[Fink-devel] Can not install apbs through Fink

2015-07-02 Thread Xiaoguang Xue
. -- Xiaoguang Xue, PhD student Utrecht University Crystal Structural Chemistry Padualaan 8. Room N807 3584 CH Utrecht The Netherlands Tel. +31-30-253-2383 -- Don't Limit Your Business. Reach for the Cloud. GigeNET's Cloud

Re: [Fink-devel] Can not install apbs through Fink

2015-07-02 Thread Xiaoguang Xue
. Jack On Thu, Jul 2, 2015 at 10:36 AM, Xiaoguang Xue bio...@gmail.com wrote: Hi everyone! After I update my OS X tp 10.10.4, I can not install apbs through Fink. I got error related to CMake or fetk. Can anyone help me? Thanks! This is the detail CMake Error at CMakeLists.txt:217

[Fink-devel] Error from freeglut2

2015-02-01 Thread Xiaoguang Xue
! -- Xiaoguang Xue, PhD student Utrecht University Crystal Structural Chemistry Padualaan 8. Room N807 3584 CH Utrecht The Netherlands Tel. +31-30-253-2383 -- Dive into the World of Parallel Programming. The Go Parallel

[Fink-devel] libxml2.2.dylib is incompatible with pymol-py27

2014-12-17 Thread Xiaoguang Xue
12.0.0 or later, but libxml2.2.dylib provides version 10.0.0 Does anyone have idea about how to fix it? Thanks! -- Xiaoguang Xue, PhD student Utrecht University Crystal Structural Chemistry Padualaan 8. Room N807 3584 CH Utrecht The Netherlands Tel. +31-30-253-2383

Re: [Fink-devel] libxml2.2.dylib is incompatible with pymol-py27

2014-12-17 Thread Xiaoguang Xue
, 2014, at 1:46 PM, Xiaoguang Xue bio...@gmail.com wrote: Dear All I got an error after I install pymol-py27 through the latest fink. My system is OS X Yosemite 10.10.1 Traceback (most recent call last): File /sw/lib/python2.7/site-packages/pymol/__init__.py, line 71, in module

[Fink-devel] Can not open APBS plugin for PyMol in OSX 10.10

2014-10-22 Thread Xiaoguang Xue
:00:35 2014, 10.10, x86_64 Trees: local/main stable/main stable/crypto Xcode.app: 6.1.0 Xcode command-line tools: 6.1.0.0.1.1413057044 Max. Fink build jobs: 4 -- Xiaoguang Xue, PhD student Utrecht University Crystal Structural Chemistry Padualaan 8. Room N807 3584 CH Utrecht The Netherlands

Re: [Fink-devel] Can not open APBS plugin for PyMol in OSX 10.10

2014-10-22 Thread Xiaoguang Xue
After upgrade the pymol on my old laptop which is running OS X 10.9. APBS tools failed to open as well. On Wed, Oct 22, 2014 at 6:49 PM, Xiaoguang Xue bio...@gmail.com wrote: Hi, all the developers I installed pymol through fink in OS X 10.10, but I can't open APBS plugin. It seems the APBS

Re: [Fink-devel] Can not open APBS plugin for PyMol in OSX 10.10

2014-10-22 Thread Xiaoguang Xue
OK, It seems like this is a bug from apbs... And I found a patch from here. Now I can open the APBS plugin, but still need to test it to see if it's fully functional. http://sourceforge.net/p/pymolapbsplugin/bugs/1/ On Wed, Oct 22, 2014 at 6:51 PM, Xiaoguang Xue bio...@gmail.com wrote: After

[Fink-devel] Failed: phase compiling: gcc49-4.9.1-1000 failed on OS X 10.10

2014-10-19 Thread Xiaoguang Xue
: Package manager version: 0.38.0 Distribution version: selfupdate-rsync Sun Oct 19 13:00:35 2014, 10.10, x86_64 Trees: local/main stable/main stable/crypto Xcode.app: 6.0.1 Xcode command-line tools: 6.1.0.0.1.1413057044 Max. Fink build jobs: 4 -- Xiaoguang Xue, PhD student Utrecht University

[Fink-devel] Got an error when I tried to install pymol in OS X 10.10

2014-10-18 Thread Xiaoguang Xue
found) Exiting with failure. It seems like there's some problem of po4a package. Does anyone of you can help me? Thanks! -- Xiaoguang Xue, PhD student Utrecht University Crystal Structural Chemistry Padualaan 8. Room N807 3584 CH Utrecht The Netherlands Tel. +31-30-253-2383

Re: [Fink-devel] Got an error when I tried to install pymol in OS X 10.10

2014-10-18 Thread Xiaoguang Xue
It is OS X 10.10. Thx! On Sat, Oct 18, 2014 at 8:00 PM, Alexander Hansen alexanderk.han...@gmail.com wrote: On 10/18/14, 10:55 AM, Xiaoguang Xue wrote: Dear developers I got an error when I tried to install pymol through fink. fink install pymol-py27 apbs Scanning package description

Re: [Fink-devel] Got an error when I tried to install pymol in OS X 10.10

2014-10-18 Thread Xiaoguang Xue
It is OS X 10.10. Indeed, it seems like there is no po4a package in Fink. fink list po4a Information about 9738 packages read in 1 seconds. On Sat, Oct 18, 2014 at 8:28 PM, Xiaoguang Xue bio...@gmail.com wrote: It is OS X 10.10. Thx! On Sat, Oct 18, 2014 at 8:00 PM, Alexander Hansen

[Fink-devel] system-java-dev problem on Mountain Lion

2012-08-01 Thread Xiaoguang Xue
Xcode 4.4, command line tools and javadeveloper_for_os_x_2012004__11m3720.dmg Anyone have some suggestions? Thanks! -- Xiaoguang Xue, PhD student Utrecht University Crystal Structural Chemistry Padualaan 8. Room N807 3584 CH Utrecht The Netherlands Tel. +31-30-253-2383

Re: [Fink-devel] system-java-dev problem on Mountain Lion

2012-08-01 Thread Xiaoguang Xue
, Xiaoguang Xue bio...@gmail.com wrote: Hi, everyone I just upgrade my system to Mountain Lion (clean install from a DVD). But when I try to install a package named ppl9-0.11.2-3 from fink, I met an error. *Can't resolve dependency system-java-dev for package ppl9-0.11.2-3 (no* *matching

Re: [Fink-devel] system-java-dev problem on Mountain Lion

2012-08-01 Thread Xiaoguang Xue
think it might be a bug from apple's java pack. ( I'm not sure...) On Thu, Aug 2, 2012 at 2:24 AM, Alexander Hansen alexanderk.han...@gmail.com wrote: On 8/1/12 5:07 PM, Xiaoguang Xue wrote: I have no idea if this topic fit for this list. But I really want to follow the rules, don't want