Hey A.Y, Thanks for the explanation. I followed your instructions and now all looks normal!
Thanks again! Doug On Dec 8, 2016, at 11:57 AM, "Yendiki, Anastasia" <ayend...@mgh.harvard.edu<mailto:ayend...@mgh.harvard.edu>> wrote: Hi Doug - Look for the explanation of the reinit variable all the way at the end of the sample config file. You add "set reinit =1" to the config file, set the pathlist and subjlist to only the specific tract and subject that you want to rerun, and then rerun the -prior and -path steps. Hope this helps, a.y ________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu> [freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>] on behalf of Douglas Merkitch [douglas_merki...@rush.edu<mailto:douglas_merki...@rush.edu>] Sent: Thursday, December 08, 2016 11:27 AM To: Freesurfer support list Subject: [Freesurfer] TRACULA - RH ILF Issue Hello Freesurfer experts, I've finished processing a subject through the TRACULA pipeline (freesurfer-Darwin-OSX-stable-v6-beta-20161116-5037eae), and I'm getting a weird result for the right inferior longitudinal fasciculus (see screenshots). I don't think this is just a display issue? I do know that you would most likely need more information from me, but I'm not sure what you will need. Any help would be appreciated! Thanks, Doug Douglas Merkitch Neurological Sciences Rush University Medical Center Phone: (312) 563-3853<tel:%28312%29%20563-3853> Fax: (312) 563-4660<tel:%28312%29%20563-4660> Email: douglas_merki...@rush.edu<mailto:douglas_merki...@rush.edu> <rh_ilf_issue.png><merged_avg_33_mni_bbr.png> _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://urldefense.proofpoint.com/v2/url?u=https-3A__mail.nmr.mgh.harvard.edu_mailman_listinfo_freesurfer&d=DgIBAg&c=XxU8ngzB_WPJXKyiin_6iQ&r=GRn28rC6ssBi3WYtpTHXUZZiKgdhzFrFkzz7_Ref9iw&m=vv9w0vZGSLoJWaRlQBz7OHm3QkrwxxTFamY-6LJMPfM&s=gnhnpfX6bGkrfhsn0VA2spCTkJN8aH2vJABCd8bGA68&e= The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at https://urldefense.proofpoint.com/v2/url?u=http-3A__www.partners.org_complianceline&d=DgIBAg&c=XxU8ngzB_WPJXKyiin_6iQ&r=GRn28rC6ssBi3WYtpTHXUZZiKgdhzFrFkzz7_Ref9iw&m=vv9w0vZGSLoJWaRlQBz7OHm3QkrwxxTFamY-6LJMPfM&s=IMgG1U0Rllid6FHjAwBMsvSbCTzFAxs0Vz09VrAzzTU&e= . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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