Hello,
On May 30, 2019 5:51:05 AM EDT, Sascha Steinbiss wrote:
>
>Hi Steffen,
>
>> I have no exact idea why alignment tools are all given such short
>names.
>> We have http://last.cbrc.jp/ as last-align with is. Should I do the
>same
>> for wham and name the package wham-align?
>
>That's what I
Hi, Andreas
On May 6, 2019 10:48:07 AM EDT, Andreas Tille wrote:
>Hi folks,
>
>as you might have noticed I have registered
>
>https://wiki.debian.org/SummerOfCode2019/Projects#SummerOfCode2019.2FApprovedProjects.2FCIforDebianMed.Continuous_Integration_for_biological_applications_inside_Debian
>
>
Hello,
على ٣٠/٥/١٤٤٠ هـ ٢:١٦ ص، كتب Andreas Tille:
> Hi Afif,
>
> please lets move this to the list I guess it is fine to quote your
> non-privat text here.
Fine with me.
>
> On Tue, Feb 05, 2019 at 01:03:26AM -0500, Afif Elghraoui wrote:
>>
>> The
>> p
On October 11, 2018 11:14:35 AM EDT, Andreas Tille wrote:
>Hi Afif,
>
>On Thu, Oct 11, 2018 at 09:27:16AM -0400, Afif Elghraoui wrote:
>> >
>> >#!/bin/sh
>> >variantCaller --algorithm=arrow $*
>> >
>> >while unanimity installs a compiled bi
Hello,
On October 11, 2018 8:06:26 AM EDT, Andreas Tille wrote:
>Hi,
>
>package unanimity[1] now builds and creates the binary package
>python-consensuscore2 which in turn is needed to build the latest
>version of pbgenomicconsensus[2]. I realised that both packages are
>installing a tool /usr/b
Hi, all
There's still a problem with the bundled src/dbmalloc.h. I had emailed about
this before--the summary is that I had tracked down the author of this file and
he agreed to distribute it under the MIT license.
I had forwarded the correspondence with to you privately (since I don't think
he
Hi, Andreas
On July 19, 2018 5:36:15 AM EDT, Andreas Tille wrote:
>Hi Afif,
>
>in my attempt to fix Vcs-fields and other issues in packages that were
>not uploaded a long time I stumbled upon pbdagcon[1]. In my latest
>commit[2] I managed to convert d/watch to git mode. However, git mode
>does
Hello,
We have one more case of an arch:all package held up in testing because
of installability issues on i386 due to a dependency on bwa. Can smalr
be allowed to migrate to Testing?
https://qa.debian.org/excuses.php?package=smalr
Thanks and regards
Afif
--
Afif Elghraoui | عفيف الغراوي
On April 2, 2018 5:19:36 PM EDT, Andreas Tille wrote:
>Hi,
>
>when trying to fix UDD importer I stumbled upon duplicated repositories
>on salsa. I removed the duplicates leaving the repository name
>matching
>the source package name. I deleted
>
> kmer-tools (and left the duplicate kmer)
>
On March 13, 2018 1:28:49 PM EDT, Andreas Tille wrote:
>Hi Afif,
>
>On Tue, Mar 13, 2018 at 09:34:41AM -0400, Afif Elghraoui wrote:
>> >It seems these can be deleted since they never had any purpose on
>> >Alioth. However, if you think that's a problem of t
Hi, Andreas,
On March 13, 2018 4:20:23 AM EDT, Andreas Tille wrote:
>Hi Afif,
>
>I'm currently busy to rewrite the Blends metadata gatherer to check the
>repositories on Salsa. This seems to be a sensible check whether the
>migration from Alioth went properly. So I have spotted some broken
>rep
على الأحد 11 آذار 2018 16:04، كتب Afif Elghraoui:
>
>
> على الأحد 11 آذار 2018 14:04، كتب Ghislain Vaillant:
>> Could someone upload simpleitk/1.0.1-2 [1], please?
>
> I'll get it.
>
I'm getting this lintian error:
E: simpleitk source: missing-notice-f
على الأحد 11 آذار 2018 14:04، كتب Ghislain Vaillant:
> Could someone upload simpleitk/1.0.1-2 [1], please?
I'll get it.
Thanks and regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
use for the Maintainer field and then all the BTS
interaction is with the same address. Not really a big deal in any case;
Others have put debian-med@l.d.o in Owner in the past.
Thanks for all your work
regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
;
Many thanks, Sascha!
> Do we also want the automatic tag-pending assignment hook?
I would say so. I think the only reason we didn't have them before was
that nobody got around to adding it.
Thanks and regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
Hi, Andreas
On February 9, 2018 12:27:33 PM EST, Andreas Tille wrote:
>Hi,
>
>I just createt the Debian Med team on Salsa to start the migration of
>our packages.
>
>Kind regards
>
> Andreas.
>
>- Forwarded message from Debian GitLab
>-
>
>Date: Fri, 09 Feb 2018 17:22:23 +
>Fro
y pushed and tagged to the packaging repository and has been
> validated on debomatic.
>
Done.
Thanks and regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
tophat goes, I think the only reason we have a
problem here is because upstream renamed the program. If hisat is the
continuation of tophat and they just made tophat 3.x and 4.x, we'd right
now have the latest in the archive and the older versions would be in
snapshot.debian.org. Thi
On December 20, 2017 5:17:20 AM EST, Michael Crusoe
wrote:
>2017-12-16 10:18 GMT+02:00 Afif Elghraoui :
>
>> Hi, all,
>>
>> Given the statement from the website [1]
>>
>> > Please note that TopHat has entered a low maintenance, low support
>> >
Hello,
On December 17, 2017 8:35:21 PM EST, "Steffen Möller"
wrote:
>Hello,
>
>On 16.12.17 22:15, Andreas Tille wrote:
>> Hi Afif,
>>
>> On Sat, Dec 16, 2017 at 12:31:28PM -0800, Afif Elghraoui wrote:
>>>> Since I'm not a user of all this s
Hi, Andreas,
On December 16, 2017 1:15:16 PM PST, Andreas Tille wrote:
>Hi Afif,
>
>On Sat, Dec 16, 2017 at 12:31:28PM -0800, Afif Elghraoui wrote:
>> >Since I'm not a user of all this software I do not have any
>objections.
>> >However, I wonder whether w
On December 16, 2017 1:31:01 AM PST, Andreas Tille wrote:
>Hi Afif,
>
>On Sat, Dec 16, 2017 at 03:18:05AM -0500, Afif Elghraoui wrote:
>>
>> Are there any objections?
>
>Since I'm not a user of all this software I do not have any objections.
>However, I wonde
tps://ccb.jhu.edu/software/tophat/index.shtml
2. https://twitter.com/lpachter/status/937055346987712512
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
On November 9, 2017 6:20:03 PM EST, Diane Trout wrote:
>
[...]
>
>Anyone want to review? or should I go ahead and release?
>
I think you can release. However, it appears the changelog wasn't updated in
git since the last upload [1] you'll need to go for a 1.5-3.
regards
Afif
1.
http://m
On November 9, 2017 3:06:32 AM EST, Mattia Rizzolo wrote:
>On Wed, Nov 08, 2017 at 04:58:49PM -0800, Diane Trout wrote:
>> > > I was wondering if we should split the cram headers into a
>> > > libhts-private-dev so we can at least track what is depending on
>> > > the
>> > > non-public api.
>
>C
On November 9, 2017 2:32:56 AM EST, Diane Trout wrote:
>On Thu, 2017-11-09 at 02:03 -0500, Afif Elghraoui wrote:
>> > - TODO Split private cram headers off into a new libhts-private-dev
>> > package
>>
>> I'd rather be in favor of restoring the bundled
Hi, Diane,
Thanks for working on this.
On November 8, 2017 7:58:49 PM EST, Diane Trout wrote:
>One of the htslib developers filed a new bug,
>
>https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=881170
>
>asking us to not make their private libraries public. His suggestions
>are fairly similar t
على الخميس 2 تشرين الثاني 2017 04:59، كتب Ghislain Vaillant:
> Hi Afif, thanks for taking care of the review (and uploading dcm2niix).
>
No problem. I'm sorry I couldn't do it sooner.
> On 02/11/17 02:05, Afif Elghraoui wrote:
>> Based on the Python policy, the pyt
/debian-med/simpleitk.git
>
2.
https://www.debian.org/doc/packaging-manuals/python-policy/build_dependencies.html
3. https://lists.debian.org/debian-devel/2017/11/msg3.html
4.
https://anonscm.debian.org/cgit/debian-med/python-pysam.git/tree/debian/rules?id=5897693255ab6a36fb69cfc5bc096c65973f5f47#n2
Hello,
On October 25, 2017 5:03:23 PM EDT, Maximilian Haeussler
wrote:
>Andreas: If clustal, cufflinks, phylip, paml and many other
>bioinformatics packages are just fine in the non-free repo, couldn't
>we do the same with blat?
>
>http://http.us.debian.org/debian/pool/non-free/c/
>http://http.u
Hi, all,
This just came out. It's about the bioconda project, which packages
bioinformatics software for the cross-platform, user-managed conda package
manager.
https://www.biorxiv.org/content/early/2017/10/21/207092
regards
Afif
hat is the policy
> regarding the upload to unstable in this kind of case?
>
I would just merge the changes from the NMU into the git repository. If
the packaging changes are the same as what you already have, then just
include the changelog entry. Then make your new changes follow it.
regards
A
Hi, Andreas,
On September 3, 2017 11:50:05 PM PDT, Andreas Tille wrote:
>Hi Afif,
>
>I noticed that you commited some promising changes. They are depending
>from bcftools 1.5 which is only in experimental. From my point of view
>it makes sense to move bcftools 1.5 to unstable to enable building
On August 29, 2017 2:05:50 PM PDT, Andreas Tille wrote:
>
>Could someone please care since I'm a bit offline-ish this week.
>
I'll take a look maybe tonight or tomorrow. Thanks for the ping--I hadn't been
watching the releases.
regards
Afif
ools. Will you take
> over the sponsoring for the package? If not, please ping me.
>
No, I think that was Sascha who said that (or implied it). I said I was
working on bcftools. I will go ahead and sponsor anyway.
regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
barring any objection.
Thanks and regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
may get auto-removed from
> testing.
Oh, my mistake. I misremembered the 1.4 transition as 1.5.
regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
through updating pysam since my time became scarce and the
time I did spend on it was not so effecient with a slow laptop.
regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
ian example would make use of
snapshot.debian.org as a mirror in the definition file in order to be
able to regenerate exactly the same container at any time.
regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
>
Kerim, I had mentioned this git repository layout issue in the beginning
of the MoM discussion and also gave detailed directions. If you are
still having trouble at this point, please review those emails.
Thanks and regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
Many thanks for helping with this. At least for pbcore, there is a new release
that hasn't been tagged upstream. Upstream's CI testing passes and I verified
that it's using pysam 0.10.0.
I previously looked at pysam 0.10.0's release notes and didn't see anything
about API changes. Maybe if would
I got a reply privately about this. The answer to the relaxing the
licensing is no--in particulare, they do not care for redistribution and
do not want it.
As for the test mismatch, the difference there is inconsequential.
regards
Afif
على الأحد 22 كانون الثاني 2017 13:35، كتب Afif Elghraoui
Hi, Andreas,
على الثلاثاء 24 كانون الثاني 2017 00:59، كتب Andreas Tille:
> Hi Afif,
>
> On Sat, Jan 07, 2017 at 02:38:32PM -0800, Afif Elghraoui wrote:
>>
>> Ok, so I will plan to move things out of med-bio into the more specific ones
>> in the next few days.
>
ntian
override is in order. I think the rpath is only needed for the private
library module it builds (libchtslib).
Otherwise, I think I can get to this tomorrow.
Thanks and regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
Hello,
I didn't get any response to this message of mine from last May. There
are two points there: one is the output of the test suite and the other
is the request to consider less restrictive licensing.
Thanks and regards
Afif
على الخميس 5 أيار 2016 15:25، كتب Afif Elghraoui:
> He
على الأحد 22 كانون الثاني 2017 13:22، كتب Andreas Tille:
> Hi,
>
> On Sun, Jan 22, 2017 at 12:34:52PM -0800, Afif Elghraoui wrote:
>>> Is there any public record of this we couly add to the Wiki page?
>>> I could add another mail.
>>
>> No, this was just
على الأحد 22 كانون الثاني 2017 09:13، كتب Andreas Tille:
>> I've tried before with signalp or rnammer and got no response.
> Is there any public record of this we couly add to the Wiki page?
> I could add another mail.
>
No, this was just a direct email to the authors.
re
Hi, Andreas,
على الجمعـة 20 كانون الثاني 2017 00:30، كتب Andreas Tille:
> Hi Afif,
>
> On Thu, Jan 19, 2017 at 09:13:20PM -0800, Afif Elghraoui wrote:
>>
>> See https://github.com/thegenemyers/DALIGNER/issues/35
>
> I've added a comment.
>
Thanks
&
Hi, Andreas,
على الخميس 19 كانون الثاني 2017 05:08، كتب Andreas Tille:
> On Thu, Jan 19, 2017 at 12:44:31AM -0800, Afif Elghraoui wrote:
[...]
>>
>> I'm fine with the idea, but it's not something I would do. This seems to
>> me like something that is better implem
على الخميس 19 كانون الثاني 2017 05:14، كتب Andreas Tille:
> On Wed, Jan 18, 2017 at 11:59:36PM -0800, Afif Elghraoui wrote:
>>>
>>>> daligner/dazzdb/dascrubber probably have new upstream snapshots that need
>>>> to
>>>> be packaged.
>>>
Hi, Andreas,
على الأربعاء 18 كانون الثاني 2017 05:33، كتب Andreas Tille:
> Hi again,
>
> On Wed, Jan 18, 2017 at 11:34:44AM +0100, Andreas Tille wrote:
>> Hi Afif,
>>
>> On Wed, Jan 18, 2017 at 01:33:55AM -0800, Afif Elghraoui wrote:
>>>
>>> falcon&
Hi, Andreas,
On الأربعاء 18 كانون الثاني 2017 02:34, Andreas Tille wrote:
Hi Afif,
On Wed, Jan 18, 2017 at 01:33:55AM -0800, Afif Elghraoui wrote:
I guess it should be not to hard to fix the clean target but I'm
wondering whether you might intend to continue on this.
This new version,
3=&packages=&ignpackages=&format=html
regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
e (and thank you and Andreas for working on it). I mostly wanted to
fix the issue with the package version and make sure some other
touch-ups made it into the upload.
Thanks and regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
على السبت 14 كانون الثاني 2017 21:42، كتب Sascha Steinbiss:
> OK, thanks for the confirmation. I’ll update to the latest version of
> pbcommand then.
Many thanks for updating pbcommand--but don't forget to push the final
changes and tag. :)
regards
Afif
--
Afif Elghraoui | ع
s of the
different PacBio tools together. If it breaks anything, then that just
points out something else that should be updated.
Thanks and regards
Afif
>
> [1] https://github.com/PacificBiosciences/pbcommand/issues/116
> [2]
> https://github.com/PacificBiosciences/pbcommand/commits
On السبت 7 كانون الثاني 2017 03:48, Andreas Tille wrote:
Hi Afif,
On Sat, Jan 07, 2017 at 12:51:26AM -0800, Afif Elghraoui wrote:
Metapackages are an exception here anyway. While we should not try to
move too much around the Blends metapackages are re-uploaded short
before the final
على السبت 7 كانون الثاني 2017 00:45، كتب Afif Elghraoui:
> The
> problem here is making the leap to actually releasing a bio-ngs
> metapackage (which is too late now anyway).
Maybe it's not too late [1]. I think new binary packages are still
allowed into testing--just not new s
ow would we do that?
Thanks and regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
For whoever's interested:
على الأحد 25 كانون الأول 2016 15:51، كتب Afif Elghraoui:
>> IMHO we should consider two things:
>>
>> 1. File bug to not mess up comments
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=849500
>
>> 2. File wishlist bug "
On الإثنين 26 كانون الأول 2016 06:50, Ghislain Vaillant wrote:
On 25/12/16 23:51, Afif Elghraoui wrote:
I think it's enough consistency that people are either using dh_make,
debmake, or the debian-med packaging template and just adding to that.
If people were writing these packaging
Hello,
على السبت 24 كانون الأول 2016 22:51، كتب Andreas Tille:
> Hi,
>
> On Sat, Dec 24, 2016 at 10:00:07PM -0800, Afif Elghraoui wrote:
>>> On 24/12/16 15:41, Afif Elghraoui wrote:
>>>> I'm admittedly no fan of cme's styling. While I have my own styl
Hi, Ghislain,
على السبت 24 كانون الأول 2016 08:12، كتب Ghislain Vaillant:
> On 24/12/16 15:41, Afif Elghraoui wrote:
>> Hi, all,
>>
>> I'm admittedly no fan of cme's styling. While I have my own style that I
>> prefer to use in d/control, I don't i
on to apply cme systematically to packages as part of any
upload? Besides my dislike for what it does to the file, it has in one
case moved a Depends line away from the comment that describes it (so
the comment ends up being next to something else).
Thanks and regards
Afif
--
Afif Elghraoui | عف
created with empty package. I dont want to change the way this package
> builded. Didn't find any useful example for python split packaging. Any
> ideas?
I just made this change and will upload poretools with a data package
shortly.
regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
Whoa, wait a minute. Consensuscore2 hasn't been deprecated yet--it's just been
bundled with other things in the unanimity suite.
The reason I don't support removal of this source package is that we might find
the best solution to be extracting consensuscore2 from unanimity and using that
for the
of the License, or (at your option) any later
> version...".
>
>
Ah, you're right. I thought I did this particular check yesterday and so
made the comment from memrory, but I must have been looking at another
package or something.
Thanks and regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
you clarify this in README.source or use a
more intuitive name?
the build is taking a bit too long on the computer I'm using now, so I
would have to try on a more resourceful machine to fully test it out.
Thanks and regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
ners!) or whether its a hard one.
I think the "newcomer" BTS tag would be appropriate for the easy ones,
so I wanted to advertise the use of that. :)
Many thanks and regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
ches the situation here.
Thanks and regards
Afif
1. https://www.debian.org/doc/debian-policy/ch-source.html#s-embeddedfiles
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
mported the source
before, it looks like you manually copied the tarball contents over the
existing source. You should do it using the instructions in the Debian
Med policy:
http://debian-med.alioth.debian.org/docs/policy.html#updating-git-package
Thanks and regards
Afif
--
Afif Elgh
>
> 2016-11-26 9:20 GMT+02:00 Afif Elghraoui <mailto:a...@debian.org>>:
>
> Hi, Kerim,
>
> Any update? This part should be really quick.
>
> Thanks and regards
> Afif
>
> على السبت 19 تشرين الثاني 2016 20:40، كتب Afif Elghraoui:
>
Hi, Kerim,
Any update? This part should be really quick.
Thanks and regards
Afif
على السبت 19 تشرين الثاني 2016 20:40، كتب Afif Elghraoui:
>
>
> على السبت 19 تشرين الثاني 2016 05:07، كتب Kerim Ölçer:
>> i'm unterstand, shall i do make itp again
>
> Don't
regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
ther those files are useful for you. If
they are, we can arrange to get them packaged and you can pull it in as
a dependency.
regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
ovides a modern user interface that will rapidly
> adjust to your daily workflow.
>
Looks good.
regards
Afif
1.
https://www.debian.org/doc/manuals/developers-reference/ch05.en.html#newpackage
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
على الإثنين 14 تشرين الثاني 2016 23:13، كتب Kerim Ölçer:
> Hi Afif,
>
> I made itp. Now i am waiting. Sould i make something else?
>
Ah, yes. It is at
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=843022
I will reply to the email it generated.
regards
Afif
--
Afif Elgh
Hi, Kerim,
Is there any news on this packaging? Let me know if you are stuck on
anything.
regards
Afif
على الثلاثاء 1 تشرين الثاني 2016 23:55، كتب Afif Elghraoui:
> Hi, Kerim,
>
> على الثلاثاء 1 تشرين الثاني 2016 11:56، كتب Kerim Ölçer:
>>
>> I made an ITP give lists m
y.
It looks like that repository belongs to a DD, but it's a couple years
old. She's listed as a Debian Med member according to
<https://wiki.debian.org/DebianMed/Developers>, but I have never heard
of her working in our team, so it was surely before my time.
Thanks and reg
على الأربعاء 2 تشرين الثاني 2016 00:45، كتب Ghislain Vaillant:
> On 02/11/16 07:18, Afif Elghraoui wrote:
>> Varmatch is a pretty new software package and they haven't yet made
>> their first official release. I saw the preprint article, thought it was
>> interesti
his start in packaging it as a result.
Being unreleased yet, the major concern is for it to produce accurate
results, so you should make sure that it can reproduce the results they
claim that it can with their test data.
Thanks and regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
annot automatically send
the report. You can instead have it print out the text to paste into an
email and send it to sub...@bugs.debian.org.
Thanks and regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
lked about first filing the intent to package (ITP) ticket in the
Debian BTS and then pointed you to git-buildpackage, which is the
primary tool we're using to manage the git packaging (and handles things
like importing new releases into the packaging repository).
Thanks and regards
Af
ly way to connect to the
server. Take a look at <https://wiki.debian.org/Alioth/SSH> if you
haven't already.
regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
p import-orig --pristine-tar` command from
git-buildpackage.
If you already did this, go ahead and push to alioth. Make sure to push
all branches and tags.
regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
ceed
with uploading.
Thanks and regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
s there anything
specific that confused you (I'm not sure what you mean by a copyright
license)
regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
Hello,
على الخميس 13 تشرين الأول 2016 00:15، كتب Andreas Tille:
> Hi,
>
> On Wed, Oct 12, 2016 at 11:39:44PM -0700, Afif Elghraoui wrote:
>>
>> Thanks for pointing this out, Andreas. I went ahead and did this
>> conversion. Even if Kerim is comfortable with
log progress of the packaging, even if it does
not get completed anytime soon.
Once that is up, I can look for old discussion threads regarding
Andreas' previous packaging effort and post them to the log for reference.
regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
m willing to step in and do a mentorship. This way, two people can
start at the same time.
Thanks and regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
#x27;t mind - to let them know that you might be interested next
> term (or next year - or at least somewhen :)).
Great!
>
> BTW, I was not precise in my previous letter - they are non-profit
> organization and they don't charge any fees from students or mentors -
> except
على السبت 10 أيلول 2016 14:23، كتب Afif Elghraoui:
> It is a very nice idea and I
> hope we could take advantage of it.
Too many vague pronouns-- The program looks like a very nice idea and I
hope that Debian Med could take advantage of it sometime.
apologies for the ambiguity
Afif
--
m, but not sure if they'll decide to mention it. Some of my
> friends know about it and they are interested in bioinformatics-related
> projects. Andreas, I hope you are reading and will use this knowledge
> for a great good :)
> P.-P. S. - I just thought that it might help some of you to accelerate
> your work or research. That's why I finally decided to write this.
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
be great.
>
Also uploaded, though I couldn't help you with the reproducibility
issue. Maybe it can be resolved for the next upload.
Thanks and regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
على السبت 13 آب 2016 15:18، كتب Dylan:
> Hi Afif,
>
> Le 13 août 2016 7:08 AM, "Afif Elghraoui" a écrit :
>>
>> Your d/watch file is not working properly with uscan. Is there a
>> particular reason that you have it pointing to the downloads page rather
hanks and regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
Hello and apologies for the delay
[adding Tim to Cc since he was addressed in Steffen's last message]
على الأحد 31 تـمـوز 2016 15:07، كتب Steffen Möller:
>
>
> On 30/07/16 10:15, Afif Elghraoui wrote:
>> Hi, all,
>>
>> على الخميس 28 تـمـوز 2016 03:54، كتب Sasc
While we can't have official packages that
follow such relaxed requirements, we might keep up in this regard with
some unofficial ([semi-]auto-generated? [1]) packages, but I think our
main problem is lack of support for unprivileged installation.
regards
Afif
1. https://wiki.debian.org/AutomaticPackagingTools
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
'm not really sure about this. New binaries in source-only uploads are
somehow detected because they get automatically rejected for this reason
specifically.
regards
Afif
--
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
am
> doesn't provide test data.
>
The problem of duplication and shared corner cases to test (for programs
that serve similar purposes) is also a very worthy reason.
Thanks and regards
Afif
1. https://github.com/PacificBiosciences/PacBioTestData
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Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name
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