[Freesurfer] mri_glmfi-sim multi-thread

Dear Freesurfer Experts, My apologies for what might be a very simple question, but I have been unable to locate an answer in the archives/wiki. Our group is trying to cut down on our mri_glmfit-sim time (as we are hoping to run mri_glmfit-sim -sim mc-full, rather than -sim mc-z). I know that

Re: [Freesurfer] [Talairach failed when striping skull]

Dear Douglas, This fails just on this one. Image seems good. I attached it in the previous mail but being held. Thanks! Best Regards, Yi -Original Message- From: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve Sent:

Re: [Freesurfer] make_average_subject error

Please see the attached log file. Thanks, Tugce On 11/16/17, 11:35 AM, "freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Douglas N Greve" wrote: can you send the entire log file? On

Re: [Freesurfer] [Talairach failed when striping skull]

does this fail on all your subjects or just this one? Have you looked at the input image to make sure that there is nothing wrong with it? On 11/16/2017 11:32 AM, Yi Li wrote: > Hi FS expert, > > When I run recon-all -autorecon1 -subjid , the Talaitach transform > failed. Please see the

Re: [Freesurfer] make_average_subject error

can you send the entire log file? On 11/16/2017 11:32 AM, Duran, Tugce wrote: > > Dear FreeSurfer Experts, > > I’m recently getting an error in make_average_subject and can’t find > the reason. > > Please see the following for the error log from recon-all.log: > > *Loading aseg from >

[Freesurfer] [Talairach failed when striping skull]

Hi FS expert, When I run recon-all -autorecon1 -subjid , the Talaitach transform failed. Please see the attached log file. Is there a way to correct the error? Thanks! Best Regards, Yi -Original Message- From: freesurfer-boun...@nmr.mgh.harvard.edu

[Freesurfer] make_average_subject error

Dear FreeSurfer Experts, I’m recently getting an error in make_average_subject and can’t find the reason. Please see the following for the error log from recon-all.log: Loading aseg from

Re: [Freesurfer] Optseq and de convolution for rapid designs

I don't know about SPM, I would imagine you could do it somehow. FSL has an implementation. The deconvolution method is usually called "FIR" (finite impulse response) On 11/16/2017 10:36 AM, fmri2013 wrote: > Dear Douglas > > I will apprecite it if you can please clarify this simple question.

Re: [Freesurfer] Optseq and de convolution for rapid designs

Dear Douglas I will apprecite it if you can please clarify this simple question. If I optimise my design using Optseq, do you know if this de convolution process is implemented in SPM or any other software? and it is part of the processing behind the scenes?  Or do I have to account for this

Re: [Freesurfer] optseq with dependent stim types in a single trial

Sorry, those kinds of constraints, ie, requiring some events to be in a certain order, are not possible in optseq. On 11/15/2017 08:44 PM, Michelle VanTieghem wrote: > Hello, > > I am using optseq to optimize a new task. I have been playing around > with the examples they have on the

Re: [Freesurfer] feeding data not processed with longitudinal pipeline into Linear Mixed Effects (LME) model

Hi Lara, yes that is possible (and it also makes sense in early childhood as the longitudinal stream assumes no (or only minimal) head growing). Best, Martin Am 14.11.2017 um 19:03 schrieb Lara Foland-Ross: > Hello Freesurfer experts, > > I have two longitudinal datasets. In each dataset,