Re: [Freesurfer] segmentHA on Human Connectome Project

External Email - Use Caution I applied the change you suggested. It took me a while to run both segmentHA_T1 and segmentHA_T2 on all my subjects (n = 145), to see whether I'll encounter any kind of errors, which I didn't. Thanks a lot! Bests, Amir On Tue, Oct 20, 2020 at 5:35 PM

[Freesurfer] Convert FSL .nii ROI into FreeSurfer Label

External Email - Use Caution Hi FreeSurfer Experts, How can I convert a .nii ROI into a FreeSurfer label? I was able to convert the .nii into a .mgh file but could not figure out how to convert to a label file. Thank you, Jessica ___

Re: [Freesurfer] Exited with errors, segmentation fault

External Email - Use Caution Hi Andrew, Thank you for your reply. Updating freesurfer solved the problem. However, when I ran step 2 in the longitudinal processing three subjects exited with errors. I’ve attached the recon-all.log and recon-all.error. What can I do to solve this

[Freesurfer] Fwd: Freesurfer edits

External Email - Use Caution Any comments from FS users to best best tackle these manual edits? Jim Get Outlook for Android From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Alexopoulos, Dimitrios Sent: Tuesday,