Hello-
I have just installed freesurfer. Although tksurfer and tkregister2 seem
to work fine, I get the following error message when attempting tkmedit:
X Error of failed request: BadRequest (invalid request code or no such
operation)
Major opcode of failed request: 129 (Apple-DRI)
Hi Nick-
Yes, I am. If tksurfer would still work on an Intel, then this appears
to be the problem. Will wait for a new release. Thanks.
Anthony
Nick Schmansky wrote:
Anthony,
Are you using a new Intel-processor based Mac? If so, we don't
support that just yet. The 'X Error' message is
what volume are you selecting them on? Make sure that it has been
conformed - that is, that it's 256^3 and 1mm isotropic.
On Tue, 1 Aug
2006, Faden, Eric (NIH/NIMH) [F] wrote:
I am currently running 3.0.3 on RedHat EL v4. Whenever I load up a brain and
try to draw control points I can see a
can you give us details about how you did the conversion?
On Tue, 1 Aug
2006, Faden, Eric (NIH/NIMH) [F] wrote:
Upon further investigation it seems to be something wrong with my conversion
from MNC to MGZ. I have tried the exact same scan going through Analyze to MGZ
and the control points
mri_convert -c worked.
-Eric
-Original Message-
From: Bruce Fischl [mailto:[EMAIL PROTECTED]
Sent: Tue 8/1/2006 2:39 PM
To: Faden, Eric (NIH/NIMH) [F]
Cc: freesurfer@nmr.mgh.harvard.edu
Subject: RE: [Freesurfer] Vanishing Control Points
no, you should use mri_convert -c to conform
So my images come off the scanner as DICOM.
Steps For Both:
1) Convert DICOM to ANALYZE
2) Align and Average the scans
Steps For Broken:
3) Convert to minc to create a brain mask and do some normalization
4) Use mincedit to fake 1.0mm voxels (mine are actually 0.5 since I am doing
monkeys)
5)
no, you should use mri_convert -c to conform them. tkmedit is only
guaranteed to work with volumes that have been put through this process.
Bruce
On Tue, 1 Aug 2006, Faden, Eric (NIH/NIMH)
[F] wrote:
So my images are 256x256x192 x 1.0mm. One of them works and the other doesn't.
Should
I was wondering if setting the watershed parameters higher and
rerunning autorecon2 would expand the pial surface line if the outer
rim of the brain is being left out? Or would this not fix the problem?
Thanks
--
-Jake
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