send over a
> AMPQ message queue, RabbitMQ, to then potentially be used in a MySQL/SQL
> database. As of now, the database part is not clear, but it would most
> likely a registery that needs to be updated via use of Java JPA libary/SQL
> queries.
>
>
> https://github.com/chessman179/gmailtestinged
> <<<<<<<<<<<<< code.
>
>
> ** big shout out to Marcus --
>
>
> --
Shameera Rathnayaka
n me in welcoming Ajinkya to Airavata.
>> >
>> > Suresh
>> > (On Behalf of Apache Airavata PMC)
>>
>>
>
>
> --
> Thank You,
> Best Regards,
> Eroma
>
--
Shameera Rathnayaka
productivity.
>> >
>> > Please join me in welcoming Anuj to Airavata.
>> >
>> > Suresh
>> > (On Behalf of Apache Airavata PMC)
>>
>>
>
>
> --
> Thank You,
> Best Regards,
> Eroma
>
>
> --
Shameera Rathnayaka
This should enable
> better productivity.
> >
> > Please join me in welcoming Gourav to Airavata.
> >
> > Suresh
> > (On Behalf of Apache Airavata PMC)
>
>
>
>
>
> --
>
> Thank You,
>
> Best Regards,
>
> Eroma
>
--
Shameera Rathnayaka
Hi Suresh,
What is the status of the release?
Thanks,
Shameera.
On Mon, Apr 3, 2017 at 1:22 PM Suresh Marru wrote:
> Hi All,
>
> I merged PGA and Airavata develop with master. Will work on release now.
>
> Suresh
>
> On Apr 3, 2017, at 11:23 AM, Shameera Rathnayaka
&
Btw, I thought we agreed to merge bug fixes to both master and develop
branch same time.
On Sun, Apr 23, 2017 at 6:28 PM Shameera Rathnayaka
wrote:
> Hi Marcus,
>
> We shouldn't deviate master from develop branch , +1 for merging master to
> dev.
>
> thanks,
> Shameer
' and I would like to merge those to the develop branch. I
> think the plan was to merge these back to develop once we make the release
> but I would also like to do a merge now. Any objections?
>
> Thanks,
>
> Marcus
>
--
Shameera Rathnayaka
ion: what is the role of the
> release branch? Is it to be a long lived branch post release for bug fixes
> for that release, or is it a temporary branch for bug fixes for this
> release?
>
> Thanks,
>
> Marcus
>
> On Apr 3, 2017, at 10:56 AM, Shameera Rathnayaka
> wrot
ment will get disturbed if we start this process from
Monday?
>
> Suresh
--
Shameera Rathnayaka
emove all of the RabbitMQ implementation and replace it
> with the gossip protocol via Serf.
>
> Thanks,
> Apoorv Palkar
>
--
Shameera Rathnayaka
ted
by others)
---
Cheers,
-
Eric Coulterjecou...@iu.edu
XSEDE Capabilities and Resource Integration Engineer
IU Campus Bridging & Research Infrastructure
RT/PTI/UITS
812-856-3250 <(812)%20856-3250>
--
Shameera Rathnayaka
this.
How would you think through this idea? Do you think this has some potential?
On Mon, Jan 16, 2017 at 6:55 AM, Shameera Rathnayaka wrote:
Hi Ajinkya,
As and when job gets completed we save output for the same. I was
wondering, if we can get that information knowing process_id and task_id
for other
> application. I hope, I understood your concern correctly.
>
> On Sun, Jan 15, 2017 at 11:59 PM, Shameera Rathnayaka <
> shameerai...@gmail.com> wrote:
>
> This approach sounds promising to me, if we have more than one non-file
> outputs then we will have more t
s and log output as well.
> But, in OutputLogginTask we need not to stage any data, we would just log
> data as it come.
>
> I am assuming TaskId and ProcessId is sufficient to fetch output. (please
> correct me if you don't think so)
>
> Thanks Shameera, this di
n case you think of any better solution.
>
> Thanks in anticipation.
>
>
> On Sat, Jan 14, 2017 at 9:46 PM, Shameera Rathnayaka <
> shameerai...@gmail.com> wrote:
>
> Hi Ajinkya,
>
> Yes, that is the case. how would you plan to solve it?
>
> Regards,
> S
gging output
> against process.(Please correct me if I am wrong).
>
> Probably, here we have an opportunity to improve.
>
> Thanks in anticipation
>
> On Fri, Jan 13, 2017 at 8:58 AM, Shameera Rathnayaka <
> shameerai...@gmail.com> wrote:
>
>> Hi Ajinkya,
&g
.com/apache/airavata/tree/develop/dev-tools/ansible
[2] https://github.com/apache/airavata/pull/67
Regards,
Shameera.
Cheers,
> Eric C.
>
--
Shameera Rathnayaka
ally, we are
> not updating process model after job completion, we update job model
> though.
>
> Am I missing anything here?
>
> Any help is appreciated.
>
> --
> Thanks and regards,
>
> Ajinkya Dhamnaskar
> Student ID : 0003469679
> Masters (CS)
> +1 (812) 369- 5416 <(812)%20369-5416>
>
>
> --
Shameera Rathnayaka
t; Eroma has been a committer and long time contributor to Airavata. Being a
> PMC member enables assistance with the management and to guide the
> direction of the project.
>
> Please join me in welcoming Eroma to Airavata PMC
>
> Suresh
> (On Behalf of Apache Airavata PMC)
>
>
> --
Shameera Rathnayaka
s,
>
> Ajinkya Dhamnaskar
> Student ID : 0003469679
> Masters (CS)
> +1 (812) 369- 5416 <(812)%20369-5416>
>
--
Shameera Rathnayaka
+1
On Sat, Oct 15, 2016 at 3:39 PM Pierce, Marlon wrote:
> How about directing the Jenkins messages to the “issues” or another list
> besides dev@airavata?
>
>
>
> Marlon
>
>
>
--
Shameera Rathnayaka
these issues discussed here. If you can describe that plan to others also,
> we may be able to come to a good conclusion.
>
> Thanks,
> Supun..
>
> On Fri, Oct 7, 2016 at 5:07 PM, Shameera Rathnayaka <
> shameerai...@gmail.com> wrote:
>
> It seems I might have missed so
It seems I might have missed some important parts in Airavata Architecture.
I think it is time for me to step back and re-evaluate again why I see
these big whole in our design. Thanks Amila for following this thread so
far.
Thanks,
Shameera.
On Fri, Oct 7, 2016 at 12:50 PM Shameera Rathnayaka
equest, it
can be same thread or different thread from thread pool.
> Also, others let me know whether I read the statement incorrectly.
>
> -AJ
>
> On Fri, Oct 7, 2016 at 11:46 AM, Shameera Rathnayaka <
> shameerai...@gmail.com> wrote:
>
> glad you got that, also d
ch and Kafka cluster and we were able to visualize the logs in
> kibana.
>
> Please provide your valuable feedback on this feature.
>
> [1]https://issues.apache.org/jira/browse/AIRAVATA-2065
> [2]
> https://github.com/apache/airavata/commit/8eea17fb9c8c073784795dfc56618ec556a12ad1
> [3]
> https://cwiki.apache.org/confluence/display/AIRAVATA/Tutorial+09+-+How+to+setup+centralized+logging+for+Airavata
>
>
> Regards
> Lahiru
>
>
>
> --
> Shameera Rathnayaka
>
> --
> Shameera Rathnayaka
>
> --
Shameera Rathnayaka
more easier.
>
>
> [1]https://issues.apache.org/jira/browse/AIRAVATA-2145
>
> On Fri, Oct 7, 2016 at 7:05 AM, Lahiru Ginnaliya Gamathige <
> glah...@gmail.com> wrote:
>
>
>
> On Thu, Oct 6, 2016 at 6:33 AM, Shameera Rathnayaka <
> shameerai...@gmail.com
gram, it seems the thread that submits the job is not the
> same as the thread that handles output.
> At least that is what I understand.
>
> -AJ
>
> On Thu, Oct 6, 2016 at 4:26 PM, Shameera Rathnayaka <
> shameerai...@gmail.com> wrote:
>
> Previous attachment doesn&#
sh
>
>
> On Oct 6, 2016, at 3:52 PM, Amila Jayasekara
> wrote:
>
> On Thu, Oct 6, 2016 at 3:17 PM, Shameera Rathnayaka <
> shameerai...@gmail.com> wrote:
>
>
>
> On Thu, Oct 6, 2016 at 2:50 PM Amila Jayasekara
> wrote:
>
> On Thu, Oct 6, 2016 at
[1]https://issues.apache.org/jira/browse/AIRAVATA-2065
> [2]
> https://github.com/apache/airavata/commit/8eea17fb9c8c073784795dfc56618ec556a12ad1
> [3]
> https://cwiki.apache.org/confluence/display/AIRAVATA/Tutorial+09+-+How+to+setup+centralized+logging+for+Airavata
>
>
> Regards
> Lahiru
>
>
>
> --
Shameera Rathnayaka
On Tue, Oct 4, 2016 at 2:28 PM Lahiru Ginnaliya Gamathige
wrote:
> On Tue, Oct 4, 2016 at 11:07 AM, Shameera Rathnayaka <
> shameerai...@gmail.com> wrote:
>
> Hi Lahiru,
>
> I didn't see any architectural mail regarding this hence asking, Can you
> explain you
ualize the logs in
> kibana.
>
> Please provide your valuable feedback on this feature.
>
> [1]https://issues.apache.org/jira/browse/AIRAVATA-2065
> [2]
> https://github.com/apache/airavata/commit/8eea17fb9c8c073784795dfc56618ec556a12ad1
> [3]
> https://cwiki.apache.org/confluence/display/AIRAVATA/Tutorial+09+-+How+to+setup+centralized+logging+for+Airavata
>
>
> Regards
> Lahiru
>
>
>
> --
Shameera Rathnayaka
erged, you can
> safely delete these new branches.
> $ git push origin :task-A
> $ git push origin :task-B
>
>
>
> Again there might be other effective ways to do this, but this worked well
> for me and helped me understand better how we can create new PRs without
> adding everything to one. Hope this helps!
>
>
>
> *Note: Also while pushing commits, it is recommended to add the JIRA issue
> number to the commit so that Git automatically links the JIRA issue with
> the commit/merge.*
>
>
>
> Thanks and Regards,
>
> Gourav Shenoy
>
--
Shameera Rathnayaka
to this.
>
> Thanks in anticipation
> --
> Thanks and regards,
>
> Ajinkya Dhamnaskar
> Student ID : 0003469679
> Masters (CS)
> +1 (812) 369- 5416
>
--
Shameera Rathnayaka
\n'
if (preJobCommands != null) for(pjc in preJobCommands) out.print pjc +'\n'
if (jobSubmitterCommand != null) out.print jobSubmitterCommand + ' '
if (executablePath != null) out.print executablePath + ' '
if (inputs != null) for(input in inputs) out.print input + ' '
out.print '\n'
if (postJobCommands != null) for(pjc in postJobCommands) out.print pjc +'\n'
%>
Thanks,
Shameera.
--
Shameera Rathnayaka
Hi Devs,
I moved my local airavata ansible script from
https://github.com/shamrath/airavata-ansible which already under Apache 2.0
License header, to Airavata repository, Lets maintain the script here.
Thanks,
Shameera.
On Thu, Sep 1, 2016 at 7:24 PM Shameera Rathnayaka
wrote:
> Hi Am
Hi Devs,
As there were no any objections, I imported my local mesos ansible script
from https://github.com/shamrath/mesos-deployment which already under
Apache 2.0 License, to Apache Airavata preserving all history.
Thanks,
Shameera.
On Wed, Sep 21, 2016 at 7:13 PM Shameera Rathnayaka
wrote
exit-code) since Fri
> 2016-09-16 19:46:37 UTC; 18s ago
>
> Process: 12608 ExecStart=/usr/bin/mesos-init-wrapper master *(code=exited,
> status=1/FAILURE)*
>
> Main PID: 12608 (code=exited, status=1/FAILURE)
>
>
>
> Sep 16 19:46:37 ip-172-30-1-39 systemd[1]: *
you used (centos_ami_7_2: ami-6d1c2007).
>
>
>
> Thanks and Regards,
>
> Gourav Shenoy
>
>
>
> *From: *Shameera Rathnayaka
> *Reply-To: *"dev@airavata.apache.org"
> *Date: *Thursday, September 15, 2016 at 8:26 PM
> *To: *"dev@airavata.ap
-1.3.0-1.0.506.el7.x86_641/1 \nerror:
> unpacking of archive failed on file /usr/bin/marathon;57da: cpio:
> read\n Verifying :
> marathon-1.3.0-1.0.506.el7.x86_641/1
> \n\nFailed:\n marathon.x86_64
> 0:1.3.0-1.0.506.el7
> \n\n
came up
with Ansible script to spin up Mesos cluster on the target set of nodes.
You can find the script here https://github.com/shamrath/mesos-deployment I
am thinking of move this code to Airavata if all agreed. I would happy to
answer any question related to this.
Thanks,
Shameera.
--
Shameera
anks,
>
> -Colin
>
>
>
> *From:* Shameera Rathnayaka [mailto:shameerai...@gmail.com]
> *Sent:* Saturday, September 3, 2016 11:37 PM
> *To:* dev@airavata.apache.org
>
>
> *Subject:* Re: FW: Docker with Airavata
>
>
>
> Hi Colin,
>
>
>
> You
required scripts attached. Please
> > let me know if you find trouble accessing these files and the link.
> >
> > Thanks
> > Pankaj
> >
> > On Fri, Aug 19, 2016 at 10:23 PM, Lahiru Ginnaliya Gamathige <
> > glah...@gmail.com> wrote:
> >
> > > Hi Devs,
> > >
> > > I remember a Gsoc student did some docker work, I am curious where
> > > did it ended, I see that no Dockerfile is in the repo.
> > >
> > > Do we have those separate ? Please give me some insight on that
> > > project, I would like to look in to it.
> > >
> > > Regards
> > > Lahiru
> > >
>
>
>
--
Shameera Rathnayaka
wrote:
> Nice !
>
> Shouldn't this be part of the distribution ?
>
> Thanks
> -AJ
>
> On Thu, Sep 1, 2016 at 1:25 PM, Shameera Rathnayaka <
> shameerai...@gmail.com> wrote:
>
>> Hi All,
>>
>> I wrote ansible scripts to deploy Apache Airavata
WSO2 IS
Thanks,
Shameera.
--
Shameera Rathnayaka
ster/modules/gfac/gfac-impl/src/main/java/org/apache/airavata/gfac/impl/task
>
> Walking through one concrete implementations like Local submissions or SSH
> or BES will get you an understanding on how to do a similar one for Aurora
> and Marathon.
>
> Suresh
>
>
> --
> Regards,
> Gourav Rattihalli
>
> --
Shameera Rathnayaka
; other frameworks)? Any pointers on other design ideas/patterns that I
> should explore would be greatly appreciated.
>
> --
> Thanks & Regards,
> Abhishek Jain
>
> *Graduate Student*
> *Department of Computer Science*
> *Thomas J. Watson School of Engineering & Applied Science*
> *Binghamton University - State University of New York (SUNY)*
>
>
>
> --
Shameera Rathnayaka
m devop_tools.
>
> Thanks,
> Sudhakar.
>
> On Aug 4, 2016, at 10:58 AM, Shameera Rathnayaka
> wrote:
>
> Hi Amila,
>
> Thanks for your feedback, agree with your 1 and 2 thoughts, let's remove
> those two components.
>
> What I mean by dev-tools is Ansible
es with
> dev-tools should go to (report) the relevant project. Also, if the issue is
> related to configurations, it should go to the respective component. e.g.,-
> distribution.
>
> Thanks
> -Thejaka
>
>
> On Mon, Jul 25, 2016 at 5:21 PM, Shameera Rathnayaka
> wrote:
&
Hi Devs,
Airavata 0.16 is hot off the press, and now latest code refers as
0.17-SNAPSHOT. Let's do some refactoring to the JIRA component list. Some
of them are outdated and some components are not in the list. Let's decide
what is the best component list to be available in JIRA.
Here is my init
resources. Apache Airavata builds on general concepts of service
oriented computing, distributed messaging, and workflow composition and
orchestration.
For general information on Apache Airavata, please visit the project
website: http://airavata.apache.org/
Shameera Rathnayaka
[On Behalf of Airavata PMC]
gt;> On Thu, Jul 14, 2016 at 1:04 PM, Suresh Marru wrote:
>>
>>> + 1 for the release. Commentary on the DISCUSS thread.
>>>
>>> Suresh
>>>
>>> On Jul 13, 2016, at 4:18 PM, Shameera Rathnayaka
>>> wrote:
>>>
>>> Apa
se.zip'
> gpg: Signature made Wed Jul 13 15:12:36 2016 EDT using RSA key ID 3DBF6C86
> gpg: requesting key 3DBF6C86 from hkps server hkps.pool.sks-keyservers.net
> gpg: key 3DBF6C86: public key "Shameera Rathnayaka (Personal Email
> Address) " imported
> gpg: 3 marginal(
Here is my +1
On Wed, Jul 13, 2016 at 4:18 PM Shameera Rathnayaka
wrote:
> Apache Airavata PMC is pleased to call for a vote on the following Apache
> Airavata 0.16 release candidate artifacts:
>
> Detailed change log/release
> notes:https://github.com/apache/airavata/blo
).
* Verify the distribution for the required LICENSE and NOTICE files
* Verify if all the staged files are signed and the signature is verifiable.
* Verify if the signing key in the project's KEYS file is hosted on a
public server
Thanks for your time in validating the release and voting,
Sha
Apache Airavata PMC is pleased to call for a vote on the following
Apache Airavata 0.16 release candidate artifacts:
Detailed change log/release
notes:https://github.com/apache/airavata/blob/airavata-0.16/RELEASE_NOTES
All Release Artifacts:https://dist.apache.org/repos/dist/dev/airavata/0.16/RC1
Hi Devs,
To make airavata friendly with the large scale deployment and share the
same configuration files. I came across with new scripts to start and stop
airavata server components.
Please use following instructions to start and stop the Airavata servers.
Start Script Name: *airavata-server-st
is hard to maintain and not user friendly.
>>
>> This approach desn't add unnecessary overhead to server startup and
>> runtime as Java doesn't load all jars in class path instead it load all the
>> necessary jars at rutime. I would like to know others opinion
erver startup and runtime
as Java doesn't load all jars in class path instead it load all the
necessary jars at rutime. I would like to know others opinion about this
and happy to get feedbacks.
Thanks,
Shameera.
--
Shameera Rathnayaka
loud/test/CloudIntfTest.java
>>>>
>>>> Also, if you want to test run the code, you may please follow this
>>>> quick README:-
>>>>
>>>>
>>>> https://github.com/apache/airavata/blob/develop/modules/cloud/cloud-provisioning/README
>>>>
>>>> Please let me know if you need some more info or code walkthrough.
>>>> Sending you the jetstream openrc credentials separately.
>>>>
>>>> Thanks.
>>>>
>>>> Regards,
>>>> Mangirish
>>>>
>>>> On Wed, Apr 20, 2016 at 11:42 AM, Suresh Marru
>>>> wrote:
>>>>
>>>>> Hi Pankaj,
>>>>>
>>>>> Please switch to ‘develop’ branch and look for the cloud provisioning
>>>>> module -
>>>>> https://github.com/apache/airavata/tree/develop/modules/cloud/cloud-provisioning
>>>>>
>>>>> Suresh
>>>>>
>>>>> On Apr 20, 2016, at 11:37 AM, Pankaj Saha
>>>>> wrote:
>>>>>
>>>>> Hello Mangirish,
>>>>> I have latest Airavata mater branch installed in my local system. Can
>>>>> you please give us some clue how to start creating the VMs through you
>>>>> application. Please specify where we can find your corresponding java
>>>>> code.
>>>>> Is it through PGA website?
>>>>> Please share the required password to me in a separate email.
>>>>>
>>>>> Thanks
>>>>> Pankaj
>>>>>
>>>>>
>>>>>
>>>>
>>>
>>>
>>
>>
> --
Shameera Rathnayaka
Apr 6, 2016, at 12:35 PM, Suresh Marru wrote:
>>>
>>> Hi Nipurn,
>>>
>>> This is an excellent thought. I really like the concept and the thought
>>> process you are walking through the logo design.
>>>
>>> If it helps with reviews I checked a coy of the site here -
>>> http://gw120.iu.xsede.org/airavata-new-site/content/
>>>
>>> Suresh
>>>
>>> On Apr 6, 2016, at 12:14 PM, Nipurn Doshi wrote:
>>>
>>> Hi All,
>>>
>>> New website is in the works and pure html based content has been added
>>> to the repo - https://git-wip-us.apache.org/repos/asf/airavata-site.git
>>> .
>>> Git mirror - https://github.com/apache/airavata-site
>>> There are no special requirements to run the current website redesign
>>> iterations as they are based out of pure html/css/js. All you have to do is
>>> run *index.html* inside the '*content' *folder after checking it out.
>>>
>>> You will find some links not working and titles having Lorem-ipsum text
>>> under them which we aim to fill up with relevant content in the coming
>>> days. Suggestions/comments are most welcome.
>>>
>>> Also, feel free to check draft document for the new proposed Apache
>>> Airavata logo which can also be seen on website iterations, here -
>>> http://bit.ly/airavata-logo-draft
>>>
>>> --
>>> -Sincerely,
>>> Nipurn Doshi
>>>
>>>
>>>
>>>
>>
>
>
> --
> Thank you
> Supun Nakandala
> Dept. Computer Science and Engineering
> University of Moratuwa
>
--
Shameera Rathnayaka
one. The way I have implemented the
> consumers is, the queue messages will be delivered asynchronously, so we
> don’t have to poll for it. So all the processing part will have to be wired
> with call-back function.
>
> · Setup PGA and its dependencies on local for testing
>
> · Understand in which part of the life-cycle the consumer(or
> equivalent of that) threads are to be invocated and what specific shutdown
> interrupts are they to follow and respond to
>
> · Understand properties files conventions
>
> Hence the aforementioned list with the TO-DO list will be part of
> milestone 1.
>
>
>
> Best regards,
>
> Siddharth Jain
>
--
Shameera Rathnayaka
it?
>
> Suresh
--
Shameera Rathnayaka
rgetted for Jetstream). Also, I am planning to explore the option of
>>> using Openstack Heat engine to orchestrate the cluster. However, going
>>> ahead Airavata would be supporting other clouds like Amazon EC2 or Comet
>>> cluster, so we need to have a generic solution for achieving the goal.
>>>
>>> Another approach which might be efficient in terms of performance and
>>> time is using a container based clouds using Docker, Kubernetes which would
>>> have substantially less bootstrap time compared to cloud VMs. This would be
>>> a future prospect as we may not have all the clusters supporting
>>> containerization.
>>>
>>> This has been considered as a potential GSOC project and I would be
>>> working on drafting a proposal on this idea.
>>>
>>> Any inputs/ comments/ suggestions would be very helpful.
>>>
>>> Best Regards,
>>> Mangirish Wagle
>>>
>>
>>
> --
Shameera Rathnayaka
information
>> will include resource usage, resource available for further jobs, job
>> status, time elapsed since the job started, etc. Airavata, in turn, will
>> use this information to determine the resource usage, performance of the
>> jobs on a job submission, rapid diagnosis on the health of the submitted
>> jobs.
>>
>> We will use the observer pattern to continuously pull information from
>> Cloud and big Data Resource Managers, such as Apache Mesos, to Airavata.
>>
>> Any comment and suggestions would be very helpful.
>>
>> Thanks
>> Pankaj
>>
>>
> --
Shameera Rathnayaka
ood luck with your GSoC 2016,
Thanks,
Shameera (on behalf of Airavata PMC).
--
Shameera Rathnayaka
>
>> Thanks
>> Jatin
>>
>>
>> ---- Forwarded Message
>> Subject: Re: Re: Re: Re: Re: Re:
>> Date: Wed, 16 Mar 2016 13:36:07 +
>> From: Shameera Rathnayaka
>>
>> Reply-To: dev@airavata.apache.org
>> To: dev@airav
ated all databases as from documentation and created users with
> granted user permissions. Can someone look once more in my modified
> airavata-server.properties file (attached with mail).
>
> Thanks
> Jatin
>
>
> Forwarded Message ----
> Subject: Re: Re: Re:
a problem of mysql.jar file. Can some send me file or
> its link.
>
> Jatin
>
>
> Forwarded Message
> Subject: Re: Re: Re: Re: Re:
> Date: Tue, 15 Mar 2016 16:38:35 +
> From: Shameera Rathnayaka
>
> Reply-To: dev@airavata.apache.org
> T
/localhost:5672.
> Thanks Jatin
> Forwarded Message
> Subject: Re: Re: Re: Re:
> Date: Mon, 14 Mar 2016 19:31:59 +
> From: Shameera Rathnayaka
>
> Reply-To: dev@airavata.apache.org
> To: dev@airavata.apache.org
>
>
> Yes seems rabbitmq issue has
> Date: Mon, 14 Mar 2016 18:53:14 +0000
> From: Shameera Rathnayaka
>
> Reply-To: dev@airavata.apache.org
> To: dev@airavata.apache.org
>
> Hi Jatin,
>
> I had a quick look at your rabbitmq configs, in your
> airavata-server.properties file you have two entr
airavata
> rabbitmqctl add_vhost messaging
> rabbitmqctl set_permissions -p messaging airavata ".*" ".*" ".*"
> rabbitmqctl set_user_tags airavata administrator
>
> Thanks,
> Chathuri
>
>
>
> On Mon, Mar 14, 2016 at 2:07 PM, Jatin Balodhi
> wrote:
>
>>
t;
> Forwarded Message
> Subject: Re: Re:
> Date: Mon, 14 Mar 2016 17:23:24 +
> From: Shameera Rathnayaka
>
> Reply-To: dev@airavata.apache.org
> To: dev@airavata.apache.org
>
>
> try with "./airavata-server.sh" and see.
>
> On Mon, Mar 14, 2016
> Date: Mon, 14 Mar 2016 16:36:57 +
> From: Shameera Rathnayaka
>
> Reply-To: dev@airavata.apache.org
> To: dev@airavata.apache.org
>
>
> Hi Jatin,
>
> Can we see the startup error/s stack you are getting with airavata. use
> "sh airavata-server.sh" to
check
> its working or not.
>
> Thanks
> jatin
> Forwarded Message
> Subject: Re:
> Date: Mon, 14 Mar 2016 13:15:17 +
> From: Pierce, Marlon
>
> Reply-To: dev@airavata.apache.org
> To: dev@airavata.apache.org
>
>
>
> You shouldn’t need to preface the command with “sh”. Just directly invoke it.
>
>
>
>
> On 3/14/16, 5:12 AM, "Jatin Balodhi"
> wrote:
>
> >Hi
> >
> >I'm getting error while executing airavata-server.sh in terminal.
> >Please help.
> >
> >Jatin
>
>
>
>
>
> <2.png>
>
>
>
>
>
>
>
>
>
>
> --
Shameera Rathnayaka
ac-config.yaml
>
> Is the yaml file in grace-core deprecated?
>
> Marlon
>
>
> --
Shameera Rathnayaka
ks,
>>
>> Eric
>>
>>
>> --
>> Central Veterinary Institute of Wageningen UR (CVI)
>> Department of Infection Biology
>> PO box 65, 8200 AB Lelystad, NL
>> Visiting address: ASG, Edelhertweg 15, 8219 PH Lelystad
>>
>> Tel: +31-(0)320-293391
>> Fax: +31-(0)320-238153
>> E-mail: eric.ku...@wur.nl
>> Web: http://www.cvi.wur.nl
>>
>
> --
Shameera Rathnayaka
> https://repository.apache.org/content/repositories/orgapacheairavata-1006/
> >
> > Please verify the artifacts and vote. The vote will be open for atleast
> 72 hours.
> >
> > [ ] +1 approve
> > [ ] +0 no opinion
> > [ ] -1 disapprove (and reason why)
> >
>
> --
Shameera Rathnayaka
unity.
>
> Suresh
>
> [1] - https://cwiki.apache.org/confluence/display/JCLOUDS/Coding+Standards
> [2] -
> https://cwiki.apache.org/confluence/display/SPARK/Spark+Code+Style+Guide
> [3] - https://google.github.io/styleguide/javaguide.html
>
> On Oct 30, 2015, at 11:40 AM, Sha
https://github.com/twitter/commons/blob/master/src/java/com/twitter/common/styleguide.md
This is good reference to follow.
Thanks,
Shameera.
--
Shameera Rathnayaka
so that I can start working and making changes to java code for the
> same.
>
> Thanks
> Pankaj
>
> --
Shameera Rathnayaka
as well. Unicore client adds 52 jars, I think this
>> is too much for a client to a web service. We should just require a service
>> stub and probably 2 or 3 other. I will not tackle this one now, but
>> something to pay attention.
>>
>> Please test and report any errors with these trimmed dependencies.
>>
>> Suresh
>>
>>
>
> --
Shameera Rathnayaka
is submitted, a call to increment the counter will be made, and
>> when a job is finished a call to decrement the counter will be made
>> - once that is complete, BatchQueueClass needs to periodically check the
>> new table to see if the current job number < queue job limit. If it is then
>> we can just pop jobs off to submit them until we hit the job limit
>>
>> How does this sound?
>>
>> Doug
>
>
> --
Shameera Rathnayaka
Handlers:Error Executing a InFlow Handler
> at
> org.apache.airavata.gfac.core.cpi.BetterGfacImpl.launch(BetterGfacImpl.java:736)
> at
> org.apache.airavata.gfac.core.cpi.BetterGfacImpl.submitJob(BetterGfacImpl.java:485)
> ... 5 more
> Caused by: org.apache.airavata.gfac.GFacException: Error Invoking
> Handlers:Error Executing a InFlow Handler
> at
> org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:903)
> at
> org.apache.airavata.gfac.core.cpi.BetterGfacImpl.launch(BetterGfacImpl.java:679)
> ... 6 more
> Caused by: org.apache.airavata.gfac.GFacException: Error Executing a
> InFlow Handler
> at
> org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:892)
> ... 7 more
> Caused by: org.apache.airavata.gfac.GFacException: Error occurred...
> at
> org.apache.airavata.gfac.ssh.util.GFACSSHUtils.addSecurityContext(GFACSSHUtils.java:184)
> at
> org.apache.airavata.gfac.ssh.handler.SSHDirectorySetupHandler.invoke(SSHDirectorySetupHandler.java:47)
> at
> org.apache.airavata.gfac.core.cpi.BetterGfacImpl.invokeInFlowHandlers(BetterGfacImpl.java:888)
> ... 7 more
> Caused by: org.apache.airavata.gsi.ssh.api.SSHApiException: An exception
> occurred while connecting to server.Connecting server - comet.sdsc.edu:22
> connecting user name - ogce
> at
> org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.reconnect(GSISSHAbstractCluster.java:235)
> at
> org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.(GSISSHAbstractCluster.java:100)
> at
> org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.(GSISSHAbstractCluster.java:94)
> at org.apache.airavata.gsi.ssh.impl.PBSCluster.(PBSCluster.java:44)
> at
> org.apache.airavata.gfac.ssh.util.GFACSSHUtils.addSecurityContext(GFACSSHUtils.java:172)
> ... 9 more
> Caused by: com.jcraft.jsch.JSchException: Auth fail
> at com.jcraft.jsch.Session.connect(Session.java:512)
> at
> org.apache.airavata.gsi.ssh.impl.GSISSHAbstractCluster.reconnect(GSISSHAbstractCluster.java:230)
> ... 13 more
>
> --
> Regards
>
> W.Dimuthu Upeksha
> Undergraduate
> Department of Computer Science And Engineering
>
> University of Moratuwa, Sri Lanka
>
--
Shameera Rathnayaka
at do you think?
>
> Thanks
> Pankaj
>
>
>
> On Thu, Jul 23, 2015 at 11:47 AM, Shameera Rathnayaka <
> shameerai...@gmail.com> wrote:
>
>> Hi Pankaj,
>>
>>
>> On Thu, Jul 23, 2015 at 11:36 AM Pankaj Saha
>> wrote:
>>
>>>
work . e.g.: ENV rabbitmq.broker.url
> On Thu, Jul 23, 2015 at 10:50 AM, Shameera Rathnayaka <
> shameerai...@gmail.com> wrote:
>
>> For this we can use entry point or startup script which set
>> apiserve.server.host= system property. You can read docker-
t;
> please suggest if you have any way out to this problem.
>
> Thanks
> Pankaj
>
>
>
> On Wed, Jul 22, 2015 at 10:44 PM, Shameera Rathnayaka <
> shameerai...@gmail.com> wrote:
>
>> Hi Pankaj,
>>
>> If you pass environment variable then yo
erties before running the airavata server.
>
> Thanks
>
>
> Pankaj
> On 22-Jul-2015 9:34 PM, "Shameera Rathnayaka"
> wrote:
>
>> Hi Pankaj,
>>
>> did you try parsing those values as system properties when you start
>> docker images? It shou
apiserver.server.host=container ip. Container ip will the ip address of the
>>> running container. Which can be fetched by "wk 'NR==1 {print $1}'
>>> /etc/hosts" command. We need to plan how we are going to feed these values
>>> to the properties file without manual changes.
>>>
>>> Thanks
>>> Pankaj
>>>
>>>
>>>
>>
> --
Shameera Rathnayaka
>
> Thanks
> Pankaj
>
>
>
>
>
>
>
> On Wed, Jul 22, 2015 at 12:19 PM, Shameera Rathnayaka <
> shameerai...@gmail.com> wrote:
>
>> Hi Pankaj,
>>
>> There are two types of docker images,
>> 1. Released airavata docker images - Here w
>
> Thanks
> Pankaj
>
>
>
> On Wed, Jul 22, 2015 at 11:21 AM, Shameera Rathnayaka <
> shameerai...@gmail.com> wrote:
>
>> When ever it is possible, we should reduce number of docker command lines
>> as it create a new layer. in that case not only RUNS w
attached (this is also uploaded
> to pankajsaha/dockerfiles git registry)
>
> Thanks
> pankaj
>
> On Wed, Jul 22, 2015 at 10:24 AM, Shameera Rathnayaka <
> shameerai...@gmail.com> wrote:
>
>> Hi Pankaj,
>>
>> I think it always good create minimum layers wi
> https://github.com/pankajsaha/dockerfiles. Dockerfile should be present
> at the root of the airavata-php-gateway source tree structure.
>
> also you can see it here at attachment.
>
> Thanks
> Pankaj
>
>
> --
Shameera Rathnayaka
Hi Marlon,
I contacted infra and resolved the issue. Now i could commit.
Thanks,
Shameera.
On Mon, Jul 20, 2015 at 4:52 PM Pierce, Marlon wrote:
> Any updates on this? Looks like Shameera still can’t push to master.
>
> From: Shameera Rathnayaka
> Reply-To: "dev@ai
rising. Can you hop onto Infra hip chat and seek help -
> https://www.hipchat.com/g7itl962x
>
>
> Suresh
>
> On Sat, Jul 18, 2015 at 3:50 PM Shameera Rathnayaka
> wrote:
>
>> Hi Dev,
>>
>> I need to sync airavata master php client code with pga master, in
Hi Dev,
I need to sync airavata master php client code with pga master, in order to
make pga master works with airavata master.It seems I don't have commit
access to airavata-php-gateway repo. I have the changes in my local repo
and i need to push this changes to remote airavata-php-gateway reposi
d
> WSO2 IS. These are used in the SSL handshakes.
> Production deployment should replace them with organizational keystore and
> trust store.
> I will add this information to documentation as well.
>
> Thanks,
> Hasini.
>
--
Shameera Rathnayaka
of my previous reply.
>
> On Mon, Jul 6, 2015 at 12:03 PM, Shameera Rathnayaka <
> shameerai...@gmail.com> wrote:
>
>> Hi Pankaj,
>>
>> you can use following steps on your Dockerfile to install java. After
>> that java will be available anywhere and you don
ankaj,
You may have confused with docker maven plugin which we are talking above,
that is only for building purpose. you don't need to worry about this. I
have few comments about your docker files let me reply it separately.
Thanks,
Shameera.
On Mon, Jul 6, 2015 at 2:14 PM Shameera Rathnayaka
nclude the source code and only keep the executable
>>>>> binaries then how can we fulfill that goal?
>>>>> do we need two set of docker images 1. with source code (dev edition)
>>>>> and 2. without source code (end user edition) ?
>>>>> p
ments and after
>>>>> multiple
>>>>> reviews we can move ti to the the code base.
>>>>>
>>>>> I propose to create a folder struction like this and put the docker
>>>>> files.
>>>>>
>>>>> aira
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