[Freesurfer] pial.lgi

2019-07-09 Thread vittal korann
External Email - Use Caution Hi FS experts, I wanted to run the gyrification index for all patients with Schizophrenia and volunteers. When I entered the command: "recon-all -s SATM124 -qcache -measure pial_lgi" and the terminal output " Subject Stamp: freesurfer-Linux-centos6_

Re: [Freesurfer] pial.lgi

2019-07-09 Thread Greve, Douglas N.,Ph.D.
did you run the lgi analysis? On 7/9/19 4:15 PM, vittal korann wrote: > > External Email - Use Caution > > Hi FS experts, > > I wanted to run the gyrification index for all patients with Schizophrenia > and volunteers. When I entered the command: > "recon-all -s SATM124  -qcache -measure p

Re: [Freesurfer] Desikan atlas

2019-07-09 Thread Greve, Douglas N.,Ph.D.
No. But you can just recon-all the mni152 and it will generate an aparc+aseg with the DK atlas On 7/9/19 1:59 AM, Pinar Pnr wrote: > > External Email - Use Caution > > Hi dear Freesurfer users, > > Is there a version of Desikan atlas in MNI space? > > Bset Regards, > Pinar > > > _

Re: [Freesurfer] Error in analyze (Qdec)

2019-07-09 Thread Greve, Douglas N.,Ph.D.
Can you tar or compress /home/abby/Desktop/qdecyoung/qdec/Untitled/ and upload it here ftp://surfer.nmr.mgh.harvard.edu/transfer/incoming Let me know when it is there and what the file name is On 7/9/19 6:35 AM, Abby tang wrote: > > External Email - Use Caution > > Hello FreeSurfer Develo

[Freesurfer] mris_make_surfaces -aseg filled vs -noaseg (difference v5.3 and v6)

2019-07-09 Thread Scott Love
External Email - Use Caution Hello all, To create surfaces for a sheep brain using Freesurfer version 5.3 I previously used, mris_make_surfaces -mgz -noaparc -aseg filled -T1 brain.finalsurfs $subj rh, and it worked great. Running the same command using version 6 (freesurfer-D

Re: [Freesurfer] Error in analyze (Qdec)

2019-07-09 Thread Abby tang
External Email - Use Caution Hi I have uploaded it in ftp, the file name is /home/abby/QDEC.tar.gz or QDEC.tar.gz. Thank you. Greve, Douglas N.,Ph.D. 于2019年7月9日周二 下午10:42写道: > Can you tar or compress /home/abby/Desktop/qdecyoung/qdec/Untitled/ and > upload it here > ftp://surfer