[Freesurfer] STRING type

I'm trying to build Freesurfer from developer sources and am running into this error: mriio.c:3692:27: error: 'STRING' undeclared (first use in this function) status = output_volume((STRING)fname, nc_data_type, signed_flag, min, max, Can you tell me where STRING comes from? I could not

Re: [Freesurfer] mri_nu_correct error: Ubuntu 16.04

The deal with using freesurfer 5.3 and older versions of perl is a little complicated because perlbrew installs older versions of perl under the users home directory, but the mni scripts point to /usr/bin/perl. I will point you to this thread where I explain the additional steps you need to do

[Freesurfer] Brighter image at baseline vs. follow up using longitudinal processing stream

Hello, I am in the process of checking the alignment of my participant's baseline and followup scans to the template scan using the norm.mgz files. I notice that sometimes the image appears brighter in the first scan vs. the second follow up scan. Is this problematic? I don't see any clear

Re: [Freesurfer] mri_nu_correct error: Ubuntu 16.04

Apologies, i had the incorrect freesurfer firing later in the script. It is now working with the dev version But it still stands that downgrading to perl 5.18 did not help when using 5.3 From: freesurfer-boun...@nmr.mgh.harvard.edu

Re: [Freesurfer] mri_nu_correct error: Ubuntu 16.04

Can you provide the log file when running with the dev version? It really should work when using the dev version. On 12/08/2016 04:20 PM, William George Henry Collishaw wrote: > Hello Freesurfer Developers, > > I'm attempting to run recon-all on Ubuntu 16.04, on failure I am getting > the

[Freesurfer] mri_nu_correct error: Ubuntu 16.04

Hello Freesurfer Developers, I'm attempting to run recon-all on Ubuntu 16.04, on failure I am getting the following log: mri_nu_correct.mni --n 1 --proto-iters 1000 --distance 50 --no-rescale --i orig .mgz --o orig_nu.mgz Linux jupiter 4.4.0-43-generic #63-Ubuntu SMP Wed Oct 12 13:48:03 UTC

[Freesurfer] FreeSurfer v6.0 release

Hello, We are currently setting up our study's structural analyses using FreeSurfer. When will the next version of FreeSurfer (6.0) be released? Thank you! Kaley Associate Research Specialist Center for Healthy Minds Waisman Center for Brain Imaging and Behavior University of

[Freesurfer] FreeSurfer v6.0 release date

Hi FreeSurfer, We are currently setting up our study's structural analyses using FreeSurfer. When will the next version of FreeSurfer (6.0) be released? Thank you! Kaley Associate Research Specialist Center for Healthy Minds Waisman Center for Brain Imaging and Behavior University of

Re: [Freesurfer] TRACULA - RH ILF Issue

Hey A.Y, Thanks for the explanation. I followed your instructions and now all looks normal! Thanks again! Doug On Dec 8, 2016, at 11:57 AM, "Yendiki, Anastasia" > wrote: Hi Doug - Look for the explanation of the reinit variable

Re: [Freesurfer] HC Subfields LongHippo

Dear Eugenio, you're absolutely right. Since I'm using the most recent version everything works well. Thanks a lot! Best, Sebastian - Original Message - From: "Iglesias Gonzalez" To: "Freesurfer support list" Sent: Friday,

[Freesurfer] Longitudinal base creating in version 5.1 vs 5.3

Hi FreeSurfer team, My lab is looking at longitudinal data across 5 time points for each subject. All of our time points have been edited in version 5.1 for consistency. However, I have run into an issue when trying to create the bases for these subjects in this version due to a memory