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I ran gtmseg for my partial volume correction
1. but I have a question. What regions are for the detail??
in this option.
mri_gtmpvc --default-seg-merge.
I searched mri_gtmpvc --help
but it is default schema for merging ROIs.
So I wanna know what reg
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Hello,
I am new to freesurfer and currently analysing and working on fMRI Data for my
master thesis. I’ve come to an issue, that I can’t seem to solve.
The following error occurs and I cannot find a threat or forum entry that
solves it.
/Applicatio
Hi Philipp
does this happen for all the FS executables? What kind of machine are you
trying it from and who installed it? Sounds like you are on a mac and
maybe trying to use a version installed for a different kind of computer
cheers
Bruce
On Thu, 30 Jan 2020, Philipp Barzyk
wrote:
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Tanks for the quick reply.
what exactly do you mean by all FS executables? It happens for various commands
I am using but they all work on my Imac.
I am working from a 2019 macbook air using catalina, and installed it myself.
The imac where it works
Hi Renew - I think it's just because of using "/" instead of "\" at the end of
lines for bveclist and bvallist. If the problem persists after you change that,
let us know.
a.y
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Renew Andrade
Sent: Wedne
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Hello Phillip,
If you run the following command on that file - which is from the 6.0.0
freesurfer release,
$ file /Applications/freesurfer/tktools/tkregister2.bin
I think you will see that it reports it is a i386 binary - which is 32 bit -
and cannot
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Hello Phillip,
If you run the following command on that file - which is from the 6.0.0
freesurfer release,
$ file /Applications/freesurfer/tktools/tkregister2.bin
I think you will see that it reports it is a i386 binary - which is 32 bit -
and cannot
Just to add on to this: you should use freeview, which runs smoothly on
Catalina, for visualizing registration quality
Andrew
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of fsbuild
Sent: Thursday, January 30, 2020 12:32 PM
To: freesurfer@nmr
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Having difficulty with how to use label2label for this purpose. Just need a
binary mask of medial wall (vertex number and 0 or 1s) on native surface.
What's would this command be?
On Jan 28, 2020 5:42 PM, "Greve, Douglas N.,Ph.D."
wrote:
Attention
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Hi,
I am running recon-all on Freesurfer version 6. Few of my subject's
have XL defect error as shown below.
CORRECTING DEFECT 0 (vertices=18408, convex hull=3300, v0=0)
XL defect detected...
This has been running for more than a day.
How can I fix
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