External Email - Use Caution
Dear Freesurfer Team,
This is a follow on to the question regarding manual validation results for the
FS 6.0 hippocampal subfield total mask. Could you please also comment on the
similarities and differences between the hippocampal subfield
You can try updating your version of freeview following the instructions at
https://surfer.nmr.mgh.harvard.edu/fswiki/UpdateFreeview. The freeview version
shipped with FS 6.0 uses some pretty old Qt libraries, so upgrading might fix
this… hopefully
Andrew
From: on behalf of "Tarui, Tomo"
External Email - Use Caution
Dear Freesurfer Team,
Thank you for your work on the segmentation and analysis tools that have been
provided through Freesurfer and that have been used so widely. We are wondering
if there is a T1 image data set available for which manual
External Email - Use Caution
Hello!
I would like to register my dwidata to the anatomical image (rawavg.mgz). I
have run bbregister, but how can I specify a different target image?
bbregister uses the orig.mgz right?
These are the commands I used:
bbregister --s sub001 --mov
External Email - Use Caution
Hello FreeSurfer Developers,
I'm attempting to run the longitudinal pipeline for recon-all outside of
fmriprep. The first step, cross, ran fine and I received the expected outputs.
I started the base step and for most of my subjects it appears to
External Email - Use Caution
Thank you very much for your prompt advice. I have granted freeview the
permission to access all files through System Preferences —> Security & Privacy
—> Privacy (then restarted computer).
Unfortunately, the freeview still freezes when attempting to
-- Forwarded message --
Date: Thu, 23 Jan 2020 03:37:12 +
From: "Pizzagalli, Diego A.,Ph.D."
To: 'Help Desk -- Sam Mehl'
Subject: RE: FW: Post-doctoral Positions in Affective Neuroscience at McLean
Hospital/Harvard Medical School
I'd be very grateful if you could forward
You probably need to grant freeview permission to access your files and
folders if you have not. You can check in System Preferences.
Ruopeng
On 1/23/20 2:16 PM, Tarui, Tomo wrote:
External Email - Use Caution
Dear Freesurfer community,
I have been also experiencing problem that
External Email - Use Caution
Dear Freesurfer community,
I have been also experiencing problem that freeview froze when I tried to
select and open a new volume file.
This started after I upgraded mac OS X to Catalina. Until that I have been
using freeview fine for five years.
Hi Rene,
The atlases are slightly different so the outputs will be a bit different. But
the segmentations will indeed be comparable.
Cheers,
/Eugenio
Juan Eugenio Iglesias
Senior research fellow
CMIC (UCL), MGH (HMS) and CSAIL (MIT)
http://www.jeiglesias.com
From: on behalf of Rene Seiger
Dear Freesurfer experts
Hi
I have a follow up question on this topic.
I am getting this error "Error using /Matrix dimensions must agree. Error in
fast_selxavg3b (line 566) RescaleFactor = flac0.inorm/gmean;", when I run
selxavg for one of my subjects. I attached the log file and copied the
External Email - Use Caution
The Whole Brain Modelling Group (PI Dr. John Griffiths; www.grifflab.com)
at the CAMH Krembil Centre for Neuroinformatics (
www.krembilneuroinformatics.ca) and University of Toronto is looking for
PhD and MSc students with a strong background in
External Email - Use Caution
Dear all,
I recently saw that the page of the hippocampal module for FS6
(https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfields) seems
to be obsolete and it looks as if this module will be replaced by a
newer version in the near future
13 matches
Mail list logo
