Re: [Freesurfer] New to freesurfer Needhelp to install in Ubuntu 16 lts

2017-04-14 Thread Ramesh Babu
Dear Bruce, I am using bash shell. Please see the further details below. pc@RB:~$ echo $0 bash pc@RB:~$ echo $SHELL /bin/bash pc@RB:~$ ps -p "$$" PID TTY TIME CMD 3706 pts/100:00:00 bash List of fails in the freesurfer folder; /usr/local/freesurfer/average /usr/local/freesurfer/f

[Freesurfer] Ascii file of thickness overlay with vertex index and coordinates

2017-04-14 Thread Michael Kranz
Hi, I was wondering how I would go about getting the vertex index and coordinates in one ascii file for a thickness overlay file. With mri_convert using the --asci+crsf option it outputs the vertex index only. Now I want to get the coordinates of each index...Is this possible? I may be misunderst

Re: [Freesurfer] New to freesurfer Needhelp to install in Ubuntu 16 lts

2017-04-14 Thread Bruce Fischl
Hi Ramesh you need to tell us what shell you are running. cheers Bruce On Fri, 14 Apr 2017, Ramesh Babu wrote: > Dear Expert, > > I am new member of this freesurfer mailing list. I just downloaded > freesurfer package and installed in /usr/local/freesurfer. > > I am trying to follow the comma

[Freesurfer] New to freesurfer Needhelp to install in Ubuntu 16 lts

2017-04-14 Thread Ramesh Babu
Dear Expert, I am new member of this freesurfer mailing list. I just downloaded freesurfer package and installed in /usr/local/freesurfer. I am trying to follow the command given in the freesurfer web page. $> export FREESURFER_HOME=/usr/local/freesurfer $> source $FREESURFER_HOME/SetUpFreeSurfe

[Freesurfer] Problem with TR and FS-FAST (fcMRI)

2017-04-14 Thread stdp82
Hi list,for some subjects fcMRI with FS-FAST produce the error reported below.I'm sure that the TR is 3.0 s, as well as for the subjects that are running correctly . Which is the cause of this inconsistency?ThanksStefano ERROR: TR mismatch between analysis and data analysis TR = 3, data TR = 43.0