[ECOLOG-L] Job Announcement: Research Technician in the Harte Lab at UC Berkeley

2011-10-25 Thread Andy Rominger
The Harte lab at the University of California, Berkeley, is seeking a lab technician to contribute to several exciting new projects involving the testing of ecological theory and the development of scientific and conservation-oriented software. The position will be part of a collaborative effort

Re: [ECOLOG-L] Similarity index

2011-06-20 Thread Andy Rominger
Hi Rajasri, Sorry for coming to this late. Is your concern that in the case of small patches you've sampled completely, but in the case of large patches, some species may have gone undetected? If that's the case, using Chao's indices might be a good option. They try to take account of unseen

Re: [ECOLOG-L] ANOSIM vs ANOVA

2011-06-20 Thread Andy Rominger
Hi Alejandro, Here are some thoughts on your question: ANOSIM analyses the similarity (e.g. Bray-Curtis, Jaccard, etc.) between community samples. So it's kind of like a multivariate analysis of variance. In general such a result cannot be obtained using an analysis of variance. So that might

Re: [ECOLOG-L] Question for generating population distributions in R

2010-11-04 Thread Andy Rominger
looking at the documentation, it seems `prestondistr' returns you the coefficients of the distribution, but not a random sample from that distribution. colony size is discrete, yes? so really you want to sample numbers 1, 2, , MAX you could do that with something like: trunc - 20

Re: [ECOLOG-L] a good, free R text editor for mac

2010-09-23 Thread Andy Rominger
Hi Emma, I don't know really. I always use the built-in editor that comes with R.app which I've found useful enough (no split screen but some highlighting plus piping selected code with apple+enter). But as it turns out there's a whole discussion about text editors on the r-sig-eco email list

Re: [ECOLOG-L] Grants for Independent Research

2010-09-08 Thread Andy Rominger
Fulbright is a great option, especially for research abroad. http://us.fulbrightonline.org/home.html The only bummer there is that I think the aplication deadline is coming up real soon. To apply you usually need to have some kind of affiliation in the states--but for those who just graduated

Re: [ECOLOG-L] Making Species Co-Occurrence Matrix

2010-08-27 Thread Andy Rominger
Hi Jane, I think someone may have asked something similar on the r-sig-eco email list (which is a good resource in general: https://stat.ethz.ch/mailman/listinfo/r-sig-ecology) I think the answer may have been there there's a function in the vegan package for R

Re: [ECOLOG-L] Help: regressions involving aspect -- how to deal with circular x-axis?

2010-07-05 Thread Andy Rominger
Hi Madhu, Seems tricky! I think you might be best served by using explicitly circular methods for your circular data. I don't really know anything about such things (so why I'm responding to your post, I don't know!) but what little information I've gathered leads me to believe that you could