Control: tag -1 pending
Hello,
Bug #1002969 in golang-github-smallstep-certificates reported by you has been
fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:
last release,
I NMU'd what I found working. The fix seems to be already there on your
corresponding github repository
here[1]
I have attached the debdiff of my NMU, could you please consider merging?
[1]:
https://github.com/jaldhar/Module-Starter-Plugin-CGIApp/commit/73ec81f8e648fbda430f3f81ba5
t NMU'd the fix.
debdiff is attached with this email, please consider applying
Regards,
Nilesh
diff -Nru dulwich-0.20.31/debian/changelog dulwich-0.20.31/debian/changelog
--- dulwich-0.20.31/debian/changelog2022-01-23 18:05:56.0 +
+++ dulwich-0.20.31/debian/changelog2022-01-29 23:36:01
and 1138 not upgraded.
Inst fpga-icestorm-chipdb (0~20220102git3b7b199-3 Debian:testing [all])
Conf fpga-icestorm-chipdb (0~20220102git3b7b199-3 Debian:testing [all])
Could you please clarify this bug report a little?
Regards,
Nilesh
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Sandro,
Looks like Yunqiang has a patch that fixed the problem.
Can you add this patch and upload?
Would you allow them to NMU? (See the mail below)
Thanks,
-Nilesh
On Tue, 25 Jan 2022 16:58:34 +0800 Yunqiang Su wrote:
> On Sat, 22 Jan 2022 18:23:13 +0800 YunQiang Su wrote:
> > O
Hi Daniel,
I just NMU'd a a fix for this, since this was blocking mypy transition.
Debdiff is attached with this email, could you please apply this upstream
and/or in the deb package?
Regards,
Nilesh
diff -Nru python-sop-0.2.0/debian/changelog python-sop-0.2.0/debian/changelog
--- python-sop
Control: severity -1 important
On Mon, 10 Jan 2022 15:53:01 +0530 Nilesh Patra wrote:
> Andreas,
>
> On Thu, 30 Dec 2021 09:07:08 +0100 Andreas Tille wrote:
> > Control: tags -1 upstream
> > Control: forwarded -1 https://github.com/simd-everywhere/simde/issues/936
>
C to build with SIMDe in
Debian
So I think you could simply do so and reduce the severity of the bug after a
re-title since it is not exactly a 'fix' but a workaround
What do you think?
Regards,
Nilesh
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not in archive yet)
is choking with similar errors.
Since you maintain both hfd-service (which has the above bug report) and
qtfeedback5-dev, I wonder if you have some ideas?
Do let us know.
Regards,
Nilesh
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forwarded -1 https://github.com/chanzuckerberg/shasta/issues/274
Hopefully upstream fixes it soonish
Regards,
Nilesh
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Regards,
Nilesh
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rt of a templated reply that you see above which is
reasonable since there are so many similar bugs,
if you see other bugs that break autopkgtests, you will find the wording to be
awfully similar. For example:
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=996279
Hence, we need to re-assign an
?
Actually because of the current state of numba, several reverse depends are
FTBFS so it's
bit urgent to push. Apologies for getting on your nerves, though.
Regards,
Nilesh
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Control: tag -1 pending
Hello,
Bug #1001936 in r-cran-rbibutils reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:
Package: r-cran-rbibutils
Version: 2.2.4-1
Severity: serious
Control: forwarded -1 https://github.com/GeoBosh/rbibutils/issues/8
Dear Maintainer,
rbibutils fails its autopkgtests as given below.
I have fwded this to upstream.
══ Failed tests
Report.
[1]:
https://ci.debian.net/data/autopkgtest/testing/ppc64el/r/r-cran-satellite/17626107/log.gz
[2]: https://ci.debian.net/packages/r/r-cran-satellite/testing/ppc64el/
BR, Nilesh
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e from our us
installing it in
own machines only for testing purposes.
Upstream is dead as well, so this gives me several green flags to
proceed with a removal.
Regards,
Nilesh
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On 15 December 2021 2:36:14 pm IST, Andreas Tille wrote:
>Hi Étienne,
>
>Am Tue, Dec 14, 2021 at 11:13:21PM +0100 schrieb Étienne Mollier:
>> Étienne Mollier, on 2021-12-14:
>> > However, once the sip file is caught, the package fails to build
>> > from source due to various errors in the
On 11 December 2021 8:53:04 pm IST, Andreas Tille wrote:
>Am Sat, Dec 11, 2021 at 02:33:40PM +0530 schrieb Nilesh Patra:
>> On 12/11/21 12:14 PM, Nilesh Patra wrote:
>> > Tests are still failing, see here[1]. It is not a problem of terra
>> > version, as it seems, it i
Hi Tong,
On 12/12/21 1:06 AM, Tong Sun wrote:
Thank you Nilesh for such detailed explanation. Weighted on all the
options, I decided it still needs to go to contrib and have put a note
in d/README.Debian --
https://salsa.debian.org/debian/dbab/-/commit/fa771322e1342c532637e17baa863cca8ac80488
On 12/11/21 12:14 PM, Nilesh Patra wrote:
control: notfixed -1 r-cran-raster/3.5-9-1
Hi Robert,
On 12/11/21 12:10 AM, Nilesh Patra wrote:
On 12/10/21 11:43 PM, Robert J. Hijmans wrote:
The new release of raster should first update terra if indeed it finds an older
version. So let's hope I
control: notfixed -1 r-cran-raster/3.5-9-1
Hi Robert,
On 12/11/21 12:10 AM, Nilesh Patra wrote:
On 12/10/21 11:43 PM, Robert J. Hijmans wrote:
The new release of raster should first update terra if indeed it finds an older
version. So let's hope I am right.
I just uploaded the new version
done-online thing or I need to download something and try to learn
> how to use it?
Sorry, I don't what that's supposed to mean.
> > > Do you need me to upload to mentor first, you can totally take care of
> > > it from salsa?
> >
> > I will manage from salsa.
>
> Thanks, I'll add the reasoning into d/README.Debian once things are settled.
Sure.
Regards,
Nilesh
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On 12/11/21 2:30 AM, Tong Sun wrote:
Oh, thanks a lot Nilesh!
Everything is updated on salsa. pls double check, e.g.:
https://salsa.debian.org/debian/dbab/-/commit/4cd8db27cec918244a9fba3d698a7b0123c9f3f9
Just one query: you reason for moving to contrib is not entirely clear to me.
You wrote
d like some help here. Please update salsa accordingly.
Regards,
Nilesh
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control: notfound -1 r-cran-satellite/1.0.4-1
control: fixed -1 r-cran-raster/3.5-9-1
The new release fixes things for me locally, I will check debci
and close the bug when debci runs the tests.
Please hold on until then.
Regards,
Nilesh
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Control: tag -1 pending
Hello,
Bug #1001410 in python-csb reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:
bian/README.Debian
Regards,
Nilesh
Hi Stefano,
On 12/4/21 9:00 PM, Stefano Rivera wrote:
Hi Nilesh (2021.12.04_15:15:05_+)
Would you have any hint on this?
Is it a bug with the python3 package itself?
You're waiting for python3-tabulate to be patched for Python 3.10
support.
Indeed. I was just being silly as it seems. I
Dear Python team,
Would you have any hint on this?
Is it a bug with the python3 package itself?
Let me know.
Regards,
Nilesh
On Thu, 2 Dec 2021 12:02:59 +0530 Nilesh Patra wrote:
> On Mon, 29 Nov 2021 20:35:40 +0100 Andreas Tille wrote:
> > Am Mon, Nov 29, 2021 at 11:36:33PM +053
Source: python-anndata
Version: 0.7.5+ds-3
Severity: serious
Dear Maintainer,
python-anndata FTBFS, it probably needs changes with new sklearn.
Log pasted below.
Regards,
Nilesh
copying anndata/tests/data/excel.xlsx ->
/<>/.pybuild/cpython3_3.9_anndata/build/anndata/tests/data
dh_
On Mon, 29 Nov 2021 20:35:40 +0100 Andreas Tille wrote:
> Am Mon, Nov 29, 2021 at 11:36:33PM +0530 schrieb Nilesh Patra:
> > I rebuilt with python3.10, and now error is this.
> > Something wrong with pandas?
>
> As far as I understood we need to wait for pandas 1.3 to work
ild-time tests. (python3-pyrle itself
> doesn't run build-time tests.)
I rebuilt with python3.10, and now error is this.
Something wrong with pandas?
Regards,
Nilesh
autopkgtest [23:33:27]: test autodep8-python3: set -e ; for py in $(py3versions
-r 2>/dev/null) ; do cd "$AUTOPKGTES
blem.
> [.. log ..]
This bug is now triggering removals of its reverse-dependencies.
Would you (or any list member) have some bandwidth to take a deeper look into
this?
Let me know.
Regards,
Nilesh
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Control: tag -1 pending
Hello,
Bug #996123 in ruby-api-pagination reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:
On Thu, 7 Oct 2021 00:26:54 +0530 Nilesh Patra wrote:
> Reported and pinged upstream here, pinging on the bug to delay
> testing removal for a bit
>
> https://github.com/biocore/scikit-bio/issues/1757
Looks like it is fixed in upstream commits[1.2]
@Andreas would you consider ch
control: fixed -1 upstream
On Thu, 7 Oct 2021 00:26:54 +0530 Nilesh Patra wrote:
> Reported and pinged upstream here, pinging on the bug to delay
> testing removal for a bit
>
> https://github.com/biocore/scikit-bio/issues/1757
Looks like upstream has fixed this in[1.2]
@Andrea
control: fixed -1 3.1.0+ds-1
control: close -1
Hi Paul,
the latest release of seqan3 seems to work fine:
https://qa.debian.org/excuses.php?package=seqan3
Hence closing the bug
Regards,
Nilesh
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Control: tag -1 pending
Hello,
Bug #997639 in python-keepalive reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:
ot;MHei" suggest to me that something needs to provide
them. Maybe that would fix the first issue too.
Yep, this was a beginners mistake at my end, sorry for the noise.
Just adding a test-dep on poppler-data did the trick.
Thanks a lot for helping out,
Nilesh
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Control: tag -1 pending
Hello,
Bug #998287 in r-cran-pdftools reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:
test-chinese.R:9:2
| 2. └─testthat:::expect_match_(...)
|── Failure (test-chinese.R:13:3): reading Chinese text
─
|nrow(fonts) not equal to 3.
|1/1 mismatches
|[1] 1 - 3 == -2
Thanks,
Nilesh
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Control: tag -1 pending
Hello,
Bug #998237 in arb reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:
Control: tag -1 pending
Hello,
Bug #996138 in ruby-bio reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:
control: reassign -1 dh-r
control: severity -1 important
control: retitle -1 pkg-r-autopkgtest: please use the same number of packages
as release, and not base it on apt lists
Hi Graham,
On Wed, 3 Nov 2021 10:52:04 +0200 Graham Inggs wrote:> On Fri, 29
Oct 2021 at 21:15, Nilesh Patra wr
f checking and uploading onto you.
Regards,
Nilesh
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Control: tag -1 pending
Hello,
Bug #997209 in eegdev reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:
ht be
wrong -- would you have any pointers?
Any help is appreciated.
Nilesh
OpenPGP_signature
Description: OpenPGP digital signature
Control: tag -1 pending
Hello,
Bug #997385 in pydicom reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:
Control: tag -1 pending
Hello,
Bug #997266 in trinculo reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:
Control: tag -1 pending
Hello,
Bug #984293 in plink reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:
Control: tag -1 pending
Hello,
Bug #984370 in tvc reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:
Control: tag -1 pending
Hello,
Bug #997122 in assembly-stats reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:
Control: tag -1 pending
Hello,
Bug #997258 in tiddit reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:
]
This is due to missing dep, see Michael's mail below.
So I'm marking this bug as fixed in the latest version to avoid autoremoval.
Hope that is okay.
[1]: https://ci.debian.net/packages/r/r-bioc-deseq2/stable/amd64/
Nilesh
On Fri, 22 Oct 2021 14:05:45 +0200 "Michael R. Crusoe&quo
Hi Alastair,
On Tue, 26 Oct 2021 at 13:27, Alastair McKinstry <
alastair.mckins...@sceal.ie> wrote:
> Hi Nilesh
>
>
>
> Just uploaded a patched csh now.
>
> Apologies I was trying to port a later snapshot of csh but ran into
> porting issues.
>
No worries, and t
forward it upstream?
[1]:
https://salsa.debian.org/science-team/ycm-cmake-modules/-/blob/master/debian/patches/fix-sphinx-build.patch
Thanks,
Nilesh
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Control: tag -1 pending
Hello,
Bug #997408 in libatomicqueue reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:
Control: tag -1 pending
Hello,
Bug #997886 in prottest reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:
Control: tag -1 pending
Hello,
Bug #997215 in canu reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:
Control: tag -1 pending
Hello,
Bug #996407 in proteinortho reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:
but I don't see how this "cleared" NEW? 1.0.1-4 has been rejected
from new, nor do I see any updates a tracker.d.o?
Do I miss something?
And wouldn't new version of libcifpp undergo a proper library transition? -- so
is it not mandated for 1.0.1-4 to be accepted first?
Nilesh
and
un-necessary testing removal noise. -- Hope that's OK
I will ping you once nim migrates, and either ask you to close this bug or take
the liberaty to do so myself.
https://buildd.debian.org/status/fetch.php?pkg=nim=armhf=1.6.0-1=1635249411=0
Thanks for your work,
Nilesh
reopen 993042
fixed 993042 1.6.0-1
close 993042
thanks
Closing with the right version
Nilesh
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this was fixed already.
Can you please upload this with Graham's patch? Since this is triggering a huge
number
of (warnings for) autoremovals
Nilesh
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> Hi Maintainer
>
> As can be seen in reproducible builds [1], csh FTBFS since glibc 2.32
> was uploaded.
> I've attached a patch from Ubuntu where this was fixed already.
Can you please upload this with Graham's patch? Since this is triggering a
huge number
of (warnings for) autoremovals
Nilesh
Control: tag -1 pending
Hello,
Bug #997157 in bedops reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:
On 10/22/21 9:23 PM, Étienne Mollier wrote:
Hi Nilesh,
Nilesh Patra, on 2021-10-22:
looks like C++17 has removed the provision to specify custom
exceptions, and there are a lot of errors like the one above.
In this case, does it makes sense to force C++14 standard
(with chnages in d/rules
Control: tag -1 pending
Hello,
Bug #996226 in ruby-fakeweb reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:
, and
there are a lot of errors
like the one above.
In this case, does it makes sense to force C++14 standard (with chnages in
d/rules or with patches) in such cases and ask upstream to
clean these up? Or do I miss a relatively easy solutions?
Let me know
Nilesh
Control: tag -1 pending
Hello,
Bug #996312 in ruby-librarian reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:
Control: tag -1 pending
Hello,
Bug #996985 in pbdagcon reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:
ing setarch, without that a 32bit on a 64bit system would even be
misdetected as arm64.
Could you please look into fixing this? The new nim is being stalled from
migratig for more than two months now,
and it'd be awesome to have a newer nim in testing. (also for reverse-deps)
Thanks!!!
Nil
More deets: trying with samtools version 1.13 and manually creating this also
fails.
$ samtools index alignment.bam
$ diff alignment.bam.bai alignment.bam.bai_orig
Binary files alignment.bam.bai and alignment.bam.bai_orig differ
Nilesh
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control: forwarded -1 https://github.com/wdecoster/nanoget/issues/26
Not sure what exactly causes this, found a related (unfixed) problem in pysam
here:
https://github.com/pysam-developers/pysam/issues/939
Maybe this is the problem ^^^
Nilesh
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Description: OpenPGP
,
Since you uploaded the latest version of diamond-aligner, could you please
fix the problem in proteinortho?
Maybe passing a '--ignore-warnings' somewhere fixes this, but I do not know
much about
protein sequences, hence would appreciate help.
Thanks,
Nilesh
|
https://ci.debian.net/data
,
Since you uploaded the latest version of diamond-aligner, could you please
fix the problem in proteinortho?
Maybe passing a '--ignore-warnings' somewhere fixes this, but I do not know
much about
protein sequences, hence would appreciate help.
Thanks,
Nilesh
|
https://ci.debian.net/data
On Fri, 15 Oct 2021 19:59:40 +0530 Nilesh Patra wrote:
> Package: qepcad
> Version: 1.74+ds-2
> Severity: serious
> X-Debbugs-Cc: dtorra...@piedmont.edu
>
> Hi Doug,
>
> qepcad fails its autopkgtests on every non-x86 arch as seen here.
> Can you fix this?
>
>
Package: qepcad
Version: 1.74+ds-2
Severity: serious
X-Debbugs-Cc: dtorra...@piedmont.edu
Hi Doug,
qepcad fails its autopkgtests on every non-x86 arch as seen here.
Can you fix this?
https://qa.debian.org/excuses.php?package=qepcad
Nilesh
-- System Information:
Debian Release: bookworm/sid
in
the archive
$ dpkg --compare-versions 8.13.2+ds+~cs26.13.21 lt 8.13.2+ds+~cs30.13.21 &&
echo true
true
So, what should be done then?
@Yadd, team, ideas?
Nilesh
diff --git a/debian/control b/debian/control
index 54e6dd3..a8116d7 100644
--- a/debian/control
+++ b/debian/control
@@ -19,6 +19,7
This is blocked by
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=992676
Pinged the upstream, pinging here on the bug to delay the removal for a
bit
Nilesh
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Reported and pinged upstream here, pinging on the bug to delay
testing removal for a bit
https://github.com/biocore/scikit-bio/issues/1757
Nilesh
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ug since it stalls rmatrix
migration to testing, and many packages need the latest version.
I just fixed the last standing blocker for rmatrix (r-cran-seurat) and
this bug is the last thing that prevents it from going to testing.
Nilesh
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# Reduce severity
severity 995200 important
thanks
As per discussion here[1], we ignored these two tests for now, hence decreasing
the severity, so everything migrates timely.
[1]: https://lists.debian.org/debian-r/2021/09/msg00127.html
Nilesh
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nding to NEW
w/o hooping via NEW again, anyway,
so I find it safe to drop the severity for now.
Let me know?
Nilesh
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Control: severity -1 important
Since package still works, decreasing the severity, it should
be removed in long run however, if it is never back to CRAN
Nilesh
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Description: PGP signature
-allow e-antic
Uploading commands file to ssh.upload.debian.org (incoming: /srv/
upload.debian.org/UploadQueue/)
Picking DM Doug Torrance with fingerprint
803CE41F4DC252ECB5E5F1B9D12B2BE26D3FF663
SCP is deprecated. Please consider upgrading to SFTP.
Uploading nilesh-1632314835.dak-commands to ssh-upload
Enjoy!
/index.html
[3]: https://cran.r-project.org/web/packages/purrrogress/index.html
Nilesh
-- System Information:
Debian Release: 11.0
APT prefers testing
APT policy: (500, 'testing')
Architecture: amd64 (x86_64)
Kernel: Linux 5.10.0-8-amd64 (SMP w/8 CPU threads)
Locale: LANG=en_US.UTF-8, LC_CTYPE
Package: r-cran-gprofiler
Version: 0.7.0-2
Severity: serious
X-Debbugs-Cc: nil...@debian.org
Dear Maintainer,
r-cran-gprofiler has been replaced with r-cran-gprofiler2 and hence the
former should be kept out of testing.
Cheers,
-- System Information:
Debian Release: 11.0
APT prefers testing
Hi Jeremy,
On 9/8/21 8:24 PM, Jeremy Sowden wrote:
>> [1] https://bugs.debian.org/978891
>
> Try this patch.
Thank you very much, works perfectly!
I just uploaded with your patch applied.
Nilesh
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icient than
> waiting for upstream to fix the new bug.
>
Thanks!
> Is there any replacement for the missing import?
>
No idea.
@Ole, would you know?
Nilesh
ves/python3-skbio_0.5.6-4_amd64.deb
>
> I just fixed cutesv, leaving this as a reminder to also fix skbio.
^^
Hi Steffen,
this RC bug is triggering removal of several q2-* plugins from testing.
Can you fix this now?
Nilesh
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Hi Ole,
Can I ask you to fix this with sunpy soonish? This is one of the reasons
for keeping sunpy out of testing too
Nilesh
On Wed, 1 Sep 2021 20:20:47 +0300 Adrian Bunk wrote:
> Control: severity -1 serious
> Control: clone -1 -2
> Control: reassign -2 python3-sunpy 3.0.1-3
tely blocking transition of new astropy to testing.
Nilesh
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, will there be a re-build soonish?
Please do let me know
Thanks a lot for your work!
Nilesh
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n the main file
virulencefinder.py:7:from distutils.spawn import find_executable
Nilesh
-- System Information:
Debian Release: bullseye/sid
APT prefers testing
APT policy: (500, 'testing')
Architecture: amd64 (x86_64)
Kernel: Linux 5.7.0-2-amd64 (SMP w/8 CPU threads)
Kernel taint flags: TAINT_
py:15:from distutils.spawn import find_executable
Also, it has a problem with literal comparision (is instead of ==) which
should be fixed
Installation warns about: "if databases is '':"
Nilesh
-- System Information:
Debian Release: bullseye/sid
APT prefers testing
APT policy: (500, 'te
with dependency
error[2] "Using http2=True, but the 'h2' package is not installed"
[1]:
https://salsa.debian.org/med-team/python-duckpy/-/commit/687a66a3be451d5f3458caa956927af7bd9880c5
[2]: https://salsa.debian.org/med-team/python-duckpy/-/jobs/1736252
Nilesh
-- System Information:
Debi
Hello Andrius
On Thu, 3 Jun 2021 at 13:10, Andrius Merkys wrote:
> Hi Nilesh,
>
> On 2021-06-02 19:29, Nilesh Patra wrote:
> > Nauty fails to cross build due to two reasons:
> >
> > 1. It uses AC_RUN_IFELSE testing which cannot heppen during cross bu
ull reply here[1]
[1]: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=988296#10
Nilesh
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