Re: [Freesurfer] Repost: Converting BV ROIs to FS

2012-09-04 Thread Bruce Fischl
Hi Katie I don't think anyone here knows how to do this as we don't use it. Perhaps the Brain Voyager people do? sorry, Bruce On Tue, 4 Sep 2012, Katie Bettencourt wrote: So our lab is running a couple analyses and we are getting different results based on whether we use Brain

Re: [Freesurfer] freesurfer tutorial data

2012-09-04 Thread Help Desk -- Paul Raines
2GB sounds like you reaching maybe a file size limit of your operating system if it is really old. Or if you have are trying to download to a FAT formated external USB drive or such. -- Paul Raines (http://help.nmr.mgh.harvard.edu) On Mon, 3 Sep 2012 11:32am, Bruce Fischl wrote: Hi Dix,

Re: [Freesurfer] creating a skull

2012-09-04 Thread Borzello, Mia
I'm using Unix. Should I try something else? Thanks, m From: Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: Monday, September 03, 2012 2:45 PM To: Borzello, Mia Cc: freesurfer Subject: Re: [Freesurfer] creating a skull Hi Mia what platform are you

Re: [Freesurfer] error in long_mris_slopes command

2012-09-04 Thread Martin Reuter
Hi Shannon, I have no idea why it would run and then when re-running it fails. Are you calling it exactly the same way? Do you have write permissions in those directories. If it prints the command (mris_label_calc) that it is trying to run, can you try to run only that command? Also you can try

[Freesurfer] mris_anatomical_stats on multiple subjects

2012-09-04 Thread Alexandra Tanner
Hi Doug and Freesurfers, I'm currently working on extracting thickness measurements from an ROI I manually created. I created my ROI label in tksurfer and applied the label to each subject I'd like to extract thickness data from using mri_label2label. I then used the following command to generate

Re: [Freesurfer] freesurfer tutorial data

2012-09-04 Thread Dix Meiberth
Thx for your responses. But no, I try to copy to my harddrive on my 1 year old Mac. I think for the fith time right now. There should be no limit but I will doublecheck. Best regards. Dix Von meinem iPhone gesendet Am 04.09.2012 um 20:56 schrieb Help Desk -- Paul Raines

Re: [Freesurfer] creating a skull

2012-09-04 Thread Bruce Fischl
no, that should be fine On Tue, 4 Sep 2012, Borzello, Mia wrote: I'm using Unix. Should I try something else? Thanks, m From: Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: Monday, September 03, 2012 2:45 PM To: Borzello, Mia Cc: freesurfer

[Freesurfer] Cortical parcellations and probtrackx2 in diffusion space

2012-09-04 Thread Alistair Perry
Hello freesurfer experts, I know this has been posted elsewhere with the original probtrackx. I am basically trying to create a surface file from the aseg+aparc.mgz cortical parcellation created when running recon-all. I wish to use this surface file as the seed reference file when performing

[Freesurfer] Covary for categorical variable in QDEC

2012-09-04 Thread Jeff Sadino
Hello, Is it possible to covary for a categorical variable in QDEC? I see other posters have said it is not possible, but I did not see any official documentation or response regarding the issue. Thank You, Jeff Sadino ___ Freesurfer mailing list