Hi all.
Is there any fast method to get the total (R+L) white matter volumes of
different lobes?
I need the:
average ratio of temporal lobe wm to total white matter
average ratio of parietal lobe wm to total white matter
average ratio of frontal lobe wm to total white matter
average ratio of occip
I was unable to extract parts of the cortex with the commands you had told
me to try last time. I realised then that it was because recon hadn't
finished running and I was using partially processed data. So I tried
running it again. Here below is what I got. Since I'm using a partitioned
machine sp
Hi Roser,
it's hard to judge accuracy from a single slice. The cc segmentation
adjusts for the angle of the head, which can make any single sagittal slice
look wrong as the cc is cutting through it at an angle. Try looking at the
segmentation in other views. Horizontal can be particularly helfp
Hi Janani,
do you not have libtiff installed on your system? Maybe your
LD_LIBRARY_PATH is incorrect? You should talk to a local sysadmin about it.
cheers
Bruce
On Mon, 22 Mar
2010, Janani Dhinakaran wrote:
> I was unable to extract parts of the cortex with the commands you had told
> me t
Hi Janani,
I seem to recall that newer distributions (and judging from your kernel it is a
rather new distribution) come with libtiff.so.4 instead of libtiff.so.3. My
solution to this problem so far just was to symlink libtiff.so.4 to
libtiff.so.3. (Just go in the directory where the library li
I am trying to obtain mean intensities of Destrieux parcellations using the
following command.
asegstats2table --subjects --meas mean --statsfile
lh.aparc.a2009s.stats --tablefile somename.txt
But the output text files does not contain any label names.
instead it contains the following as o
Hello all,
In trying to perform a group analysis on volumetric and DTI data
(with test4d.nii.gz file created by fslmerge), I encounter an error.
Any help is greatly appreciated. Also, can anyone tell me what
programs they prefer to use for DTI group analysis? It seems QDEC
isn't helpful if you n
Hello all,
In trying to perform a group analysis on volumetric and DTI data
(with test4d.nii.gz file created by fslmerge), I encounter an error.
Any help is greatly appreciated. Also, can anyone tell me what
programs they prefer to use for DTI group analysis? It seems QDEC
isn't helpful if you ne