الغراوي https://afif.ghraoui.name

Bug#926556: unblock: yubikey-personalization/1.19.3-3 - now accepted to Unstable

Control: tag -1 - moreinfo Hello, The package just passed NEW today, so should be ready to go. thanks and regards Afif -- Afif Elghraoui | عفيف الغراوي https://afif.ghraoui.name

Bug#756954: subscription by uploaders

Hello, على ٧‏/٧‏/١٤٤٠ هـ ‫٥:٢٢ م، كتب Raphael Hertzog: > Hello Afif, > > sorry for the delay. I read your reply before and put it aside for later, but reading it again now, I have a comment-- > > On Sun, 03 Feb 2019, Afif Elghraoui wrote: >> The way I was h

Bug#926556: unblock: yubikey-personalization/1.19.3-3

> Thanks for following up. regards Afif -- Afif Elghraoui | عفيف الغراوي https://afif.ghraoui.name

Bug#903635: docker.io: use of iptables-legacy is incompatible with nftables-based iptables

just checking in here as a concerned maintainer of a reverse-dependency threatened with autoremoval. thanks and regards Afif -- Afif Elghraoui | عفيف الغراوي https://afif.ghraoui.name

Bug#929011: unblock singularity-container - unstable vs testing-proposed-updates

=927189 -- Afif Elghraoui | عفيف الغراوي https://afif.ghraoui.name

Bug#929042: singularity-container: CVE-2019-11328)

On May 15, 2019 5:13:24 PM EDT, Salvatore Bonaccorso wrote: >Hi Afif, > >On Wed, May 15, 2019 at 10:57:49PM +0200, Salvatore Bonaccorso wrote: >> Then there is nothing further to be done. > >Oh, actually there is an open point: Is it confirmed that 3.0.3 is not >affected by the CVE? Did you

Bug#929042: closed by Afif Elghraoui (Re: Bug#929042: singularity-container: CVE-2019-11328)

this will hopefully be moot if we can unblock the version now in Unstable. regards Afif -- Afif Elghraoui | عفيف الغراوي https://afif.ghraoui.name

Bug#929042: closed by Afif Elghraoui (Re: Bug#929042: singularity-container: CVE-2019-11328)

eason for making it had nothing to do with this CVE. regards Afif -- Afif Elghraoui | عفيف الغراوي https://afif.ghraoui.name

Bug#921800: nvchecker: FTBFS (failing tests)

On February 8, 2019 7:59:10 PM EST, Santiago Vila wrote: >> It looks like a network access problem. The whole point of this >> package is to check online sources, so it's hard to test it without >> network access. I was able to build it just fine in my schroot, but I >> may have to disable the

Bug#921800: nvchecker: FTBFS (failing tests)

Hello, On February 8, 2019 7:15:55 PM EST, Santiago Vila wrote: >Package: src:nvchecker >Version: 1.3-1 >Severity: serious >Tags: ftbfs > >Dear maintainer: > >I tried to build this package in buster but it failed: >

Bug#911921: yubikey-manager: diff for NMU version 2.0.0-0.1

Hi, nicoo! Good to hear from you. On February 7, 2019 4:26:13 PM EST, Nicolas Braud-Santoni wrote: >On Sat, Feb 02, 2019 at 10:27:33PM -0500, Afif Elghraoui wrote: >> I've prepared an NMU for yubikey-manager (versioned as 2.0.0-0.1) and >> uploaded it to DELAYED/7. Please feel

Bug#875404: src:gridengine - worked around FTBFS by excluding jgdi

/ac79ef75c32e5faf96c5ca8c618955d4c72ffd61 -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#886810: yubioath-desktop: New upstream release: 4.3.2

d, leaving only Simon Josefsson. regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#351856: auto-subscription - perhaps reportbug is a better place to implement this

على ٢٨‏/٥‏/١٤٤٠ هـ ‫١:٥٧ ص، كتب Afif Elghraoui: > Control: subscribe -1 ! > silly me--- I mistook this for a control command since I usually use devscripts' `bts subscribe ...`. Never mind my previous message and apologies for the noise. regards Afif -- Afif Elghraoui | عفيف الغراو

Bug#756954: subscription by uploaders

be willing to implement a patch, but would appreciate a tip about where to look in the code-base. I looked around it and couldn't find a good starting point in the file hierarchy. thanks and regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#911921: yubikey-manager new upstream version

على ٢٠‏/٥‏/١٤٤٠ هـ ‫٨:٣٥ م، كتب Afif Elghraoui: > Hello, > > Is anyone about to update this package or is any help needed? The > current upstream version is now 2.0.0. > There have been three new upstream releases since the last upload of this package that add support for the

Bug#921014: RM: singularity-container [mips mips64el mipsel] -- ROM; no longer builds

Package: ftp.debian.org Severity: normal singularity-container was recently rewritten in Go and this new code base is not building on the named architectures. I'd like to prevent this situation from blocking migration to Testing. thanks and regards Afif

Bug#911921: yubikey-manager new upstream version

Hello, Is anyone about to update this package or is any help needed? The current upstream version is now 2.0.0. regards Afif -- Afif Elghraoui | عفيف الغراوي https://afif.ghraoui.name

Bug#919748: ITP: nvchecker -- new-version checker for software releases

Package: wnpp Severity: wishlist Owner: Afif Elghraoui * Package name: nvchecker Version : 1.3 Upstream Author : lilydjwg * URL : https://github.com/lilydjwg/nvchecker * License : MIT Programming Lang: Python Description : new-version checker

Bug#875404: gridengine and java

. 1. https://salsa.debian.org/hpc-team/gridengine/tree/java10 2. https://arc.liv.ac.uk/trac/SGE/ticket/1642 -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#919026: singularity-container: implausibly old timestamps when creating containers

Package: singularity-container Version: 2.4-1 Severity: normal Control: forwarded -1 https://github.com/sylabs/singularity/issues/1271 $ singularity exec docker://busybox whoami Docker image path: index.docker.io/library/busybox:latest Cache folder set to /home/hayashis/.singularity/docker

Bug#917867: singularity-container: not supportable for Stable

a stable release. 1. https://bugs.debian.org/898154 2. https://lists.debian.org/debian-hpc/2018/12/msg00029.html 3. https://www.sylabs.io/singularity/ -- Afif Elghraoui

Bug#912586: [Debian-med-packaging] Bug#912586:

على ٢٣‏/٢‏/١٤٤٠ هـ ‫١١:٠٤ م، كتب Michael Hudson-Doyle: On Fri, 2 Nov 2018 at 15:30, Afif Elghraoui <mailto:a...@debian.org>> wrote: على ٢٣‏/٢‏/١٤٤٠ هـ ‫٩:٥٣ م، كتب Michael Hudson-Doyle: > I don't understand this change: > https://salsa.debian.org/med-te

Bug#912586: [Debian-med-packaging] Bug#912586:

would return True if successful, which translated into an exit code of 1 and interpreted as failure. I don't know whether that's still the case. regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#912175: RM: ori -- ROM; unmaintained upstream and not fit for release

Package: ftp.debian.org Severity: normal The latest upstream commit is from late 2016 [1]. The RC bug related to openssl 1.1 has never been addressed [2,3]. regards Afif 1. https://bitbucket.org/orifs/ori/commits/all 2. https://bugs.debian.org/828481 3.

Bug#828481: ori: FTBFS with openssl 1.1.0

على ٣‏/٢‏/١٤٤٠ هـ ‫٤:٣٣ م، كتب Moritz Mühlenhoff: On Fri, Oct 13, 2017 at 12:52:55AM -0400, Afif Elghraoui wrote: What's the status? ori hasn't been uploaded since 21 months, is there any progress? There's been no development activity upstream since then either. I think it's time I

Bug#898034: Acknowledgement (adduser: [INTL:de] updated German debconf translation)

ations as part of it and do this today. regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#902132: [Debian-med-packaging] Bug#902132: falcon: FTBFS since python-networkx version 2.1-1; fails in test suite

Hello, On September 12, 2018 5:30:59 AM EDT, Andreas Tille wrote: >Hi Alex, > >On Wed, Sep 12, 2018 at 10:55:20AM +0200, Alex Mestiashvili wrote: >> Well, according upstream, current repository is not active anymore: >> >> >> Oh, sorry. We are no longer mirroring our internal FALCON repo here.

Bug#903015: stretch-pu: package gridengine/8.1.9+dfsg-4

On July 9, 2018 12:18:06 PM EDT, "Adam D. Barratt" wrote: >On 2018-07-09 04:16, Afif Elghraoui wrote: >> على الأحد 8 تـمـوز 2018 ‫14:38، كتب Adam D. Barratt: >>> > >I've filed #903406 with a small patch that at least builds successfully > >on ab

Bug#903015: stretch-pu: package gridengine/8.1.9+dfsg-4

gridengine build system wasn't looking in the right place anymore and thought the java team would know more about it. I didn't pursue it further, though. regards Afif 1. https://lists.debian.org/debian-java/2017/12/msg00050.html -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#903015: stretch-pu: package gridengine/8.1.9+dfsg-4

على السبت 7 تـمـوز 2018 ‫07:35، كتب Adam D. Barratt: > With the above change, please feel free to upload. Uploaded. I hope source-only is fine. Thanks and regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#903192: [Debian-med-packaging] Bug#903192: sniffles: FTBFS in buster/sid (dh_installman: Cannot find "debian/sniffles.1")

npage is defined in debian/manpages, but is created during the package build. I've worked around that, but it's still curious why the error is not consistent without `-B`. regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#903015: stretch-pu: package gridengine/8.1.9+dfsg-4 - complete diff

) + + -- Afif Elghraoui Thu, 05 Jul 2018 00:38:58 -0400 + gridengine (8.1.9+dfsg-4) unstable; urgency=low * Patch upstream source to declare prerequisites for pdc (Closes: #846770) diff --git a/debian/gridengine-qmon.install b/debian/gridengine-qmon.install index 99b6cf17d..59ddc17f0 100644

Bug#903015: stretch-pu: package gridengine/8.1.9+dfsg-4

/debian-hpc/2018/06/msg00021.html >From c416d2f88fa6ee1518d95e37a65856c571994bc0 Mon Sep 17 00:00:00 2001 From: Afif Elghraoui Date: Sun, 11 Mar 2018 17:07:27 -0400 Subject: [PATCH] Use correct paths to qmon pixmaps Closes: #892296 --- debian/gridengine-qmon.install | 2 +- debian/grideng

Bug#900485: [Debian-med-packaging] Bug#900485: python-pbcore: FTBFS and Debci failure with NumPy 1.14

On June 26, 2018 3:45:49 AM EDT, Andreas Tille wrote: >On Mon, Jun 25, 2018 at 09:52:50AM -0400, Afif Elghraoui wrote: >> I think we can give 1.5.0 a try, but it might have the same problem. > >Since it builds successfully I've just uploaded. > Ok >> > (And wh

Bug#900485: [Debian-med-packaging] Bug#900485: python-pbcore: FTBFS and Debci failure with NumPy 1.14

On June 25, 2018 5:07:48 AM EDT, Andreas Tille wrote: >Hi Afif, > >On Mon, Jun 25, 2018 at 03:41:11AM -0400, Afif Elghraoui wrote: >> >pbcore.io.dataset.DataSetIO: ERROR: Invalid file produced: >> >/tmp/tmpveTAsa.subreadset.xml >> > >> >Before I

Bug#900485: [Debian-med-packaging] Bug#900485: python-pbcore: FTBFS and Debci failure with NumPy 1.14

Hi, Andreas On June 25, 2018 3:32:00 AM EDT, Andreas Tille wrote: >Hi Graham, > >On Sun, Jun 24, 2018 at 08:48:32PM +0200, Graham Inggs wrote: >> Control: tags -1 + patch > >thanks for the patch. Since we are targeting in Git at version 1.4.2 I >adapted the patch to this version and it works

Bug#896642: RM: sniffles [mips hppa powerpc sparc64] -- ROM; does not function

either, and the lack of an updated build on mips is now preventing migration to testing. Thanks and regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#893133: Could we maintain compatibility with older debhelpers to ease backporting

Control: tag -1 + confirmed Hi, Yaroslav, > >Thanks for maintaining and updating the package through the latest >releases. >But I wondered -- since you also had similar (minor but still) pains -- >could >we retain/maintain compatibility with previous versions of debhelper, >e.g. 10 >(or even

Bug#887192: singularity-container should depend on e2fsprogs explicitly

On February 14, 2018 7:04:32 AM EST, Andreas Henriksson wrote: > >Would be great if you could have this fixed ASAP. If you're busy >feel free to just ask for help with a non-maintainer upload in >the meantime and I'll make it happen. > For me, that would be maybe tomorrow

Bug#887192: singularity-container should depend on e2fsprogs explicitly

t's no problem to you, we can go ahead and make it happen. Thanks and regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#890220: ITP: assemblytics -- detect and analyze structural variants from a genome assembly

Package: wnpp Owner: Afif Elghraoui <a...@debian.org> Severity: wishlist * Package name: assemblytics Version : 0~20170131 Upstream Author : Maria Nattestad <mnatt...@cshl.edu> * URL : http://assemblytics.com * License : MIT Programming Lan

Bug#889790: RM: hinge [i386 armel armhf mips mipsel s390x] -- ROM; not installable

on these architectures in Unstable will still prevent migration once the time limit elapses [1]. Thanks and regards Afif https://qa.debian.org/excuses.php?package=hinge -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#889613: ITP: swiglpk -- Plain Python bindings for the GNU Linear Programming Kit

Package: wnpp Owner: Afif Elghraoui <a...@debian.org> Severity: wishlist * Package name: swiglpk Version : 1.4.4 Upstream Author : The Novo Nordisk Foundation Center for Biosustainability * URL : https://github.com/biosustain/swiglpk * License

Bug#889607: no such package as sse-support, just sse2/3/4.2

ready did an upload before filing this bug, so it's now showing as BD-Uninstallable on i386. Thanks and regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#889611: ITP: optlang -- sympy-based mathematical programming language

Package: wnpp Owner: Afif Elghraoui <a...@debian.org> Severity: wishlist * Package name: optlang Version : 1.3.0 Upstream Author : Novo Nordisk Foundation Center for Biosustainability * URL : http://optlang.readthedocs.org/ * License : Apache Progr

Bug#889607: RM: nanopolish [i386] -- ROM; sse-support not available

Package: ftp.debian.org Severity: normal The package would not migrate to testing because it was not installable on i386 for lack of sse-support. Thanks and regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#844377: apt-get and apt also affected?

Hello, On December 22, 2017 9:14:14 PM EST, Thomas Lange wrote: >Are apt-get and apt are also affected by the different behaviour when >using -t release or package/release? > That is how they behave, and your treating them as equivalent is the problem. >You may

Bug#881360: [Debian-med-packaging] Bug#881360: /usr/lib/htslib unused by bcftools anyway

Hi, Andreas, On December 11, 2017 8:32:53 AM EST, Andreas Tille wrote: >Hi Afif, > >this message and the previous one hit me in a time of beeing busy with >other stuff. I've removed the files in question now and closed the >bug. > >Kind regards > >Andreas. > >PS: You

Bug#864376: falcon: properly fix test failure: Task Node(1-preads_ovl/m_00001) failed with exit-code=256

Hi, Andreas, On December 11, 2017 6:55:17 AM EST, Andreas Tille wrote: >Hi Afif, > >there is a new upstream version which I intended to give a chance >whether this issue might be fixed. Unfortunately the get-orig-source >script fails - somehow the submodules are not cloned

Bug#883047: [Debian-med-packaging] Bug#883047: canu: Build-depend on mhap to avoid uninstallable binaries

On December 1, 2017 9:12:19 PM EST, Steve Langasek <steve.langa...@canonical.com> wrote: >On Fri, Dec 01, 2017 at 03:37:47AM -0500, Afif Elghraoui wrote: >> I believe this is >primarily >> an issue with wanna-build queuing the package for building on those >>

Bug#883047: [Debian-med-packaging] Bug#883047: canu: Build-depend on mhap to avoid uninstallable binaries

Hi, Steve, On November 29, 2017 12:50:55 AM EST, Steve Langasek wrote: >In Ubuntu, we observed that the canu package was not releasable because >it >generates per-architecture binary packages with a transitive dependency >on >libssw-java, which is only available on

Bug#881360: [Debian-med-packaging] /usr/lib/htslib unused by bcftools anyway

Hi, Andreas, I'm not sure if you saw my message below when I sent it originally. I'd appreciate if you could take a look at this issue. regards Afif على الثلاثاء 14 تشرين الثاني 2017 ‫10:10، كتب Afif Elghraoui: > Hi, Andreas, > > On November 14, 2017 7:08:59 AM EST, John

Bug#881360: [Debian-med-packaging] Bug#881360: /usr/lib/htslib unused by bcftools anyway

/lib/htslib anyway: > >bcftools (1.5-1~exp1) experimental; urgency=medium > > [ Afif Elghraoui ] > * Update packaging for new build system >[snip] >-- Afif Elghraoui <a...@debian.org> Mon, 07 Aug 2017 20:06:52 -0400 > > Would you mind reverting the problematic cha

Bug#827076: Processed: raise severity of openssl-1.1-trans blockers

On November 13, 2017 2:43:16 PM EST, ow...@bugs.debian.org wrote: >Processing commands for cont...@bugs.debian.org: > >> # Raising the severity of bugs which are blocking the removal of >> # libssl1.0.2 which we want gone for Buster. >> #

Bug#879886: [Debian-med-packaging] Bug#879886: libhts2: libhts2 needs to handle ABI changes

On November 9, 2017 6:20:03 PM EST, Diane Trout wrote: > [...] > >Anyone want to review? or should I go ahead and release? > I think you can release. However, it appears the changelog wasn't updated in git since the last upload [1] you'll need to go for a 1.5-3. regards

Bug#879886: libhts2: libhts2 needs to handle ABI changes

On November 9, 2017 3:06:32 AM EST, Mattia Rizzolo wrote: >On Wed, Nov 08, 2017 at 04:58:49PM -0800, Diane Trout wrote: >> > > I was wondering if we should split the cram headers into a >> > > libhts-private-dev so we can at least track what is depending on >> > > the >> > >

Bug#879886: [Debian-med-packaging] Bug#879886: libhts2: libhts2 needs to handle ABI changes

On November 9, 2017 2:32:56 AM EST, Diane Trout <di...@ghic.org> wrote: >On Thu, 2017-11-09 at 02:03 -0500, Afif Elghraoui wrote: >> > - TODO Split private cram headers off into a new libhts-private-dev >> > package >> >> I'd rather be in favor of

Bug#879886: [Debian-med-packaging] Bug#879886: libhts2: libhts2 needs to handle ABI changes

Hi, Diane, Thanks for working on this. On November 8, 2017 7:58:49 PM EST, Diane Trout wrote: >One of the htslib developers filed a new bug, > >https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=881170 > >asking us to not make their private libraries public. His suggestions >are

Bug#879886: [Debian-med-packaging] libhts2: libhts2 needs to handle ABI changes

ould start by running "git log -S symbolname" which will > usually provide an explanation, rather than assuming that something > terrible has happened. regards Afif 1. https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=822701#56 -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#879886: [Debian-med-packaging] libhts2: libhts2 needs to handle ABI changes

على الجمعـة 27 تشرين الأول 2017 ‫09:55، كتب Mattia Rizzolo: > On Fri, Oct 27, 2017 at 12:52:31AM -0400, Afif Elghraoui wrote: [...] > > What would have been good to prevent the current breakage that has been > brought to my attention (samtools), what happened is that the newe

Bug#879886: [Debian-med-packaging] Bug#879886: Bug#879886: libhts2: libhts2 needs to handle ABI changes

1.4 release if I remember correctly. That's all I can say about this; I don't actually work on the htslib packaging myself. regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#871314: [Debian-med-packaging] Bug#871314: pysam 0.12 depends on libhts2 1.5

Hi, Diane, On October 26, 2017 1:41:30 PM EDT, "Trout, Diane E." wrote: >The new version of pysam 0.12 requires libhts2 1.5. > >Unfortunately pysam 0.12 just migrated to testing, and libhts2 was >blocked from migrating by this bug because it breaks pysam 0.11 > > Oh, yeah,

Bug#878964: ITP: python-easydev -- common utilities to ease the development of Python packages

Package: wnpp Severity: wishlist Owner: Debian Med Team Control: block 878962 by -1 Control: block 878963 by -1 * Package name: python-easydev Version : 0.9.35 Upstream Author : Thomas Cokelaer * URL :

Bug#878963: ITP: python-colormap -- ease manipulation of matplotlib colormaps and color codecs

Package: wnpp Severity: wishlist Owner: Debian Med Team Control: block 878962 by -1 * Package name: python-colormap Version : 1.0.1 Upstream Author : Thomas Cokelaer * URL : https://colormap.readthedocs.io/ * License

Bug#878962: ITP: hinge -- long read genome assembler based on hinging

Package: wnpp Severity: wishlist Owner: Debian Med Team * Package name: hinge Version : 0.5 Upstream Author : Govinda Kamath, Fei Xia, Ilan Shomorony, Thomas Courtade, and

Bug#828481: ori: FTBFS with openssl 1.1.0

se react before that happens. > > [0] https://bugs.debian.org/871056#55 > I've just followed up with upstream, who would actually like to remove the dependency on openssl altogether. regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#868958: [Debian-med-packaging] bcftools FTBFS on 32bit: test failures

oing to add it back in. It'd also be extremely helpful if you could forward your patch upstream. Many thanks and regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#871083: [Debian-med-packaging] Bug#871083: python-pysam: FTBFS: Test failures

.7 > package. Your package is on said list. > > So for the new python2.7 to migrate to testing the FTBFS in python-pysam > needs to be fixed. Okay, I've just skipped that one failing test and uploaded the new version in order to move things along. regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#871083: [Debian-med-packaging] Bug#871083: python-pysam: FTBFS: Test failures

على السبت 30 أيلول 2017 ‫16:43، كتب Afif Elghraoui: > I'll see if I can do it today, I see Andreas Tille is on top of this. The current issue right now is this upstream bug we encounter when trying to build the latest upstream version: https://github.com/pysam-developers/pysam/issues/

Bug#871083: [Debian-med-packaging] Bug#871083: python-pysam: FTBFS: Test failures

er dependencies (htslib/samtools). regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#868568: [Adduser-devel] Bug#868568: adduser - deluser command says user has running processes when user has a custom UID assigned

ore reassigning this ticket to the passwd package, which is where userdel comes from. You should hear from its maintainers as a result. regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#837871: no need for addgroup: The group `input' already exists as a system group. Exiting. messages

I did here, will allow its closure to properly notify the submitters that the problem they encountered is resolved. Let me know if there are further issues. regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#845925: autopkgtest customize script for vmdebootstrap is unable to resolve httpredir.debian.org

Hello, all, I was experiencing this problem and was able to get around it by additionally passing `--no-systemd-networkd --enable-dhcp` to vmdebootstrap. regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#860199: incron: NMU/move to collab-maint

Hi, Emmanuel, Would you mind if I NMU the package to update to the latest upstream, as well as move the git repository to collab-maint? Thanks and regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#823379: Found Maintainer for Elmer

ter time) > The last I heard, he had joined the Debian Science alioth group, but I didn't follow-up either. Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#870637: [Pkg-gridengine-devel] gridengine-client: qstatus does not set default value for SGE_ROOT

Hi, Liang, Thanks for the report. I suspect there are other tools that expect SGE_ROOT to be defined globally as well. I'll have to see about whether they should not expect this or whether these variables should just be defined globally. regards Afif -- Afif Elghraoui | عفيف الغراوي http

Bug#855600: src:nlopt: Please provide binary package for cxx library

Hi, Sergey, على السبت 8 تـمـوز 2017 ‫07:11، كتب Sergey B Kirpichev: > On Mon, 20 Feb 2017 22:03:19 -0800 Afif Elghraoui <a...@debian.org> wrote: >> Anyway, I see the packaging is still in SVN. I'll switch it to Git and >> prepare a team upload. > Please ask fi

Bug#863929: falcon: FTBFS: Test failures ("Task Node(0-rawreads/job_0001) failed with exit-code=256")

e on the weekends, but I don't think this will mean much for falcon. >> I'll open a new (non-RC) bug to make it visible that this is >> an issue that should be investigated properly. > > Thanks a lot for your last minute rescue action. I'll commit your > changes to Git (however, if you used

Bug#863929: [Debian-med-packaging] Bug#863929: falcon: FTBFS: Test failures ("Task Node(0-rawreads/job_0001) failed with exit-code=256")

any actual use (de novo genome assembly), it will require more memory than would be addressable on a 32-bit system. It's not really worth the time and effort to debug that. I don't know of an alias like !32bit for the Architecture field in debian/control to exclude that. regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#859660: [Debian-med-packaging] Bug#859660: artemis running issue

) and report back. regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#36019: [Adduser-devel] Bug#36019: Status of Hooks for adduser/deluser?

hes for some of those, but I haven't gotten around to setting up a testing environment to verify them and my spare time has been extremely limited. regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#61210: [Adduser-devel] Bug#61210: Comment

Hi, على الإثنين 3 نيسـان 2017 ‫17:31، كتب Patrik Schindler: > > Perhaps this is a sight duplicate to Bug 36019? > I don't think so. 36019 could be said to be a blocker for this one, though. Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#805754: Processed: retitle to RFP: ensembl-tools -- Ensembl tools for genomic data processing

or a while. It involved packaging some other Ensembl APIs and seems to be difficult to keep up with. regards Afif -- Afif Elghraoui | عفيف الغراوي http://afif.ghraoui.name

Bug#856671: gridengine: SGE_ARCH not set in /etc/default/gridengine

Package: gridengine Version: 8.1.9+dfsg-1 Severity: normal Control: tag -1 + newcomer The gridengine package does not set the SGE_ARCH variable, which is used in, for example, qmake as a default architecture resource request. If it isn't set, you get an error and have to explicitly request an

Bug#855600: src:nlopt: Please provide binary package for cxx library

على الإثنين 20 شباط 2017 ‫08:39، كتب Afif Elghraoui: > the compiled > library only works for C++. We need separate packages for the C++ library. correction: ^^^ C Anyway, I see the packaging is still in SVN. I'll switch it to Git and prepare a team upload. regards Afif --

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