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Thanks all; I've added --trilinear --smoothing and --contrast so the images run
with them natively. I agree with some calibration they actually do look
similar. A question: is there some basis for which level/window values are
loaded? The initial
I could not tell a difference either.
On 4/14/2020 4:59 PM, Ruopeng Wang wrote:
Hi Brian,
I honestly can’t tell the difference, even when the high dpi rendering
is turned on. The volume is low res to begin with. There is a smooth
display check box you can try in freeview. It will remove the
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I will send it directly to your email in a minute.
R.
On Apr 14, 2020, at 16:53, sapere-a...@tuta.io
wrote:External Email - Use
CautionHi,the FreeSurfer Ubuntu
VirtualBox Virtual Machine asks for a password to log in (see the attached
image).I
Hi Brian,
I honestly can’t tell the difference, even when the high dpi rendering is
turned on. The volume is low res to begin with. There is a smooth display check
box you can try in freeview. It will remove the pixelation of the rendering.
Best
Ruopeng
> On Apr 14, 2020, at 4:28 PM, Renner,
Hi Jorge,
Some v6.0 binary data must have been pruned from the public server. I just
synced it all back, so now you should be able to download the extra files with:
git fetch datasrc
git annex get .
Sorry about that. Glad to see you got everything else working – compiling 6.0
externally is
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Attached are bvecs and bvals.
---
Jessica Hua, M.A.
Cognitive and Emotional Control Lab
Doctoral Candidate Clinical Psychology
University of Missouri
0,0,0
0,0,0
0,0,0
0,0,0
0,0,0
1,
If you want to map the aparc+aseg into the T2 space, then use
mri_label2vol (run with --help) or at least use --interp nearest in the
vol2vol command
On 4/14/2020 2:35 PM, Agnieszka Sabisz wrote:
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Dear All,
I would like to ask you a question.
I'm trying
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Dear All,
I would like to ask you a question.
I'm trying to extract values from T2 maps from few brain areas. In my
pipeline I miss something and I have a problem to figure out what I'm doing
wrong.
In the first step, I register my T2w image to T1
Hi Brian,
Can you load a single volume in freeview to compare? Maybe also use similar
window/level? The one in the picture appears smoothed to me (may due to
trilinear sampling if it is not the first loaded volume).
Best,
Ruopeng
> On Apr 14, 2020, at 1:14 PM, Renner, Brian wrote:
>
>
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Hi Douglas
Just checking in to see if you had any insight into my issue?
Thanks!
Tiffany
On Apr 2, 2020, at 5:57 PM, Tiffany Bell
mailto:tiffany.b...@ucalgary.ca>> wrote:
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When I try with fsl 6.0 I get:
Hi Alex,
Unfortunately, I can’t think of any other way to resolve or troubleshoot this.
It might be helpful to post this issue to a java forum or matlab central.
Andrew
From: on behalf of "Lab of Autism and
Developmental Neuroscience, Lab of Autism and Developmental Neuroscience"
Reply-To:
Hi Brian,
A couple questions - are you visualizing on a mac retina screen? If so, there
will be a slight decrease from the standard resolution because the underlying
rendering library that we use unfortunately does not support retina
capabilities at this time. Also, are you loading single or
I don't think we have anything dedicated to this purpose. You could do
it in matlab easily enough with something like
a = MRIread('glm1/contrast/sig-from-palm.mgz');
b = MRIread('glm2/contrast/sig-from-palm.mgz');
na = length(find(abs(a.vol>thresh)))
nb = length(find(abs(b.vol>thresh)))
nab =
Hi Xiaojing,
You should be able to rename them! It’s important to note that all of you log
text files saved in your subjects’ script directory will reflect the original
directory names – but if your output looks good and recon-all completed without
errors, you can go right ahead. If you
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Dear FS developers,
I have done some recon-all computing for a group of subjects, subject1,
subject2, . , subjectn, and the results are in the $SUBJECTS_DIR directory:
$SUBJECTS_DIR
|_ subject1
On 4/14/2020 5:40 AM, Ferraro, Pilar wrote:
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Dear Freesurfer experts,
We are conducting a PETSurfer analysis, and have some questions on the
best way to proceed. Briefly, this is what we have done:
After running the standard Freesurfer analysis an all
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Dear Freesurfer experts,
We are conducting a PETSurfer analysis, and have some questions on the best way
to proceed. Briefly, this is what we have done:
After running the standard Freesurfer analysis an all the T1 images, we have
generated the
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Hi Douglas, I was wondering if I could explain our problem clearly.
thanks again,
Ersin
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