[Freesurfer] longitudinal hippocampal subfields analysis

Hi, I have been able to do the longitudinal processing steps for a number of subjects with 3 time points each, and then extract the generated statistics using aparcstats2table and asegstats2table. Is it possible to perform longitudinal analysis of the hippocampal subfields? If so, could someone po

Re: [Freesurfer] Fw: Re: Re: problems about freeview

Rujing, The freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0.tar.gz package should be valid for all CentOS6.x versions, desktop and server editions. I am not familiar with 'alternate' so I can not comment on that. -Zeke > > > > 发件人："charujing" > 发送时间：2014-01-05 09:55 > 主é¢

Re: [Freesurfer] problems about freeview

发件人："charujing" 发送时间：2014-01-05 10:26 主题：Fw: Re: Re: [Freesurfer] problems about freeview 收件人："charujing123" 抄送："freesurfer" 发件人："charujing" 发送时间：2014-01-05 09:55 主题：Re: Re: [Freesurfer] problems about freeview 收件人："zkaufman","Ruopeng Wang","charujing" 抄送："freesurfer" Hi Ruopeng and Zeke,

[Freesurfer] Fw: Re: Re: problems about freeview

发件人："charujing" 发送时间：2014-01-05 09:55 主题：Re: Re: [Freesurfer] problems about freeview 收件人："zkaufman","Ruopeng Wang","charujing" 抄送："freesurfer" Hi Ruopeng and Zeke, Thanks. I will try the latest version. CentOS has 6.0,6.1,6.2,6.3,6.4 and 6.5, also part of them have desktop, server and altern

Re: [Freesurfer] problems about freeview

2014/1/5, charujing : > Hi Ruopeng and Zeke, > Thanks. I will try the latest version. CentOS has 6.0,6.1,6.2,6.3,6.4 and > 6.5, also part of them have desktop, server and alternate version. And in > Freesurfer download page we can see: > OSPlatformVersionRelease DateDownloadSize > LinuxCentOS 6 x86

Re: [Freesurfer] problems about freeview

Hi Ruopeng and Zeke, Thanks. I will try the latest version. CentOS has 6.0,6.1,6.2,6.3,6.4 and 6.5, also part of them have desktop, server and alternate version. And in Freesurfer download page we can see: OSPlatformVersionRelease DateDownloadSize LinuxCentOS 6 x86_64 (64b)stable v5.3.015 May 20

Re: [Freesurfer] problems about freeview

Hello Rujing, You can download the most up to date version of freeview using the following link: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/fsdev/zkaufman/dev/ In order to use this version, you will need to replace the file $FREESURFER_HOME/bin/freeview.bin currently on your system, with

Re: [Freesurfer] problems about freeview

Hello Rujing, Can you please provide me with the contents of the build-stamp.txt file in your $FREESURFER_HOME directory so I can provide you with the correct most up to date version of freeview? Thx. -Zeke > On Jan 4, 2014, at 2:28 PM, Ruopeng Wang wrote: > > Hi Rujing, > > I am able to r

Re: [Freesurfer] problems about freeview

Hi Rujing, I am able to replicate the issue with 5.3.0 release. The good news is the issue does not appear in the current dev version (so I think it has been fixed). Zeke, would it be possible for Rujing to download a copy of the latest freeview build? Best, Ruopeng On Jan 4, 2014, at 10:40 A

Re: [Freesurfer] LGI computation problem

Hi Wee, We have an issue using lGI with matlab 2013 in the current version. It will be updated in the new version, but in the mean time if you want to use it, it's a very small change that you have to do. See the following post: http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg305

[Freesurfer] LGI computation problem

Hi all, I am trying to compute LGI index using freesurfer. However i got the following error message: *Improper assignment with rectangular empty matrix.Error in dsearchn (line 79)[d(i),t(i)] = min(sum((x-yi).^2,2));Error in mesh_vertex_nearest (line 29)nearestIndex = dsear

Re: [Freesurfer] freeview error {Disarmed}

Dear doug, bruce and others, Previously I could not view " freeview -f $SUBJECTS_DIR/fsaverage/surf/lh.inflated:overlay=lh.gender_age.glmdir/lh-Avg-thickness-age-Cor/mc-z.negative.sig.cluster.mgh:overlay_threshold=2,5:annot=lh.gender_age.glmdir/lh-Avg-thickness-age-Cor/mc-z.negative.sig.ocn.annot

[Freesurfer] problems about freeview

Dear doug, bruce and others, Previously I could not view " freeview -f $SUBJECTS_DIR/fsaverage/surf/lh.inflated:overlay=lh.gender_age.glmdir/lh-Avg-thickness-age-Cor/mc-z.negative.sig.cluster.mgh:overlay_threshold=2,5:annot=lh.gender_age.glmdir/lh-Avg-thickness-age-Cor/mc-z.negative.sig.ocn.annot