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Unless I'm mistaken, the runtime on the FTP should be identical to the one
distributed by Mathworks? Maybe someone who knows can comment on this, but you
could try this link:
https://www.mathworks.com/products/compiler/matlab-runtime.html
Just m
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Dear experts,
I'm running a sensory mapping experiment, which I would like to analyse in
single subject space. Everything seems to be working fine (see code excerpt
below). Now I'd like to do two additional things:
1) show the surface results
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Hi Douglas,
Could you help me on this point ?
Best,
Matthieu
Le mer. 12 déc. 2018 à 10:50, Matthieu Vanhoutte <
matthieuvanhou...@gmail.com> a écrit :
> Dear Douglas,
>
> Is it possible to use mri_gtmpvc command in order to intensity normalize
> PE
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Dear experts,
Is there any advice on this point ?
Best,
Matthieu
Le mer. 12 déc. 2018 à 10:47, Matthieu Vanhoutte <
matthieuvanhou...@gmail.com> a écrit :
> Dear Freesurfer's experts,
>
> In order to have a robust PET signal projection, is it possi
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>
> Hi Douglas,
>
> Could you help me about my previous mail with questions ?
>
> Thanks,
> Matthieu
>
>
> Le ven. 7 déc. 2018 à 14:31, Matthieu Vanhoutte <
> matthieuvanhou...@gmail.com> a écrit :
>
>> Hi Douglas,
>>
>> Thanks for these clarifications.
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Hi Freesurfer experts,
I'm writing to ask if you have any suggestions on generating cortical
layers for hippocampus subfield cortical regions with the help of
freesurfer. When generating cortical layers for other neocortex brain
region, the surface fil
You will need to set --psf 0 and --no-tfe to fully turn off PVC.
On 12/18/18 4:50 AM, Matthieu Vanhoutte wrote:
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Hi Douglas,
Could you help me on this point ?
Best,
Matthieu
Le mer. 12 déc. 2018 à 10:50, Matthieu Vanhoutte
mailto:matthieuvanhou...@gmail.c
you can use mri_vol2surf to sample at different depths. If you want a simple
average across cortex, then you can use --projfrac-avg .35 .65 .05
If you want to do more sophisticated weighting, then you will have to sample at
each layer and then combine the files (eg, fscalc). Unless you have very
On 12/7/18 9:29 AM, Matthieu Vanhoutte wrote:
> External Email - Use Caution
>
> Hi Douglas,
>
> Thanks for these clarifications. I added some others questions inline below.
>
> Best,
> Matthieu
>
>> Le 6 déc. 2018 à 17:25, Greve, Douglas N.,Ph.D. a
>> écrit :
>>
>>
>>
>> On 11/30/2018
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Hello,
I am trying to run a VBM analysis by using the white matter and the grey
matter masks from Freesurfer, because, often, other tools are not able to
calculate a correct white matter and grey matter masks.
When I have these masks, I have to apply th
Hi Maurizio
the orig.mgz has been converted to 1 byte/pixel and 256^3 1mm isotropic.
You can use mri_convert to go back to your original data space via:
mri_convert -rl orig/001.mgz
cheers
Bruce
On Tue,
18 Dec 2018, Maurizio Bergamino wrote:
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Thank you!
Il giorno mar 18 dic 2018 alle ore 11:43 Bruce Fischl <
fis...@nmr.mgh.harvard.edu> ha scritto:
> Hi Maurizio
>
> the orig.mgz has been converted to 1 byte/pixel and 256^3 1mm isotropic.
> You can use mri_convert to go back to your original
sorry, I don't think we have anything that will do what you want
cheers
Bruce
On Tue, 18
Dec 2018, Yixin Ma wrote:
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Hi Freesurfer experts,
I'm writing to ask if you have any suggestions on generating cortical layers
for hippocampus
subfield cort
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Dear Prof. Fischl,
I hope to use Freesurfer to get some surface measures of brain structures.
The 'recon-all' command will give the output of the surface measures when
input the T1w MRI images. If my input files are the segmented binary masks
(such as
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Hey Doug,
We want to find the functional areas where each electrode is located in
patients. At present, we are finding the electrode RAS coordinates manually
using CT-MRI co-registration. We are then manually searching for these
locations in Freeview u
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Dear all
I want to use T2 or FLAIR data to improve pial surfaces. I wonder, which
one is better? using T2pial or FLAIRpial?
Is there any difference in output?
Thank you so much in advance for your time and help!
Hengameh
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